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UBERON:0002546

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Name:cranial placode
Namespace:FANTOM
Definition:"Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" https://github.com/seger/aao/issues/4, UBERON:cjm
Xrefs:
links:

AAO:0010466
MAT:0000369
MIAA:0000369

XAO:0000305
Synonyms: "placode" BROAD [Wikipedia:Placode]
Comments:Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831].
Alt_id: UBERON:MIAA_0000369-XAO_0000305

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005085(ectodermal placode)
part_of:UBERON:0000033(head)



Children

is a:UBERON:0003073 (lens placode),UBERON:0009122 (adenohypophyseal placode),UBERON:0009955 (neurogenic placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002546 (cranial placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.41e-88FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.41e-88FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_e751c663870c04b3e9be3a6d17109921p@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_e751c663870c04b3e9be3a6d17109921p10@Tecta
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_e751c663870c04b3e9be3a6d17109921p1@Tmc1
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_e751c663870c04b3e9be3a6d17109921p@chr2:152453066..152453075, -
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_e751c663870c04b3e9be3a6d17109921p@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_e751c663870c04b3e9be3a6d17109921p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_e751c663870c04b3e9be3a6d17109921p@chr12:13508046..13508055, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_e751c663870c04b3e9be3a6d17109921p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_e751c663870c04b3e9be3a6d17109921p2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_e751c663870c04b3e9be3a6d17109921p@chr13:78257518..78257522, +
1.87e-86FFCP PHASE1:Mm9::chr5:72652660..72652667,+#_e751c663870c04b3e9be3a6d17109921p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_e751c663870c04b3e9be3a6d17109921p9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr9:42207983..42207995,-#_e751c663870c04b3e9be3a6d17109921p3@Tecta
1.87e-86FFCP PHASE2:Mm9::chr4:63079735..63079745,-#_e751c663870c04b3e9be3a6d17109921p@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_e751c663870c04b3e9be3a6d17109921p@chr5:147854240..147854249, -
1.87e-86FFCP PHASE2:Mm9::chr10:107349430..107349440,-#_e751c663870c04b3e9be3a6d17109921p3@Otogl
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_e751c663870c04b3e9be3a6d17109921p2@Strc
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_e751c663870c04b3e9be3a6d17109921p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_e751c663870c04b3e9be3a6d17109921p2@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr14:47293496..47293510,-#_e751c663870c04b3e9be3a6d17109921p@chr14:47293496..47293510, -
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_e751c663870c04b3e9be3a6d17109921p@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_e751c663870c04b3e9be3a6d17109921p7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr14:102297747..102297765,+#_e751c663870c04b3e9be3a6d17109921p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_e751c663870c04b3e9be3a6d17109921p9@Otof
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_e751c663870c04b3e9be3a6d17109921p@chr12:13572961..13572974, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_e751c663870c04b3e9be3a6d17109921p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_e751c663870c04b3e9be3a6d17109921p4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr9:42207375..42207384,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42207375..42207384, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_e751c663870c04b3e9be3a6d17109921p1@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_e751c663870c04b3e9be3a6d17109921p7@Glt25d2
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_e751c663870c04b3e9be3a6d17109921p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_e751c663870c04b3e9be3a6d17109921p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_e751c663870c04b3e9be3a6d17109921p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_e751c663870c04b3e9be3a6d17109921p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_e751c663870c04b3e9be3a6d17109921p@chr3:154459231..154459240, +
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_e751c663870c04b3e9be3a6d17109921p3@Ptprq
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_e751c663870c04b3e9be3a6d17109921p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_e751c663870c04b3e9be3a6d17109921p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr18:38104702..38104718,-#_e751c663870c04b3e9be3a6d17109921p@chr18:38104702..38104718, -
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_e751c663870c04b3e9be3a6d17109921p@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_e751c663870c04b3e9be3a6d17109921p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_e751c663870c04b3e9be3a6d17109921p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_e751c663870c04b3e9be3a6d17109921p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_e751c663870c04b3e9be3a6d17109921p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_e751c663870c04b3e9be3a6d17109921p1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_e751c663870c04b3e9be3a6d17109921p2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_e751c663870c04b3e9be3a6d17109921p18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_e751c663870c04b3e9be3a6d17109921p2@Strc
1.87e-86FFCP PHASE1:Mm9::chr2:136942131..136942142,-#_e751c663870c04b3e9be3a6d17109921p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_e751c663870c04b3e9be3a6d17109921p5@Tecta
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_e751c663870c04b3e9be3a6d17109921p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr6:113251570..113251578,+#_e751c663870c04b3e9be3a6d17109921p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_e751c663870c04b3e9be3a6d17109921p2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_e751c663870c04b3e9be3a6d17109921p2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr8:13414289..13414295,+#_e751c663870c04b3e9be3a6d17109921p@chr8:13414289..13414295, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_e751c663870c04b3e9be3a6d17109921p1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_e751c663870c04b3e9be3a6d17109921p@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_e751c663870c04b3e9be3a6d17109921p13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_e751c663870c04b3e9be3a6d17109921p15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_e751c663870c04b3e9be3a6d17109921p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_e751c663870c04b3e9be3a6d17109921p@chr7:139597684..139597691, +
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_e751c663870c04b3e9be3a6d17109921p3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_e751c663870c04b3e9be3a6d17109921p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_e751c663870c04b3e9be3a6d17109921p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_e751c663870c04b3e9be3a6d17109921p@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_e751c663870c04b3e9be3a6d17109921p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_e751c663870c04b3e9be3a6d17109921p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_e751c663870c04b3e9be3a6d17109921p2@Otogl
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_e751c663870c04b3e9be3a6d17109921p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_e751c663870c04b3e9be3a6d17109921p2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_e751c663870c04b3e9be3a6d17109921p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_e751c663870c04b3e9be3a6d17109921p3@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_e751c663870c04b3e9be3a6d17109921p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_e751c663870c04b3e9be3a6d17109921p@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_e751c663870c04b3e9be3a6d17109921p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_e751c663870c04b3e9be3a6d17109921p1@Otog
1.87e-86FFCP PHASE1:Mm9::chr6:30619443..30619450,-#_e751c663870c04b3e9be3a6d17109921p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_e751c663870c04b3e9be3a6d17109921p4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_e751c663870c04b3e9be3a6d17109921p@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_e751c663870c04b3e9be3a6d17109921p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_e751c663870c04b3e9be3a6d17109921p@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_e751c663870c04b3e9be3a6d17109921p7@Glt25d2
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_e751c663870c04b3e9be3a6d17109921p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_e751c663870c04b3e9be3a6d17109921p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_e751c663870c04b3e9be3a6d17109921p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_e751c663870c04b3e9be3a6d17109921p3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_e751c663870c04b3e9be3a6d17109921p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_e751c663870c04b3e9be3a6d17109921p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_e751c663870c04b3e9be3a6d17109921p@chr6:86745686..86745727, -
1.87e-86FFCP PHASE1:Mm9::chr11:4689776..4689785,-#_e751c663870c04b3e9be3a6d17109921p@chr11:4689776..4689785, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_e751c663870c04b3e9be3a6d17109921p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_e751c663870c04b3e9be3a6d17109921p11@Tecta
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_e751c663870c04b3e9be3a6d17109921p4@uc007rhb.1

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