User contributions for Marina
From FANTOM5_SSTAR
31 August 2012
- 11:0911:09, 31 August 2012 diff hist +2,695 N OP-HELICOS-CAGE-Filtering-v1.0 Created page with "Protocol: OP-HELICOS-CAGE-Filtering-v1.0 Author: Katayama, Shintaro Created: July 8, 2010 Updated: July 16, 2010 Parameters: Description: FilterSMS in helisphere-0.14.a..." current
- 11:0811:08, 31 August 2012 diff hist +1,807 N OP-HELISCOPE-sequencing-v1.0 Created page with "Protocol: OP-HELISCOPE-sequencing-v1.0 Author: Kawashima, Tsugumi Created: Apr 11th, 2011 Update: Apr 11th, 2011 Parameters: machine, run, flowcell, channel Description:..."
- 11:0611:06, 31 August 2012 diff hist +6,403 N OP-HELISCOPE-CAGE-v4.0 Created page with "Protocol: OP-HELISCOPE-CAGE-v4.0 Author: Kojima, Miki Created: Apr. 28, 2011 Update: Parameters: Description: Sample preparation unit is 96 wells. Sample is prepared b..." current
- 11:0511:05, 31 August 2012 diff hist +5,338 N OP-HELISCOPE-CAGE-v5.0 Created page with "Protocol: OP-HELISCOPE-CAGE-v5.0 Author: Kojima, Miki Created: Nov. 25, 2010 Update: Parameters: Description: Start total RNA amount is under 1. µg Sample preparation..." current
- 11:0511:05, 31 August 2012 diff hist +12 Protocols:Low quantity HeliScopeCAGE No edit summary current
- 11:0311:03, 31 August 2012 diff hist +5,201 N OP-HELISCOPE-CAGE-v3.12 Created page with "Protocol: OP-HELISCOPE-CAGE-v3.12 Author: Kojima, Miki Created: Nov. 25, 2010 Update: Parameters: Description: Sample preparation unit is 8 strips. Reagent and sample ..." current
- 11:0311:03, 31 August 2012 diff hist +16 Protocols:HeliScopeCAGE No edit summary current
- 11:0011:00, 31 August 2012 diff hist +156 Protocols:RNA extraction No edit summary
- 10:4910:49, 31 August 2012 diff hist −4 Protocols:RNA extraction No edit summary
- 10:4810:48, 31 August 2012 diff hist +862 N OP-RNA-extraction-totalRNA-RiboPure minelute cleanup-v1.0 Created page with "Protocol: OP-RNA-extraction-totalRNA-RiboPure_minelute_cleanup-v1.0 Protocol name: Ribopure Blood RNA extraction and RNeasy MinElute Cleanup protocol Version: v1.0 Author: Amb..." current
- 10:4710:47, 31 August 2012 diff hist +4 Protocols:RNA extraction No edit summary
30 August 2012
- 16:3216:32, 30 August 2012 diff hist −1,433 Protocols:HeliScopeCAGE No edit summary
- 15:5315:53, 30 August 2012 diff hist +52 Protocols:nanoCAGEscan No edit summary
- 15:5115:51, 30 August 2012 diff hist −64 Protocols:HeliScopeCAGE →Known facts about HeliScope technology
- 14:5014:50, 30 August 2012 diff hist +1,497 Protocols:HeliScopeCAGE No edit summary
- 14:4014:40, 30 August 2012 diff hist +29 Protocols:HeliScopeCAGE read alignment No edit summary
- 12:0812:08, 30 August 2012 diff hist +394 N Protocols:nanoCAGEscan Created page with "CAGEscan libraries are prepared using the nanoCAGE protocol, version 1.4 (OP-SOLEXA-nanoCAGE-Direct-v1.4), and sequenced paired-end according to standard procedures on Illumin..."
- 12:0712:07, 30 August 2012 diff hist +610 N Protocols:HeliScopeCAGE read alignment Created page with "The data sequenced on Heliscope sequencers are post processed, in order to: *Discard the CAGE tags derived from the ribosomal DNA repeating unit, which is not contained in ..."
- 12:0412:04, 30 August 2012 diff hist +434 N Protocols:Low quantity HeliScopeCAGE Created page with "We started HeliScope CAGE with manual operation (with multi(8)-channel pipet), and achieved also automated preparation of the CAGE libraries to scale up the number of profiles..."
- 12:0412:04, 30 August 2012 diff hist −67 Protocols:HeliScopeCAGE No edit summary
- 12:0212:02, 30 August 2012 diff hist +553 N Protocols:HeliScopeCAGE Created page with "We started HeliScope CAGE with manual operation (with multi(8)-channel pipet), and achieved also automated preparation of the CAGE libraries to scale up the number of profiles..."
- 11:5511:55, 30 August 2012 diff hist +498 N Protocols:rRNAdust Created page with "This step is required to remove reads corresponding to rRNA from Helicos CAGE datasets. Since the error rate of Helicos is high and includes many insertion / deletion errors..."
- 11:3711:37, 30 August 2012 diff hist +315 N Protocols:RNA extraction Created page with "We have used various RNA extraction protocols in FANTOM project. *OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0 *OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0 *OP-RNA-ex..."
