UBERON:0004151
From FANTOM5_SSTAR
Name: | cardiac chamber | |
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Definition: | "A cardiac chamber surrounds an enclosed cavity within the heart" [GO:0003205] | |
Xrefs: |
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Synonyms: |
"chamber of heart" EXACT [] "heart chamber" EXACT [] | |
Comments: | generic enough to cover FBbt:00003156 heart chamber but this is a cavity. GO defines it as the cavity. TODO - move subclasses. Note this also includes sinus venosus |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0000064(organ part),UBERON:0004120(mesoderm-derived structure) |
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part_of: | UBERON:0000948(heart) |
Children
is a: | UBERON:0002081 (cardiac atrium),UBERON:0002082 (cardiac ventricle) |
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Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10078-102A6 (left ventricle, adult, donor1)
- 10079-102A7 (left atrium, adult, donor1)
- 10207-103F9 (heart - tricuspid valve, adult)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004151 (cardiac chamber), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data