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{{DOID
 
{{DOID
|id=DOID:3905
+
|alt_id=
|name=lung carcinoma
 
|namespace=disease_ontology
 
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
 
|xref=NCI:C4878;;OMIM:211980;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:187875007;;SNOMEDCT_2010_1_31:269561006;;UMLS_CUI:C0684249
 
|is_a=DOID:1324
 
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
 
 
|comment=OMIM mapping confirmed by DO. [SN].
 
|comment=OMIM mapping confirmed by DO. [SN].
|alt_id=
 
|disjoint_from=
 
|union_of=
 
 
|created_by=
 
|created_by=
|obo_creation_date=
+
|def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
|subset=
 
 
|derives_from=
 
|derives_from=
 
|develops_from=
 
|develops_from=
 +
|disjoint_from=
 
|has_quality=
 
|has_quality=
 +
|id=DOID:3905
 +
|is_a=DOID:1324
 +
|is_obsolete=
 
|located_in=
 
|located_in=
 +
|name=lung carcinoma
 +
|namespace=disease_ontology
 +
|obo_creation_date=
 
|part_of=
 
|part_of=
 +
|preceded_by=
 
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
 
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo
|is_obsolete=
+
|subset=
|preceded_by=
+
|synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
 +
|union_of=
 +
|xref=NCI:C4878;;OMIM:211980;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:187875007;;SNOMEDCT_2010_1_31:269561006;;UMLS_CUI:C0684249
 
}}
 
}}

Revision as of 01:35, 12 September 2014

Name:lung carcinoma
Namespace:disease_ontology
Definition:"A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html]
Xrefs:
links:

NCI:C4878
OMIM:211980
SNOMEDCT_2010_1_31:154485001
SNOMEDCT_2010_1_31:187875007
SNOMEDCT_2010_1_31:269561006

UMLS_CUI:C0684249
Synonyms: "cancer of lung" EXACT [NCI2004_11_17:C4878]
"carcinoma OF LUNG" EXACT [MTH:460]
"carcinoma of lung" RELATED []
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006]
"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001]
Comments:OMIM mapping confirmed by DO. [SN].

Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:DOID:1324(lung cancer)



Children


is a:DOID:3908 (non-small cell lung carcinoma),DOID:5409 (lung small cell carcinoma)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3905 (lung carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
9.75e-45FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399294..45399301, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:125378873..125378876, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405332..45405343, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399245..45399258, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399533..45399540, +
9.75e-45FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45405393..45405412, +
9.75e-45FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3p@chr6:45399263..45399274, +
4.35e-40FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
4.35e-40FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dcp@chr6:73785930..73785949, -
2.66e-30FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
2.66e-30FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1ep@chr13:70823810..70823813, +
2.66e-30FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399724..45399733, +
2.66e-30FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:45399422..45399430, +
2.66e-30FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786593..73786601, +
2.66e-30FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1ep@chr6:73786620..73786627, +
2.66e-30FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1ep@chr5:92526866..92526914, -
2.66e-30FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1ep@chr8:40525350..40525354, -
3.09e-30FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.09e-30FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3ap@chr18:10085554..10085562, +
3.59e-30FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
3.59e-30FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976p@chr1:156779602..156779619, -
7.5e-29FFCP PHASE2:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
7.5e-29FFCP PHASE1:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03p2@ENST00000457157
8.14e-26FFCP PHASE2:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
8.14e-26FFCP PHASE1:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1cep@chr4:89282612..89282616, +
3.17e-25FFCP PHASE2:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
3.17e-25FFCP PHASE1:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584p8@SFTA3
2.62e-23FFCP PHASE2:Hg19::chr11:98528704..98528712,+#_ff13f51a990286586a726a44f2e602cap@chr11:98528704..98528712, +
2.62e-23FFCP PHASE2:Hg19::chr4:169849979..169849990,-#_ff13f51a990286586a726a44f2e602cap@chr4:169849979..169849990, -
2.62e-23FFCP PHASE2:Hg19::chr2:189756256..189756260,+#_ff13f51a990286586a726a44f2e602cap@chr2:189756256..189756260, +
2.62e-23FFCP PHASE1:Hg19::chr18:73967160..73967162,-#_ff13f51a990286586a726a44f2e602cap@chr18:73967160..73967162, -
2.62e-23FFCP PHASE1:Hg19::chr14:88452922..88452929,-#_ff13f51a990286586a726a44f2e602cap@chr14:88452922..88452929, -
2.62e-23FFCP PHASE2:Hg19::chr6:166575975..166575983,-#_ff13f51a990286586a726a44f2e602cap@chr6:166575975..166575983, -
2.62e-23FFCP PHASE2:Hg19::chr3:63805044..63805054,+#_ff13f51a990286586a726a44f2e602cap1@C3orf49
2.62e-23FFCP PHASE2:Hg19::chr17:39140424..39140431,-#_ff13f51a990286586a726a44f2e602cap4@KRT40
2.62e-23FFCP PHASE1:Hg19::chr2:97626442..97626445,-#_ff13f51a990286586a726a44f2e602cap@chr2:97626442..97626445, -
2.62e-23FFCP PHASE2:Hg19::chr2:97626375..97626385,-#_ff13f51a990286586a726a44f2e602cap@chr2:97626375..97626385, -
2.62e-23FFCP PHASE1:Hg19::chr2:220594730..220594748,+#_ff13f51a990286586a726a44f2e602cap2@ENST00000442416
2.62e-23FFCP PHASE2:Hg19::chr5:33619084..33619089,-#_ff13f51a990286586a726a44f2e602cap@chr5:33619084..33619089, -
2.62e-23FFCP PHASE1:Hg19::chr9:17454025..17454033,+#_ff13f51a990286586a726a44f2e602cap@chr9:17454025..17454033, +
2.62e-23FFCP PHASE2:Hg19::chr2:222160774..222160804,+#_ff13f51a990286586a726a44f2e602cap@chr2:222160774..222160804, +
2.62e-23FFCP PHASE1:Hg19::chr3:87647430..87647437,-#_ff13f51a990286586a726a44f2e602cap@chr3:87647430..87647437, -
2.62e-23FFCP PHASE1:Hg19::chr8:82275651..82275662,+#_ff13f51a990286586a726a44f2e602cap@chr8:82275651..82275662, +
2.62e-23FFCP PHASE2:Hg19::chr2:115929667..115929677,+#_ff13f51a990286586a726a44f2e602cap@chr2:115929667..115929677, +
2.62e-23FFCP PHASE1:Hg19::chr6:31681859..31681865,-#_ff13f51a990286586a726a44f2e602cap3@LY6G6E
2.62e-23FFCP PHASE1:Hg19::chr20:2779313..2779314,-#_ff13f51a990286586a726a44f2e602cap16@CPXM1
2.62e-23FFCP PHASE2:Hg19::chr10:129704562..129704569,+#_ff13f51a990286586a726a44f2e602cap@chr10:129704562..129704569, +
2.62e-23FFCP PHASE1:Hg19::chr3:150914192..150914197,+#_ff13f51a990286586a726a44f2e602cap@chr3:150914192..150914197, +
2.62e-23FFCP PHASE1:Hg19::chr2:241625540..241625541,+#_ff13f51a990286586a726a44f2e602cap14@ENST00000407635
2.62e-23FFCP PHASE1:Hg19::chr14:58045800..58045814,-#_ff13f51a990286586a726a44f2e602cap@chr14:58045800..58045814, -
2.62e-23FFCP PHASE1:Hg19::chr1:188856567..188856573,-#_ff13f51a990286586a726a44f2e602cap2@ENST00000414765
2.62e-23FFCP PHASE2:Hg19::chr3:189838995..189839000,-#_ff13f51a990286586a726a44f2e602cap31@LEPREL1
2.62e-23FFCP PHASE2:Hg19::chr7:44574327..44574332,-#_ff13f51a990286586a726a44f2e602cap@chr7:44574327..44574332, -
2.62e-23FFCP PHASE1:Hg19::chr10:29212181..29212188,+#_ff13f51a990286586a726a44f2e602cap@chr10:29212181..29212188, +
2.62e-23FFCP PHASE1:Hg19::chr6:64762702..64762707,+#_ff13f51a990286586a726a44f2e602cap@chr6:64762702..64762707, +
2.62e-23FFCP PHASE1:Hg19::chr6:154710410..154710428,-#_ff13f51a990286586a726a44f2e602cap@chr6:154710410..154710428, -
2.62e-23FFCP PHASE1:Hg19::chr2:8803669..8803680,-#_ff13f51a990286586a726a44f2e602cap@chr2:8803669..8803680, -
2.62e-23FFCP PHASE2:Hg19::chr7:79840276..79840283,+#_ff13f51a990286586a726a44f2e602cap@chr7:79840276..79840283, +
2.62e-23FFCP PHASE2:Hg19::chr1:33886874..33886882,-#_ff13f51a990286586a726a44f2e602cap@chr1:33886874..33886882, -
2.62e-23FFCP PHASE1:Hg19::chr16:66088105..66088108,-#_ff13f51a990286586a726a44f2e602cap@chr16:66088105..66088108, -
2.62e-23FFCP PHASE1:Hg19::chr4:39301903..39301910,-#_ff13f51a990286586a726a44f2e602cap@chr4:39301903..39301910, -
2.62e-23FFCP PHASE2:Hg19::chr4:3838289..3838308,-#_ff13f51a990286586a726a44f2e602cap@chr4:3838289..3838308, -
2.62e-23FFCP PHASE2:Hg19::chr2:220594710..220594720,+#_ff13f51a990286586a726a44f2e602cap3@ENST00000442416
2.62e-23FFCP PHASE1:Hg19::chr3:86289712..86289720,+#_ff13f51a990286586a726a44f2e602cap@chr3:86289712..86289720, +
2.62e-23FFCP PHASE1:Hg19::chr2:103235035..103235044,+#_ff13f51a990286586a726a44f2e602cap@chr2:103235035..103235044, +
2.62e-23FFCP PHASE2:Hg19::chr3:86929211..86929219,+#_ff13f51a990286586a726a44f2e602cap@chr3:86929211..86929219, +
2.62e-23FFCP PHASE2:Hg19::chr10:129703363..129703373,+#_ff13f51a990286586a726a44f2e602cap@chr10:129703363..129703373, +
2.62e-23FFCP PHASE1:Hg19::chr3:145094664..145094665,+#_ff13f51a990286586a726a44f2e602cap@chr3:145094664..145094665, +
2.62e-23FFCP PHASE1:Hg19::chr8:116215298..116215305,+#_ff13f51a990286586a726a44f2e602cap@chr8:116215298..116215305, +
2.62e-23FFCP PHASE2:Hg19::chr13:95133382..95133389,-#_ff13f51a990286586a726a44f2e602cap@chr13:95133382..95133389, -
2.62e-23FFCP PHASE2:Hg19::chr20:2779236..2779242,-#_ff13f51a990286586a726a44f2e602cap12@CPXM1
2.62e-23FFCP PHASE1:Hg19::chr2:23850233..23850248,+#_ff13f51a990286586a726a44f2e602cap@chr2:23850233..23850248, +
2.62e-23FFCP PHASE1:Hg19::chr14:57021818..57021822,+#_ff13f51a990286586a726a44f2e602cap@chr14:57021818..57021822, +
2.62e-23FFCP PHASE1:Hg19::chr1:181360250..181360259,+#_ff13f51a990286586a726a44f2e602cap@chr1:181360250..181360259, +
2.62e-23FFCP PHASE2:Hg19::chr3:150914094..150914095,+#_ff13f51a990286586a726a44f2e602cap@chr3:150914094..150914095, +
2.62e-23FFCP PHASE2:Hg19::chr8:121815999..121816003,-#_ff13f51a990286586a726a44f2e602cap@chr8:121815999..121816003, -
2.62e-23FFCP PHASE1:Hg19::chr9:9763035..9763040,-#_ff13f51a990286586a726a44f2e602cap@chr9:9763035..9763040, -
2.62e-23FFCP PHASE2:Hg19::chr2:241625475..241625482,+#_ff13f51a990286586a726a44f2e602cap8@ENST00000407635
2.62e-23FFCP PHASE1:Hg19::chr13:109644678..109644725,+#_ff13f51a990286586a726a44f2e602cap@chr13:109644678..109644725, +
2.62e-23FFCP PHASE2:Hg19::chr7:26657673..26657685,-#_ff13f51a990286586a726a44f2e602cap@chr7:26657673..26657685, -
2.62e-23FFCP PHASE1:Hg19::chr8:98051049..98051058,-#_ff13f51a990286586a726a44f2e602cap@chr8:98051049..98051058, -
2.62e-23FFCP PHASE1:Hg19::chr10:129704562..129704569,+#_ff13f51a990286586a726a44f2e602cap@chr10:129704562..129704569, +
2.62e-23FFCP PHASE2:Hg19::chr1:188856517..188856523,-#_ff13f51a990286586a726a44f2e602cap1@ENST00000414765
2.62e-23FFCP PHASE1:Hg19::chr16:11118533..11118538,+#_ff13f51a990286586a726a44f2e602cap12@CLEC16A
2.62e-23FFCP PHASE2:Hg19::chr19:46531131..46531136,+#_ff13f51a990286586a726a44f2e602cap@chr19:46531131..46531136, +
2.62e-23FFCP PHASE1:Hg19::chr8:98108427..98108430,-#_ff13f51a990286586a726a44f2e602cap@chr8:98108427..98108430, -
2.62e-23FFCP PHASE2:Hg19::chr8:98104439..98104444,-#_ff13f51a990286586a726a44f2e602cap@chr8:98104439..98104444, -