DOID:3905: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(One intermediate revision by the same user not shown) | |||
Line 1: | Line 1: | ||
{{DOID | {{DOID | ||
| | |alt_id= | ||
|comment=OMIM mapping confirmed by DO. [SN]. | |comment=OMIM mapping confirmed by DO. [SN]. | ||
|created_by= | |created_by= | ||
| | |def="A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html] | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|disjoint_from= | |||
|has_quality= | |has_quality= | ||
|id=DOID:3905 | |||
|is_a=DOID:1324 | |||
|is_obsolete= | |||
|located_in= | |located_in= | ||
|name=lung carcinoma | |||
|namespace=FANTOM | |||
|obo_creation_date= | |||
|part_of= | |part_of= | ||
|preceded_by= | |||
|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | |property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | ||
| | |subset= | ||
| | |synonym="cancer of lung" EXACT [NCI2004_11_17:C4878];;"carcinoma OF LUNG" EXACT [MTH:460];;"carcinoma of lung" RELATED [];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006];;"lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001] | ||
|union_of= | |||
|xref=NCI:C4878;;OMIM:211980;;SNOMEDCT_2010_1_31:154485001;;SNOMEDCT_2010_1_31:187875007;;SNOMEDCT_2010_1_31:269561006;;UMLS_CUI:C0684249 | |||
}} | }} |
Latest revision as of 16:51, 12 September 2014
Name: | lung carcinoma | ||
---|---|---|---|
Namespace: | FANTOM | ||
Definition: | "A lung cancer that is located_in the lungs and has_symptom cough and has_symptom chest discomfort or pain and has_symptom weight loss and has_symptom hemoptysis." [url:https://merck.com/mmpe/sec05/ch062/ch062b.html] | ||
Xrefs: |
| ||
Synonyms: |
"cancer of lung" EXACT [NCI2004_11_17:C4878] "carcinoma OF LUNG" EXACT [MTH:460] "carcinoma of lung" RELATED [] "lung carcinoma" EXACT [SNOMEDCT_2005_07_31:269561006] "lung carcinoma" EXACT [SNOMEDCT_2005_07_31:154485001] | ||
Comments: | OMIM mapping confirmed by DO. [SN]. |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | DOID:1324(lung cancer) |
---|
Children
is a: | DOID:3908 (non-small cell lung carcinoma),DOID:5409 (lung small cell carcinoma) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10462-106H3
- 10468-106H9
- 10502-107C7
- 10503-107C8
- 10504-107C9
- 10505-107D1
- 10506-107D2
- 10509-107D5 (large cell lung carcinoma cell line:IA-LM)
- 10524-107F2
- 10525-107F3
... further results Mouse (Mus musculus)
- 10462-106H3
- 10468-106H9
- 10502-107C7
- 10503-107C8
- 10504-107C9
- 10505-107D1
- 10506-107D2
- 10509-107D5 (large cell lung carcinoma cell line:IA-LM)
- 10524-107F2
- 10525-107F3
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:3905 (lung carcinoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
9.75e-45 | FFCP PHASE2:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3 | p@chr6:45399294..45399301, + |
9.75e-45 | FFCP PHASE2:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3 | p@chr6:125378873..125378876, + |
9.75e-45 | FFCP PHASE1:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3 | p@chr6:45405332..45405343, + |
9.75e-45 | FFCP PHASE1:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3 | p@chr6:45399245..45399258, + |
9.75e-45 | FFCP PHASE1:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3 | p@chr6:45399533..45399540, + |
9.75e-45 | FFCP PHASE1:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3 | p@chr6:45405393..45405412, + |
9.75e-45 | FFCP PHASE2:Hg19::chr6:45405332..45405343,+#_d8941396dd1289c6047716a76ac60ff3 | p@chr6:45405332..45405343, + |
9.75e-45 | FFCP PHASE1:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3 | p@chr6:45399263..45399274, + |
9.75e-45 | FFCP PHASE2:Hg19::chr6:45399245..45399258,+#_d8941396dd1289c6047716a76ac60ff3 | p@chr6:45399245..45399258, + |
9.75e-45 | FFCP PHASE2:Hg19::chr6:45399533..45399540,+#_d8941396dd1289c6047716a76ac60ff3 | p@chr6:45399533..45399540, + |
9.75e-45 | FFCP PHASE2:Hg19::chr6:45405393..45405412,+#_d8941396dd1289c6047716a76ac60ff3 | p@chr6:45405393..45405412, + |
9.75e-45 | FFCP PHASE2:Hg19::chr6:45399263..45399274,+#_d8941396dd1289c6047716a76ac60ff3 | p@chr6:45399263..45399274, + |
9.75e-45 | FFCP PHASE1:Hg19::chr6:45399294..45399301,+#_d8941396dd1289c6047716a76ac60ff3 | p@chr6:45399294..45399301, + |
9.75e-45 | FFCP PHASE1:Hg19::chr6:125378873..125378876,+#_d8941396dd1289c6047716a76ac60ff3 | p@chr6:125378873..125378876, + |
4.35e-40 | FFCP PHASE2:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dc | p@chr6:73785930..73785949, - |
4.35e-40 | FFCP PHASE1:Hg19::chr6:73785930..73785949,-#_63c78ab1a3b8986f5f523383f41275dc | p@chr6:73785930..73785949, - |
2.66e-30 | FFCP PHASE1:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1e | p@chr6:45399422..45399430, + |
2.66e-30 | FFCP PHASE1:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1e | p@chr6:73786593..73786601, + |
2.66e-30 | FFCP PHASE2:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1e | p@chr6:45399724..45399733, + |
2.66e-30 | FFCP PHASE1:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1e | p@chr5:92526866..92526914, - |
2.66e-30 | FFCP PHASE2:Hg19::chr6:45399422..45399430,+#_731a82d29cb8eb0e261f77134811de1e | p@chr6:45399422..45399430, + |
2.66e-30 | FFCP PHASE1:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1e | p@chr6:73786620..73786627, + |
2.66e-30 | FFCP PHASE2:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1e | p@chr13:70823810..70823813, + |
2.66e-30 | FFCP PHASE2:Hg19::chr6:73786593..73786601,+#_731a82d29cb8eb0e261f77134811de1e | p@chr6:73786593..73786601, + |
2.66e-30 | FFCP PHASE2:Hg19::chr5:92526866..92526914,-#_731a82d29cb8eb0e261f77134811de1e | p@chr5:92526866..92526914, - |
2.66e-30 | FFCP PHASE2:Hg19::chr6:73786620..73786627,+#_731a82d29cb8eb0e261f77134811de1e | p@chr6:73786620..73786627, + |
2.66e-30 | FFCP PHASE1:Hg19::chr13:70823810..70823813,+#_731a82d29cb8eb0e261f77134811de1e | p@chr13:70823810..70823813, + |
2.66e-30 | FFCP PHASE1:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1e | p@chr8:40525350..40525354, - |
2.66e-30 | FFCP PHASE1:Hg19::chr6:45399724..45399733,+#_731a82d29cb8eb0e261f77134811de1e | p@chr6:45399724..45399733, + |
2.66e-30 | FFCP PHASE2:Hg19::chr8:40525350..40525354,-#_731a82d29cb8eb0e261f77134811de1e | p@chr8:40525350..40525354, - |
3.09e-30 | FFCP PHASE1:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3a | p@chr18:10085554..10085562, + |
3.09e-30 | FFCP PHASE2:Hg19::chr18:10085554..10085562,+#_6ab758267c516e266b3cc84006025e3a | p@chr18:10085554..10085562, + |
3.59e-30 | FFCP PHASE1:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976 | p@chr1:156779602..156779619, - |
3.59e-30 | FFCP PHASE2:Hg19::chr1:156779602..156779619,-#_b0a10e90ac2aa3a790fb9716f2bbd976 | p@chr1:156779602..156779619, - |
7.5e-29 | FFCP PHASE1:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03 | p2@ENST00000457157 |
7.5e-29 | FFCP PHASE2:Hg19::chr21:37377429..37377443,+#_d0518c616b4f4645db245080ba4c6f03 | p2@ENST00000457157 |
8.14e-26 | FFCP PHASE1:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1ce | p@chr4:89282612..89282616, + |
8.14e-26 | FFCP PHASE2:Hg19::chr4:89282612..89282616,+#_d620c4dda050ed3d00bebc254948b1ce | p@chr4:89282612..89282616, + |
3.17e-25 | FFCP PHASE2:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584 | p8@SFTA3 |
3.17e-25 | FFCP PHASE1:Hg19::chr14:36982707..36982717,-#_dc0ca4292e777cec68d90532f4c7e584 | p8@SFTA3 |
2.62e-23 | FFCP PHASE2:Hg19::chr15:96959907..96959930,+#_ff13f51a990286586a726a44f2e602ca | p@chr15:96959907..96959930, + |
2.62e-23 | FFCP PHASE1:Hg19::chr7:79840323..79840338,+#_ff13f51a990286586a726a44f2e602ca | p@chr7:79840323..79840338, + |
2.62e-23 | FFCP PHASE2:Hg19::chr9:226208..226216,-#_ff13f51a990286586a726a44f2e602ca | p@chr9:226208..226216, - |
2.62e-23 | FFCP PHASE2:Hg19::chr8:82275651..82275662,+#_ff13f51a990286586a726a44f2e602ca | p@chr8:82275651..82275662, + |
2.62e-23 | FFCP PHASE2:Hg19::chr2:234862417..234862434,+#_ff13f51a990286586a726a44f2e602ca | p6@TRPM8 |
2.62e-23 | FFCP PHASE2:Hg19::chr2:130568628..130568649,+#_ff13f51a990286586a726a44f2e602ca | p@chr2:130568628..130568649, + |
2.62e-23 | FFCP PHASE2:Hg19::chr17:63511856..63511858,-#_ff13f51a990286586a726a44f2e602ca | p@chr17:63511856..63511858, - |
2.62e-23 | FFCP PHASE1:Hg19::chr3:102635473..102635480,-#_ff13f51a990286586a726a44f2e602ca | p@chr3:102635473..102635480, - |
2.62e-23 | FFCP PHASE1:Hg19::chr2:222160774..222160804,+#_ff13f51a990286586a726a44f2e602ca | p@chr2:222160774..222160804, + |
2.62e-23 | FFCP PHASE1:Hg19::chr14:60194070..60194083,-#_ff13f51a990286586a726a44f2e602ca | p25@RTN1 |
2.62e-23 | FFCP PHASE1:Hg19::chr13:92571252..92571265,-#_ff13f51a990286586a726a44f2e602ca | p@chr13:92571252..92571265, - |
2.62e-23 | FFCP PHASE2:Hg19::chr7:26590563..26590574,-#_ff13f51a990286586a726a44f2e602ca | p@chr7:26590563..26590574, - |
2.62e-23 | FFCP PHASE2:Hg19::chr2:135170047..135170048,+#_ff13f51a990286586a726a44f2e602ca | p@chr2:135170047..135170048, + |
2.62e-23 | FFCP PHASE2:Hg19::chr20:45418126..45418131,-#_ff13f51a990286586a726a44f2e602ca | p@chr20:45418126..45418131, - |
2.62e-23 | FFCP PHASE2:Hg19::chr10:129704382..129704389,+#_ff13f51a990286586a726a44f2e602ca | p@chr10:129704382..129704389, + |
2.62e-23 | FFCP PHASE1:Hg19::chr8:116215335..116215378,+#_ff13f51a990286586a726a44f2e602ca | p@chr8:116215335..116215378, + |
2.62e-23 | FFCP PHASE1:Hg19::chr4:107955476..107955508,-#_ff13f51a990286586a726a44f2e602ca | p@chr4:107955476..107955508, - |
2.62e-23 | FFCP PHASE2:Hg19::chrX:135761770..135761786,-#_ff13f51a990286586a726a44f2e602ca | p@chrX:135761770..135761786, - |
2.62e-23 | FFCP PHASE1:Hg19::chr12:65516484..65516493,-#_ff13f51a990286586a726a44f2e602ca | p@chr12:65516484..65516493, - |
2.62e-23 | FFCP PHASE2:Hg19::chr8:98108427..98108430,-#_ff13f51a990286586a726a44f2e602ca | p@chr8:98108427..98108430, - |
2.62e-23 | FFCP PHASE1:Hg19::chr8:98065877..98065881,-#_ff13f51a990286586a726a44f2e602ca | p@chr8:98065877..98065881, - |
2.62e-23 | FFCP PHASE1:Hg19::chr1:188861179..188861222,-#_ff13f51a990286586a726a44f2e602ca | p@chr1:188861179..188861222, - |
2.62e-23 | FFCP PHASE1:Hg19::chr15:36739964..36739979,-#_ff13f51a990286586a726a44f2e602ca | p@chr15:36739964..36739979, - |
2.62e-23 | FFCP PHASE2:Hg19::chr7:79839919..79839924,+#_ff13f51a990286586a726a44f2e602ca | p@chr7:79839919..79839924, + |
2.62e-23 | FFCP PHASE2:Hg19::chr11:98528704..98528712,+#_ff13f51a990286586a726a44f2e602ca | p@chr11:98528704..98528712, + |
2.62e-23 | FFCP PHASE1:Hg19::chr2:51255348..51255351,+#_ff13f51a990286586a726a44f2e602ca | p@chr2:51255348..51255351, + |
2.62e-23 | FFCP PHASE1:Hg19::chr2:189756256..189756260,+#_ff13f51a990286586a726a44f2e602ca | p@chr2:189756256..189756260, + |
2.62e-23 | FFCP PHASE1:Hg19::chr15:89655929..89655934,+#_ff13f51a990286586a726a44f2e602ca | p@chr15:89655929..89655934, + |
2.62e-23 | FFCP PHASE2:Hg19::chr7:95775942..95775990,-#_ff13f51a990286586a726a44f2e602ca | p@chr7:95775942..95775990, - |
2.62e-23 | FFCP PHASE2:Hg19::chr5:6961030..6961034,+#_ff13f51a990286586a726a44f2e602ca | p@chr5:6961030..6961034, + |
2.62e-23 | FFCP PHASE1:Hg19::chr10:66459172..66459188,-#_ff13f51a990286586a726a44f2e602ca | p@chr10:66459172..66459188, - |
2.62e-23 | FFCP PHASE2:Hg19::chr2:222160756..222160761,+#_ff13f51a990286586a726a44f2e602ca | p@chr2:222160756..222160761, + |
2.62e-23 | FFCP PHASE2:Hg19::chr2:103235211..103235247,+#_ff13f51a990286586a726a44f2e602ca | p@chr2:103235211..103235247, + |
2.62e-23 | FFCP PHASE1:Hg19::chr6:17845348..17845358,-#_ff13f51a990286586a726a44f2e602ca | p@chr6:17845348..17845358, - |
2.62e-23 | FFCP PHASE1:Hg19::chr5:33619040..33619056,-#_ff13f51a990286586a726a44f2e602ca | p@chr5:33619040..33619056, - |
2.62e-23 | FFCP PHASE1:Hg19::chr2:97626550..97626562,-#_ff13f51a990286586a726a44f2e602ca | p@chr2:97626550..97626562, - |
2.62e-23 | FFCP PHASE1:Hg19::chr2:220594710..220594720,+#_ff13f51a990286586a726a44f2e602ca | p3@ENST00000442416 |
2.62e-23 | FFCP PHASE1:Hg19::chr14:58439259..58439262,-#_ff13f51a990286586a726a44f2e602ca | p@chr14:58439259..58439262, - |
2.62e-23 | FFCP PHASE2:Hg19::chr8:116215298..116215305,+#_ff13f51a990286586a726a44f2e602ca | p@chr8:116215298..116215305, + |
2.62e-23 | FFCP PHASE1:Hg19::chr13:76554315..76554319,+#_ff13f51a990286586a726a44f2e602ca | p@chr13:76554315..76554319, + |
2.62e-23 | FFCP PHASE1:Hg19::chr7:158242968..158242975,+#_ff13f51a990286586a726a44f2e602ca | p@chr7:158242968..158242975, + |
2.62e-23 | FFCP PHASE1:Hg19::chr4:81460545..81460547,-#_ff13f51a990286586a726a44f2e602ca | p@chr4:81460545..81460547, - |
2.62e-23 | FFCP PHASE1:Hg19::chr3:95401928..95401936,-#_ff13f51a990286586a726a44f2e602ca | p3@ENST00000494840, p3@uc003dro.1 |
2.62e-23 | FFCP PHASE1:Hg19::chr2:115929667..115929677,+#_ff13f51a990286586a726a44f2e602ca | p@chr2:115929667..115929677, + |
2.62e-23 | FFCP PHASE1:Hg19::chr17:59657604..59657621,-#_ff13f51a990286586a726a44f2e602ca | p@chr17:59657604..59657621, - |
2.62e-23 | FFCP PHASE2:Hg19::chr8:98051049..98051058,-#_ff13f51a990286586a726a44f2e602ca | p@chr8:98051049..98051058, - |
2.62e-23 | FFCP PHASE2:Hg19::chr6:129513919..129513922,+#_ff13f51a990286586a726a44f2e602ca | p@chr6:129513919..129513922, + |
2.62e-23 | FFCP PHASE1:Hg19::chr11:42142040..42142055,+#_ff13f51a990286586a726a44f2e602ca | p@chr11:42142040..42142055, + |
2.62e-23 | FFCP PHASE2:Hg19::chr1:188857554..188857562,-#_ff13f51a990286586a726a44f2e602ca | p@chr1:188857554..188857562, - |
2.62e-23 | FFCP PHASE2:Hg19::chr19:46531131..46531136,+#_ff13f51a990286586a726a44f2e602ca | p@chr19:46531131..46531136, + |
2.62e-23 | FFCP PHASE1:Hg19::chr8:97964849..97964868,-#_ff13f51a990286586a726a44f2e602ca | p@chr8:97964849..97964868, - |
2.62e-23 | FFCP PHASE1:Hg19::chr2:241625475..241625482,+#_ff13f51a990286586a726a44f2e602ca | p8@ENST00000407635 |
2.62e-23 | FFCP PHASE1:Hg19::chr14:36536932..36536937,-#_ff13f51a990286586a726a44f2e602ca | p@chr14:36536932..36536937, - |
2.62e-23 | FFCP PHASE2:Hg19::chr7:68735132..68735135,+#_ff13f51a990286586a726a44f2e602ca | p@chr7:68735132..68735135, + |
2.62e-23 | FFCP PHASE1:Hg19::chr10:129704473..129704478,+#_ff13f51a990286586a726a44f2e602ca | p@chr10:129704473..129704478, + |
2.62e-23 | FFCP PHASE1:Hg19::chr8:98075951..98075959,-#_ff13f51a990286586a726a44f2e602ca | p@chr8:98075951..98075959, - |
2.62e-23 | FFCP PHASE1:Hg19::chr8:129431377..129431384,-#_ff13f51a990286586a726a44f2e602ca | p@chr8:129431377..129431384, - |
2.62e-23 | FFCP PHASE1:Hg19::chr21:16662950..16662957,-#_ff13f51a990286586a726a44f2e602ca | p@chr21:16662950..16662957, - |
2.62e-23 | FFCP PHASE1:Hg19::chr17:79970753..79970763,+#_ff13f51a990286586a726a44f2e602ca | p15@ASPSCR1 |
2.62e-23 | FFCP PHASE1:Hg19::chr7:7749088..7749127,+#_ff13f51a990286586a726a44f2e602ca | p@chr7:7749088..7749127, + |