Personal tools

UBERON:0002105

From FANTOM5_SSTAR

Revision as of 11:11, 12 September 2014 by Autoedit (talk | contribs)
Jump to: navigation, search

Name:vestibulo-auditory system
Definition:"A sensory system for the sense of hearing[WP]." [Wikipedia:Auditory_system]
Xrefs:
links:

AAO:0000631
FMA:7192
FMA:78500
[1]
[2]
MA:0002443
ncithesaurus:Auditory_System
NIF_GrossAnatomy:nlx_anat_090817
OpenCyc:Mx4rvViwtJwpEbGdrcN5Y29ycA
TAO:0001138
XAO:0003195

ZFA:0001138
Synonyms: "auditory organ system" EXACT []
"auditory system" RELATED []
"auditory/vestibular system" RELATED []
"vestibuloauditory system" EXACT []
"vestibuloauditory system" RELATED []
Comments:Auditory system is general anatomical term in FMA
Alt_id: UBERON:FMA_7192-MA_0002443
Subset: functional_classification
uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0001032(sensory system)



Children

part of:UBERON:0001690 (ear),UBERON:0002827 (vestibulocochlear ganglion),UBERON:0004681 (vestibular system),UBERON:0016490 (auditory system)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Mouse (Mus musculus)

  • 11959-126C6 (Neurons - spiral ganglion, pool1)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002105 (vestibulo-auditory system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_c61890a629f48235895cf0426ce3701cp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528371..182528385,+#_c61890a629f48235895cf0426ce3701cp@chr1:182528371..182528385, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_c61890a629f48235895cf0426ce3701cp@chr14:31283085..31283097, -
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_c61890a629f48235895cf0426ce3701cp@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_c61890a629f48235895cf0426ce3701cp@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_c61890a629f48235895cf0426ce3701cp@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_c61890a629f48235895cf0426ce3701cp@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983102..13983126,+#_c61890a629f48235895cf0426ce3701cp@chr17:13983102..13983126, +
1.87e-86FFCP PHASE2:Mm9::chr3:100724698..100724706,+#_c61890a629f48235895cf0426ce3701cp@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619378..30619412,-#_c61890a629f48235895cf0426ce3701cp11@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_c61890a629f48235895cf0426ce3701cp@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536797..10536802,-#_c61890a629f48235895cf0426ce3701cp@chr19:10536797..10536802, -
1.87e-86FFCP PHASE2:Mm9::chr9:56208792..56208814,-#_c61890a629f48235895cf0426ce3701cp@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207887..42207960,-#_c61890a629f48235895cf0426ce3701cp1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_c61890a629f48235895cf0426ce3701cp@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_c61890a629f48235895cf0426ce3701cp4@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr16:93971325..93971337,-#_c61890a629f48235895cf0426ce3701cp@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_c61890a629f48235895cf0426ce3701cp@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_c61890a629f48235895cf0426ce3701cp1@Kncn
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_c61890a629f48235895cf0426ce3701cp@chr17:13983160..13983167, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_c61890a629f48235895cf0426ce3701cp1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:93235253..93235264,+#_c61890a629f48235895cf0426ce3701cp@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_c61890a629f48235895cf0426ce3701cp@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_c61890a629f48235895cf0426ce3701cp1@Tectb
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_c61890a629f48235895cf0426ce3701cp1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_c61890a629f48235895cf0426ce3701cp@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_c61890a629f48235895cf0426ce3701cp@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_c61890a629f48235895cf0426ce3701cp5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_c61890a629f48235895cf0426ce3701cp@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_c61890a629f48235895cf0426ce3701cp10@Otof
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_c61890a629f48235895cf0426ce3701cp21@Espn
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_c61890a629f48235895cf0426ce3701cp@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_c61890a629f48235895cf0426ce3701cp2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_c61890a629f48235895cf0426ce3701cp@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_c61890a629f48235895cf0426ce3701cp1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr17:31335869..31335899,-#_c61890a629f48235895cf0426ce3701cp1@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_c61890a629f48235895cf0426ce3701cp@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_c61890a629f48235895cf0426ce3701cp@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_c61890a629f48235895cf0426ce3701cp@chr13:78257491..78257498, +
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_c61890a629f48235895cf0426ce3701cp2@Tomt
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_c61890a629f48235895cf0426ce3701cp@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_c61890a629f48235895cf0426ce3701cp@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr14:47293487..47293493,-#_c61890a629f48235895cf0426ce3701cp@chr14:47293487..47293493, -
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_c61890a629f48235895cf0426ce3701cp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_c61890a629f48235895cf0426ce3701cp@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_c61890a629f48235895cf0426ce3701cp@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_c61890a629f48235895cf0426ce3701cp10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:128881546..128881553,-#_c61890a629f48235895cf0426ce3701cp@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_c61890a629f48235895cf0426ce3701cp3@Otogl
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_c61890a629f48235895cf0426ce3701cp@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr3:81012915..81012923,+#_c61890a629f48235895cf0426ce3701cp@chr3:81012915..81012923, +
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_c61890a629f48235895cf0426ce3701cp@chr7:133957514..133957529, +
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_c61890a629f48235895cf0426ce3701cp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_c61890a629f48235895cf0426ce3701cp@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_c61890a629f48235895cf0426ce3701cp3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr18:81314626..81314636,+#_c61890a629f48235895cf0426ce3701cp@chr18:81314626..81314636, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_c61890a629f48235895cf0426ce3701cp2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_c61890a629f48235895cf0426ce3701cp@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_c61890a629f48235895cf0426ce3701cp10@Tecta
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_c61890a629f48235895cf0426ce3701cp@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_c61890a629f48235895cf0426ce3701cp5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_c61890a629f48235895cf0426ce3701cp7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_c61890a629f48235895cf0426ce3701cp15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_c61890a629f48235895cf0426ce3701cp@chr3:58626291..58626298, -
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_c61890a629f48235895cf0426ce3701cp@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_c61890a629f48235895cf0426ce3701cp7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_c61890a629f48235895cf0426ce3701cp@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_c61890a629f48235895cf0426ce3701cp3@Kncn
1.87e-86FFCP PHASE1:Mm9::chr16:45693840..45693856,-#_c61890a629f48235895cf0426ce3701cp1@Tmprss7
1.87e-86FFCP PHASE1:Mm9::chr12:77084875..77084885,+#_c61890a629f48235895cf0426ce3701cp@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_c61890a629f48235895cf0426ce3701cp@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_c61890a629f48235895cf0426ce3701cp@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_c61890a629f48235895cf0426ce3701cp@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_c61890a629f48235895cf0426ce3701cp@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_c61890a629f48235895cf0426ce3701cp7@Tecta
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_c61890a629f48235895cf0426ce3701cp6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr19:4140290..4140321,+#_c61890a629f48235895cf0426ce3701cp2@Gpr152
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_c61890a629f48235895cf0426ce3701cp@chr11:114603036..114603048, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_c61890a629f48235895cf0426ce3701cp@chr16:93971325..93971337, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508046..13508055,+#_c61890a629f48235895cf0426ce3701cp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_c61890a629f48235895cf0426ce3701cp@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_c61890a629f48235895cf0426ce3701cp6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_c61890a629f48235895cf0426ce3701cp2@Strc
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_c61890a629f48235895cf0426ce3701cp@chr17:27252925..27252939, +
1.87e-86FFCP PHASE1:Mm9::chr13:37195838..37195870,-#_c61890a629f48235895cf0426ce3701cp@chr13:37195838..37195870, -
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_c61890a629f48235895cf0426ce3701cp9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_c61890a629f48235895cf0426ce3701cp@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_c61890a629f48235895cf0426ce3701cp1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_c61890a629f48235895cf0426ce3701cp@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_c61890a629f48235895cf0426ce3701cp@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_c61890a629f48235895cf0426ce3701cp@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_c61890a629f48235895cf0426ce3701cp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_c61890a629f48235895cf0426ce3701cp@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_c61890a629f48235895cf0426ce3701cp2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_c61890a629f48235895cf0426ce3701cp@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_c61890a629f48235895cf0426ce3701cp@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_c61890a629f48235895cf0426ce3701cp@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_c61890a629f48235895cf0426ce3701cp13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_c61890a629f48235895cf0426ce3701cp@chr3:100724698..100724706, +
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_c61890a629f48235895cf0426ce3701cp@chr11:11599532..11599539, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "The sensory system used for balance and hearing.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002105&oldid=3274052"