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MCL coexpression mm9:3475

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Phase1 CAGE Peaks

 Short description
Mm9::chr4:41702405..41702438,+p1@Galt
Mm9::chr4:41702440..41702456,+p6@Galt
Mm9::chr4:41702462..41702481,+p7@Galt


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data


no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>


Uber Anatomy
Ontology termp-valuen
intestine1.59e-1331
digestive tract diverticulum1.93e-1123
sac1.93e-1123
liver6.28e-1122
epithelial sac6.28e-1122
digestive gland6.28e-1122
epithelium of foregut-midgut junction6.28e-1122
anatomical boundary6.28e-1122
hepatobiliary system6.28e-1122
foregut-midgut junction6.28e-1122
hepatic diverticulum6.28e-1122
liver primordium6.28e-1122
septum transversum6.28e-1122
liver bud6.28e-1122
gastrointestinal system6.68e-1047
endoderm-derived structure9.64e-10118
endoderm9.64e-10118
presumptive endoderm9.64e-10118
digestive system1.25e-09116
digestive tract1.25e-09116
primitive gut1.25e-09116
subdivision of digestive tract3.93e-09114
exocrine gland9.38e-0925
exocrine system9.38e-0925


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)

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