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MCL coexpression mm9:120

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Phase1 CAGE Peaks

 Short description
Mm9::chr10:24636490..24636494,-p@chr10:24636490..24636494
-
Mm9::chr10:61533762..61533768,+p1@Gm5424
Mm9::chr10:61534567..61534573,-p@chr10:61534567..61534573
-
Mm9::chr10:86981676..86981681,+p@chr10:86981676..86981681
+
Mm9::chr10:87044592..87044623,+p@chr10:87044592..87044623
+
Mm9::chr10:92951511..92951519,+p2@Hal
Mm9::chr11:110112946..110112955,-p4@Abca6
Mm9::chr11:110113007..110113018,-p3@Abca6
Mm9::chr11:11797704..11797711,-p@chr11:11797704..11797711
-
Mm9::chr11:86652224..86652228,-p@chr11:86652224..86652228
-
Mm9::chr11:98912753..98912767,+p@chr11:98912753..98912767
+
Mm9::chr13:52275630..52275635,+p@chr13:52275630..52275635
+
Mm9::chr13:94407519..94407531,-p1@Bhmt
Mm9::chr14:41918648..41918667,+p1@Mat1a
Mm9::chr14:41918833..41918858,+p3@Mat1a
Mm9::chr15:96859705..96859708,-p@chr15:96859705..96859708
-
Mm9::chr16:4790187..4790203,-p5@5730403B10Rik
Mm9::chr16:4790205..4790216,-p6@5730403B10Rik
Mm9::chr17:31772973..31772975,+p@chr17:31772973..31772975
+
Mm9::chr17:43804462..43804486,+p1@Cyp39a1
Mm9::chr17:85076302..85076305,-p@chr17:85076302..85076305
-
Mm9::chr18:21119777..21119791,+p7@Rnf125
Mm9::chr18:21119803..21119851,+p4@Rnf125
Mm9::chr18:21119857..21119882,+p3@Rnf125
Mm9::chr19:46747553..46747562,-p2@Cyp17a1
Mm9::chr19:58529905..58529948,-p10@Gfra1
Mm9::chr19:58529971..58529985,-p9@Gfra1
Mm9::chr1:164913185..164913187,+p@chr1:164913185..164913187
+
Mm9::chr1:177555683..177555707,-p2@Fh1
Mm9::chr1:67163084..67163097,-p@chr1:67163084..67163097
-
Mm9::chr1:67170213..67170233,+p@chr1:67170213..67170233
+
Mm9::chr1:67223896..67223900,+p@chr1:67223896..67223900
+
Mm9::chr1:67256157..67256169,+p@chr1:67256157..67256169
+
Mm9::chr2:172973544..172973561,-p@chr2:172973544..172973561
-
Mm9::chr2:172973623..172973653,-p@chr2:172973623..172973653
-
Mm9::chr2:172978561..172978581,+p1@Pck1
Mm9::chr2:172979505..172979535,-p@chr2:172979505..172979535
-
Mm9::chr2:31315907..31315917,-p@chr2:31315907..31315917
-
Mm9::chr2:31315950..31315966,-p@chr2:31315950..31315966
-
Mm9::chr2:31317677..31317701,+p@chr2:31317677..31317701
+
Mm9::chr2:31325808..31325830,+p1@Ass1
Mm9::chr2:31344594..31344598,+p@chr2:31344594..31344598
+
Mm9::chr2:31347835..31347858,+p@chr2:31347835..31347858
+
Mm9::chr2:31365550..31365556,+p@chr2:31365550..31365556
+
Mm9::chr2:31366452..31366457,+p@chr2:31366452..31366457
+
Mm9::chr2:5598001..5598015,-p@chr2:5598001..5598015
-
Mm9::chr2:5598029..5598039,-p@chr2:5598029..5598039
-
Mm9::chr2:58642586..58642602,+p@chr2:58642586..58642602
+
Mm9::chr2:65391875..65391885,+p@chr2:65391875..65391885
+
Mm9::chr2:65391906..65391913,+p@chr2:65391906..65391913
+
Mm9::chr3:130320482..130320501,+p1@Agxt2l1
Mm9::chr3:157572560..157572571,-p@chr3:157572560..157572571
-
Mm9::chr3:157587823..157587841,-p2@Cth
Mm9::chr3:157588020..157588034,-p1@Cth
Mm9::chr4:115168734..115168752,-p1@Cyp4a14
Mm9::chr4:120647611..120647628,-p@chr4:120647611..120647628
-
Mm9::chr4:134474281..134474330,-p@chr4:134474281..134474330
-
Mm9::chr4:154951564..154951575,+p@chr4:154951564..154951575
+
Mm9::chr4:49420914..49420917,-p@chr4:49420914..49420917
-
Mm9::chr5:120922826..120922839,-p2@Sdsl
Mm9::chr5:120926531..120926547,+p1@Sds
Mm9::chr5:123621970..123621996,-p@chr5:123621970..123621996
-
Mm9::chr5:128113285..128113316,-p2@Slc15a4
Mm9::chr5:128113630..128113633,-p3@Slc15a4
Mm9::chr5:128137865..128137870,+p@chr5:128137865..128137870
+
Mm9::chr5:130499098..130499103,-p@chr5:130499098..130499103
-
Mm9::chr5:130500150..130500227,-p1@Asl
Mm9::chr5:146691632..146691633,-p2@Cyp3a11
Mm9::chr5:77380741..77380820,+p1@Paics
Mm9::chr5:77380824..77380836,+p3@Paics
Mm9::chr5:93579160..93579171,+p@chr5:93579160..93579171
+
Mm9::chr6:117129226..117129253,+p@chr6:117129226..117129253
+
Mm9::chr6:141824569..141824571,+p@chr6:141824569..141824571
+
Mm9::chr6:23082920..23082956,-p1@Aass
Mm9::chr6:23082981..23082992,-p2@Aass
Mm9::chr6:82020755..82020763,+p@chr6:82020755..82020763
+
Mm9::chr6:90313294..90313311,+p@chr6:90313294..90313311
+
Mm9::chr6:90424291..90424301,+p@chr6:90424291..90424301
+
Mm9::chr6:90509385..90509408,+p@chr6:90509385..90509408
+
Mm9::chr7:133819724..133819745,-p@chr7:133819724..133819745
-
Mm9::chr7:51722034..51722044,+p@chr7:51722034..51722044
+
Mm9::chr7:71042282..71042311,+p@chr7:71042282..71042311
+
Mm9::chr8:108659769..108659789,+p@chr8:108659769..108659789
+
Mm9::chr8:24303998..24304003,-p@chr8:24303998..24304003
-
Mm9::chr8:41741374..41741380,-p@chr8:41741374..41741380
-
Mm9::chr8:41947593..41947602,-p@chr8:41947593..41947602
-
Mm9::chr8:73247486..73247504,-p@chr8:73247486..73247504
-
Mm9::chr8:87417057..87417068,-p5@Gcdh
Mm9::chr9:44609861..44609874,-p@chr9:44609861..44609874
-
Mm9::chr9:48413084..48413105,-p1@Nnmt
Mm9::chr9:48413112..48413123,-p4@Nnmt
Mm9::chr9:48413178..48413189,-p7@Nnmt
Mm9::chr9:48413190..48413205,-p2@Nnmt
Mm9::chr9:48413209..48413221,-p3@Nnmt
Mm9::chr9:48413225..48413238,-p5@Nnmt
Mm9::chr9:48413252..48413263,-p6@Nnmt
Mm9::chr9:62193194..62193212,+p@chr9:62193194..62193212
+
Mm9::chr9:65083686..65083691,+p@chr9:65083686..65083691
+
Mm9::chrX:7770513..7770523,-p4@Ebp


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data




Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>



TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs