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UBERON:0001434

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Name:skeletal system
Definition:"Organ system subdivision which consists of the skeleton and the articular system.[FMA]" [AAO:0000566, FMA:FMA, Wikipedia:Skeleton]
Xrefs:
links:

AAO:0000566
BTO:0001486
EFO:0000806
EHDAA2:0003168
EV:0100139
FMA:23881
MA:0000018
MESH:A.02
ncithesaurus:Skeletal_System
OpenCyc:Mx4rvVi1rpwpEbGdrcN5Y29ycA
TAO:0000434
VAO:0000027
VHOG:0001254
XAO:0003060

ZFA:0000434
Synonyms: "set of all bones and joints" NARROW SENSU []
"skeleton system" EXACT []
"Skelettsystem" RELATED [BTO:0001486]
Comments:Note that GO defines skeletal system very generically: The skeleton is the bony framework of the body in vertebrates (endoskeleton) or the hard outer envelope of insects (exoskeleton or dermoskeleton) GO:0001501; however, all annotations are to vertebrates
Alt_id: UBERON:FMA_23875-FMA_23881-MA_0000018-MIAA_0000032-XAO_0003060-ZFA_0000434
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000467(anatomical system),UBERON:0004120(mesoderm-derived structure)
disjoint_from:UBERON:0001474(bone element),UBERON:0002204(musculoskeletal system),UBERON:0002294(biliary system),UBERON:0002330(exocrine system),UBERON:0002390(hematopoietic system),UBERON:0002405(immune system),UBERON:0002416(integumental system),UBERON:0002423(hepatobiliary system),UBERON:0004456(entire sense organ system)
part_of:UBERON:0002204(musculoskeletal system)



Children

disjoint from:UBERON:0000949 (endocrine system),UBERON:0000990 (reproductive system),UBERON:0001004 (respiratory system),UBERON:0001007 (digestive system),UBERON:0001008 (renal system),UBERON:0001009 (circulatory system),UBERON:0001016 (nervous system),UBERON:0001033 (gustatory system)
part of:UBERON:0000075 (subdivision of skeletal system),UBERON:0001474 (bone element),UBERON:0004288 (skeleton),UBERON:0004765 (skeletal element),UBERON:0004770 (articular system),UBERON:0008846 (skeletal ligament)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001434 (skeletal system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data