FFCP PHASE1:Hg19::chr9:126774018..126774055,+
From FANTOM5_SSTAR
Short description: | p1@LHX2 |
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Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_LHX2_5end |
Coexpression cluster: | C1198_Neural_parietal_occipital_Astrocyte_brain_duodenum_temporal |
Association with transcript: | 129bp_to_ENST00000373615, NM_004789, uc004boe.1, uc010mwi.1_5end |
EntrezGene: | LHX2 |
HGNC: | 6594 |
UniProt: | P50458B3KNJ5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p1@LHX2 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
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neural cell | 1.36e-10 | 25 |
neuron associated cell | 2.43e-07 | 17 |
neuron associated cell (sensu Vertebrata) | 2.43e-07 | 17 |
neurectodermal cell | 5.50e-07 | 59 |
Ontology term | p-value | n |
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pre-chordal neural plate | 1.99e-42 | 61 |
cerebral hemisphere | 1.63e-38 | 32 |
telencephalon | 5.36e-38 | 34 |
regional part of telencephalon | 6.88e-36 | 32 |
regional part of forebrain | 1.35e-35 | 41 |
forebrain | 1.35e-35 | 41 |
anterior neural tube | 1.35e-35 | 41 |
future forebrain | 1.35e-35 | 41 |
brain grey matter | 3.96e-33 | 34 |
gray matter | 3.96e-33 | 34 |
Ontology term | p-value | n |
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cell type cancer | 2.80e-07 | 143 |
disease of cellular proliferation | 8.72e-07 | 239 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.