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MCL coexpression mm9:80

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Phase1 CAGE Peaks

 Short description
Mm9::chr11:3001248..3001289,+p@chr11:3001248..3001289
+
Mm9::chr11:3001283..3001292,-p@chr11:3001283..3001292
-
Mm9::chr11:3001727..3001739,+p@chr11:3001727..3001739
+
Mm9::chr11:3002276..3002279,+p@chr11:3002276..3002279
+
Mm9::chr11:3004247..3004290,+p@chr11:3004247..3004290
+
Mm9::chr11:3004719..3004730,+p@chr11:3004719..3004730
+
Mm9::chr11:55209010..55209019,-p@chr11:55209010..55209019
-
Mm9::chr11:94812981..94812986,+p@chr11:94812981..94812986
+
Mm9::chr12:3110066..3110084,-p@chr12:3110066..3110084
-
Mm9::chr12:48934950..48934962,-p@chr12:48934950..48934962
-
Mm9::chr12:48935035..48935049,+p@chr12:48935035..48935049
+
Mm9::chr12:48935068..48935078,-p@chr12:48935068..48935078
-
Mm9::chr12:68160884..68160910,-p@chr12:68160884..68160910
-
Mm9::chr12:75904852..75904862,+p@chr12:75904852..75904862
+
Mm9::chr12:75904955..75904958,-p@chr12:75904955..75904958
-
Mm9::chr12:75905257..75905268,+p@chr12:75905257..75905268
+
Mm9::chr13:6403959..6403978,-p@chr13:6403959..6403978
-
Mm9::chr13:77578167..77578170,+p@chr13:77578167..77578170
+
Mm9::chr13:77578235..77578285,+p@chr13:77578235..77578285
+
Mm9::chr13:77578273..77578319,-p@chr13:77578273..77578319
-
Mm9::chr15:97806449..97806482,-p@chr15:97806449..97806482
-
Mm9::chr15:97806539..97806550,-p@chr15:97806539..97806550
-
Mm9::chr15:97806574..97806585,-p@chr15:97806574..97806585
-
Mm9::chr18:56099129..56099139,+p@chr18:56099129..56099139
+
Mm9::chr18:56099221..56099241,+p@chr18:56099221..56099241
+
Mm9::chr2:76558017..76558028,-p@chr2:76558017..76558028
-
Mm9::chr2:98502479..98502502,+p@chr2:98502479..98502502
+
Mm9::chr2:98502598..98502619,+p@chr2:98502598..98502619
+
Mm9::chr2:98502630..98502656,-p@chr2:98502630..98502656
-
Mm9::chr2:98502657..98502667,+p@chr2:98502657..98502667
+
Mm9::chr2:98502831..98502857,+p@chr2:98502831..98502857
+
Mm9::chr2:98502896..98502911,+p@chr2:98502896..98502911
+
Mm9::chr2:98502913..98502935,+p@chr2:98502913..98502935
+
Mm9::chr2:98503021..98503039,-p@chr2:98503021..98503039
-
Mm9::chr2:98503062..98503077,-p@chr2:98503062..98503077
-
Mm9::chr2:98503098..98503118,+p@chr2:98503098..98503118
+
Mm9::chr2:98503132..98503150,-p@chr2:98503132..98503150
-
Mm9::chr2:98503916..98503926,+p@chr2:98503916..98503926
+
Mm9::chr2:98503957..98503962,+p@chr2:98503957..98503962
+
Mm9::chr2:98503975..98504002,+p@chr2:98503975..98504002
+
Mm9::chr2:98504012..98504030,+p@chr2:98504012..98504030
+
Mm9::chr2:98504037..98504048,-p@chr2:98504037..98504048
-
Mm9::chr2:98504172..98504205,+p@chr2:98504172..98504205
+
Mm9::chr2:98504201..98504231,-p@chr2:98504201..98504231
-
Mm9::chr2:98505280..98505291,+p@chr2:98505280..98505291
+
Mm9::chr2:98505312..98505328,-p@chr2:98505312..98505328
-
Mm9::chr2:98506423..98506433,+p@chr2:98506423..98506433
+
Mm9::chr2:98506437..98506455,+p@chr2:98506437..98506455
+
Mm9::chr2:98506438..98506444,-p@chr2:98506438..98506444
-
Mm9::chr2:98506477..98506488,-p@chr2:98506477..98506488
-
Mm9::chr2:98506609..98506620,+p@chr2:98506609..98506620
+
Mm9::chr2:98506621..98506632,+p@chr2:98506621..98506632
+
Mm9::chr2:98506661..98506685,-p@chr2:98506661..98506685
-
Mm9::chr2:98506816..98506850,-p@chr2:98506816..98506850
-
Mm9::chr2:98506906..98506941,+p@chr2:98506906..98506941
+
Mm9::chr2:98506946..98506948,-p@chr2:98506946..98506948
-
Mm9::chr2:98507023..98507046,-p@chr2:98507023..98507046
-
Mm9::chr2:98507171..98507188,-p@chr2:98507171..98507188
-
Mm9::chr2:98507205..98507234,+p@chr2:98507205..98507234
+
Mm9::chr2:98507234..98507266,-p@chr2:98507234..98507266
-
Mm9::chr2:98507383..98507413,+p@chr2:98507383..98507413
+
Mm9::chr2:98507421..98507439,-p@chr2:98507421..98507439
-
Mm9::chr3:56379612..56379623,+p@chr3:56379612..56379623
+
Mm9::chr3:99785240..99785250,-p@chr3:99785240..99785250
-
Mm9::chr4:3016687..3016689,+p@chr4:3016687..3016689
+
Mm9::chr4:3016715..3016734,-p@chr4:3016715..3016734
-
Mm9::chr4:3016941..3016967,-p@chr4:3016941..3016967
-
Mm9::chr4:3017362..3017381,-p@chr4:3017362..3017381
-
Mm9::chr4:3017450..3017457,+p@chr4:3017450..3017457
+
Mm9::chr4:70039176..70039193,+p@chr4:70039176..70039193
+
Mm9::chr4:70039209..70039228,-p@chr4:70039209..70039228
-
Mm9::chr4:70039209..70039250,+p@chr4:70039209..70039250
+
Mm9::chr4:70039253..70039262,+p@chr4:70039253..70039262
+
Mm9::chr4:70039253..70039296,-p@chr4:70039253..70039296
-
Mm9::chr6:103264626..103264643,+p@chr6:103264626..103264643
+
Mm9::chr6:4490674..4490679,+p@chr6:4490674..4490679
+
Mm9::chr6:4490929..4490946,+p@chr6:4490929..4490946
+
Mm9::chr7:134357720..134357758,+p@chr7:134357720..134357758
+
Mm9::chr7:134357764..134357775,+p@chr7:134357764..134357775
+
Mm9::chr7:60250576..60250578,-p@chr7:60250576..60250578
-
Mm9::chr8:101406443..101406453,+p@chr8:101406443..101406453
+
Mm9::chr8:24205973..24205991,-p@chr8:24205973..24205991
-
Mm9::chr8:24206019..24206035,-p@chr8:24206019..24206035
-
Mm9::chr8:24206098..24206110,+p17@Ank1
Mm9::chr8:24206124..24206153,-p@chr8:24206124..24206153
-
Mm9::chr9:24346548..24346568,-p@chr9:24346548..24346568
-
Mm9::chr9:3000091..3000120,+p@chr9:3000091..3000120
+
Mm9::chr9:3000134..3000163,+p@chr9:3000134..3000163
+
Mm9::chr9:3000190..3000216,+p@chr9:3000190..3000216
+
Mm9::chr9:3002328..3002361,+p@chr9:3002328..3002361
+
Mm9::chr9:3002364..3002386,-p@chr9:3002364..3002386
-
Mm9::chr9:3002960..3002984,+p@chr9:3002960..3002984
+
Mm9::chr9:3002991..3003011,-p@chr9:3002991..3003011
-
Mm9::chr9:3004490..3004523,+p@chr9:3004490..3004523
+
Mm9::chr9:3004794..3004817,+p@chr9:3004794..3004817
+
Mm9::chr9:3004821..3004841,-p@chr9:3004821..3004841
-
Mm9::chr9:3005125..3005137,+p@chr9:3005125..3005137
+
Mm9::chr9:3005620..3005636,+p@chr9:3005620..3005636
+
Mm9::chr9:3005917..3005928,+p@chr9:3005917..3005928
+
Mm9::chr9:3015269..3015302,+p1@ENSMUST00000099050
Mm9::chr9:3015698..3015722,+p@chr9:3015698..3015722
+
Mm9::chr9:3015726..3015745,-p@chr9:3015726..3015745
-
Mm9::chr9:3016320..3016336,+p@chr9:3016320..3016336
+
Mm9::chr9:3016878..3016900,+p@chr9:3016878..3016900
+
Mm9::chr9:3016905..3016926,-p@chr9:3016905..3016926
-
Mm9::chr9:3017525..3017543,+p@chr9:3017525..3017543
+
Mm9::chr9:3018961..3018980,+p@chr9:3018961..3018980
+
Mm9::chr9:3018988..3019010,-p@chr9:3018988..3019010
-
Mm9::chr9:3021256..3021283,+p@chr9:3021256..3021283
+
Mm9::chr9:3022177..3022189,+p@chr9:3022177..3022189
+
Mm9::chr9:3022198..3022225,-p@chr9:3022198..3022225
-
Mm9::chr9:3022736..3022762,+p@chr9:3022736..3022762
+
Mm9::chr9:3022909..3022917,-p@chr9:3022909..3022917
-
Mm9::chr9:3024670..3024681,-p@chr9:3024670..3024681
-
Mm9::chr9:3024740..3024777,+p@chr9:3024740..3024777
+
Mm9::chr9:3024775..3024789,-p@chr9:3024775..3024789
-
Mm9::chr9:3025472..3025490,+p@chr9:3025472..3025490
+
Mm9::chr9:3025495..3025532,+p@chr9:3025495..3025532
+
Mm9::chr9:3025531..3025558,-p@chr9:3025531..3025558
-
Mm9::chr9:3025608..3025628,+p@chr9:3025608..3025628
+
Mm9::chr9:3025853..3025873,+p@chr9:3025853..3025873
+
Mm9::chr9:3026477..3026495,+p@chr9:3026477..3026495
+
Mm9::chr9:3026652..3026682,+p@chr9:3026652..3026682
+
Mm9::chr9:3026737..3026769,+p@chr9:3026737..3026769
+
Mm9::chr9:3026768..3026788,-p@chr9:3026768..3026788
-
Mm9::chr9:3027119..3027145,+p@chr9:3027119..3027145
+
Mm9::chr9:3027439..3027468,+p@chr9:3027439..3027468
+
Mm9::chr9:3027475..3027488,-p@chr9:3027475..3027488
-
Mm9::chr9:3029371..3029395,+p@chr9:3029371..3029395
+
Mm9::chr9:3029402..3029420,-p@chr9:3029402..3029420
-
Mm9::chr9:3030155..3030176,+p1@ENSMUST00000099042
Mm9::chr9:3031884..3031894,+p1@ENSMUST00000099056
Mm9::chr9:3032347..3032397,+p@chr9:3032347..3032397
+
Mm9::chr9:3034197..3034209,+p1@ENSMUST00000170073
Mm9::chr9:3035877..3035903,+p@chr9:3035877..3035903
+
Mm9::chr9:3035912..3035922,-p@chr9:3035912..3035922
-
Mm9::chr9:3036070..3036098,+p@chr9:3036070..3036098
+
Mm9::chr9:3036093..3036128,-p@chr9:3036093..3036128
-
Mm9::chr9:3036315..3036343,+p@chr9:3036315..3036343
+
Mm9::chr9:3036347..3036373,-p@chr9:3036347..3036373
-
Mm9::chr9:3036356..3036387,+p@chr9:3036356..3036387
+
Mm9::chr9:3036386..3036397,-p@chr9:3036386..3036397
-
Mm9::chr9:3038013..3038034,+p@chr9:3038013..3038034
+
Mm9::chr9:35112822..35112851,-p@chr9:35112822..35112851
-
Mm9::chr9:35112851..35112875,+p@chr9:35112851..35112875
+
Mm9::chr9:35112882..35112910,-p@chr9:35112882..35112910
-
Mm9::chr9:35112900..35112920,+p@chr9:35112900..35112920
+
Mm9::chr9:35112939..35112950,-p@chr9:35112939..35112950
-
Mm9::chr9:35112951..35112956,-p@chr9:35112951..35112956
-
Mm9::chr9:35112960..35112975,+p@chr9:35112960..35112975
+
Mm9::chr9:35113013..35113053,+p@chr9:35113013..35113053
+
Mm9::chr9:35113014..35113034,-p@chr9:35113014..35113034
-
Mm9::chr9:35113040..35113076,-p@chr9:35113040..35113076
-
Mm9::chrX:139917572..139917600,+p@chrX:139917572..139917600
+
Mm9::chrY:2898756..2898767,-p@chrY:2898756..2898767
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0030020extracellular matrix structural constituent conferring tensile strength0.000219408547866333
GO:0005581collagen0.000219408547866333
GO:0005201extracellular matrix structural constituent0.000407180314410167
GO:0006817phosphate transport0.000407180314410167
GO:0006811ion transport0.000444954605153175
GO:0044420extracellular matrix part0.00051346196154875
GO:0015698inorganic anion transport0.00102119917903084
GO:0006820anion transport0.00125647242166672
GO:0005578proteinaceous extracellular matrix0.00314956257399098
GO:0006810transport0.00764472659050462
GO:0051234establishment of localization0.00764472659050462
GO:0051179localization0.00890739443574867
GO:0022610biological adhesion0.00890739443574867
GO:0007155cell adhesion0.00890739443574867
GO:0016529sarcoplasmic reticulum0.0107682082345419
GO:0016528sarcoplasm0.0117751456770807



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
megakaryocyte progenitor cell1.82e-076
megakaryocyte1.82e-076

Uber Anatomy
Ontology termp-valuen
occipital lobe5.22e-1010
visual cortex5.22e-1010
neocortex5.22e-1010


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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