FFCP PHASE1:Hg19::chr6:30890599..30890626,+
From FANTOM5_SSTAR
| Short description: | p4@VARS2 |
|---|---|
| Species: | Human (Homo sapiens) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_4_at_VARS2_5end |
| Coexpression cluster: | C1044_Renal_amniotic_Mammary_chorionic_bile_prostate_Amniotic |
| Association with transcript: | -254bp_to_uc010jsh.1_5end |
| EntrezGene: | VARS2 |
| HGNC: | 21642 |
| UniProt: | NA |
| Genome view: | ZENBU |
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CAGE Expression
| Sample | p4@VARS2 |
|---|
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| kidney tubule cell | 5.10e-45 | 10 |
| nephron tubule epithelial cell | 5.10e-45 | 10 |
| epithelial cell of nephron | 8.14e-30 | 15 |
| brush border epithelial cell | 5.09e-29 | 3 |
| kidney cortex tubule cell | 5.09e-29 | 3 |
| epithelial cell of proximal tubule | 5.09e-29 | 3 |
| kidney cell | 3.11e-26 | 17 |
| kidney epithelial cell | 3.11e-26 | 17 |
| mammary gland epithelial cell | 4.31e-21 | 4 |
| kidney cortical cell | 1.87e-19 | 12 |
| Ontology term | p-value | n |
|---|---|---|
| nephron tubule epithelium | 5.10e-45 | 10 |
| nephron epithelium | 8.14e-30 | 15 |
| renal tubule | 8.14e-30 | 15 |
| nephron tubule | 8.14e-30 | 15 |
| nephron | 8.14e-30 | 15 |
| uriniferous tubule | 8.14e-30 | 15 |
| nephrogenic mesenchyme | 8.14e-30 | 15 |
| renal cortex tubule | 5.09e-29 | 3 |
| region of nephron tubule | 5.09e-29 | 3 |
| proximal tubule | 5.09e-29 | 3 |
| Ontology term | p-value | n |
|---|---|---|
| cystadenocarcinoma | 4.75e-10 | 1 |
| mucinous cystadenocarcinoma | 4.75e-10 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
