Personal tools

UBERON:0004151

From FANTOM5_SSTAR

Revision as of 11:11, 24 February 2012 by Autoedit (talk | contribs) (Created page with "{{UBERON |id=UBERON:0004151 |name=cardiac chamber |namespace= |def="A cardiac chamber surrounds an enclosed cavity within the heart" [GO:0003205] |xref=FMA:7095;;OpenCyc:...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search

Name:cardiac chamber
Definition:"A cardiac chamber surrounds an enclosed cavity within the heart" [GO:0003205]
Xrefs:
links:

FMA:7095
OpenCyc:Mx4rmexpjPdAEduAAAAOpmP6tw

SCTID:276456008
Synonyms: "chamber of heart" EXACT []
"heart chamber" EXACT []
Comments:generic enough to cover FBbt:00003156 heart chamber but this is a cavity. GO defines it as the cavity. TODO - move subclasses. Note this also includes sinus venosus

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000064(organ part),UBERON:0004120(mesoderm-derived structure)
part_of:UBERON:0000948(heart)



Children

is a:UBERON:0002081 (cardiac atrium),UBERON:0002082 (cardiac ventricle)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004151 (cardiac chamber), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data