FFCP PHASE1:Hg19::chr13:110437462..110437470,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr13:110437462..110437470,- | |||
|description=CAGE_peak_at_chr13:110437462..110437470,- | |description=CAGE_peak_at_chr13:110437462..110437470,- | ||
|id=chr13:110437462..110437470,- | |id=chr13:110437462..110437470,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000775;1.14e-20;3!CL:0002615;1.32e-19;3!CL:0000097;4.91e-12;5!CL:0000136;6.39e-12;13!CL:0000081;1.01e-09;11!CL:0002567;3.11e-09;3!CL:0002623;3.11e-09;3!CL:0000094;4.74e-08;8!CL:0002591;1.53e-07;1!CL:0002616;1.53e-07;1!CL:0000163;6.90e-07;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000775,1.19e-20,3;CL:0002615,7.74e-20,3;CL:0000097,3.32e-12,5;CL:0002028,3.32e-12,5;CL:0000136,1.44e-10,15;CL:0000081,1.06e-09,11;CL:0002623,1.59e-09,3;CL:0002567,3.54e-09,3;CL:0000094,4.81e-08,8;CL:0002616,7.76e-08,1;CL:0002591,2.17e-07,1;CL:0000163,5.58e-07,9 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.14e-10!57;UBERON:0005068!3.14e-10!57;UBERON:0006241!3.14e-10!57;UBERON:0007135!3.14e-10!57;UBERON:0003080!3.50e-09!42;UBERON:0007023!4.56e-09!115;UBERON:0002616!1.19e-08!59;UBERON:0002780!1.59e-08!41;UBERON:0001890!1.59e-08!41;UBERON:0006240!1.59e-08!41;UBERON:0001017!3.45e-08!82;UBERON:0000955!4.68e-08!69;UBERON:0006238!4.68e-08!69;UBERON:0000073!6.49e-08!94;UBERON:0001016!6.49e-08!94;UBERON:0005743!1.23e-07!86 | |ontology_enrichment_uberon=UBERON:0001049!3.14e-10!57;UBERON:0005068!3.14e-10!57;UBERON:0006241!3.14e-10!57;UBERON:0007135!3.14e-10!57;UBERON:0003080!3.50e-09!42;UBERON:0007023!4.56e-09!115;UBERON:0002616!1.19e-08!59;UBERON:0002780!1.59e-08!41;UBERON:0001890!1.59e-08!41;UBERON:0006240!1.59e-08!41;UBERON:0001017!3.45e-08!82;UBERON:0000955!4.68e-08!69;UBERON:0006238!4.68e-08!69;UBERON:0000073!6.49e-08!94;UBERON:0001016!6.49e-08!94;UBERON:0005743!1.23e-07!86 | ||
|ontology_enrichment_uberon_v019=UBERON:0003688;4.52e-10;6!UBERON:0002358;4.52e-10;6!UBERON:0003684;4.52e-10;6!UBERON:0001178;4.52e-10;6!UBERON:0004457;7.33e-07;9!UBERON:0000042;7.33e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,3.48e-10,6;UBERON:0002358,3.48e-10,6;UBERON:0003684,3.48e-10,6;UBERON:0001178,3.48e-10,6 | |||
|phase1_expression=0.726713517082227,1.92690471501885,1.26858963686374,2.00146596706261,1.34088328328186,1.74467704820074,0,0,0,0,0.697801167972428,0,0.791300934685361,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0.572471974262113,0.136874425072884,0.627713197974014,0,0,0,0,0,0.154816123316076,0,0,0.739508020333575,0,0,0,0,0.802177789880567,0.868043482863407,0,0.647787332037959,0,0.581592955118259,0,0.242584061187816,0.232429036905685,0.411167888021826,0.309706370895104,0,0,0,1.03423704220986,0.645484683583826,0,0.376484679085209,0,0,0,0,0,0.329851300186716,0.199463657621632,0,0.290209238628584,0,0,0.502497330513487,0,0,0,0.368277635987565,0,0.211255286311942,0.212604299965044,0,0.786300418025466,0.600707571366025,0,0,0.39783335439818,0,0,0,0,0,0,0,0,0,0.569212969109448,1.17447437874188,0.382273228125229,0,0,0.263384084775077,0.196709770113833,1.17903228824749,0.411202997999018,0,0.651844533267181,0,0,0,0.294605907474837,0.443067789167242,0.541607727530031,0,0,0,0,0,0.296573126324121,0.535081656179426,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403213486449465,0.267440195783507,1.01377082717959,0,0,0.12786256184353,0.361439152384566,0,0,0,0,0,0,0.087834785693126,0.196468613246569,0,0,0,0,0.132957960518865,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0.134710672069688,0,0,0,0.234321431833797,0,0,0.298897361103602,0,0,0.280901613404497,0,0,0.206651562351531,0,0.741800787835671,0.910161361938026,0.718618141816238,0,0,0.277064115484183,0,0,0.150238058906597,0,0,0,0,0,0,0.257640540045629,0,0.168776332241266,0,0.252433774244115,0.184099797284599,0.161646056818812,0.355009592516614,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,0,0,0.109750285408626,0,0,0.0925884451585296,0,1.03993478527958,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0.264145302039678,1.24396869324463,3.45887888200707,1.38866676769018,0.063497894292169,1.14596527667483,1.17217447210047,0,0,0,0.857479297891735,0.112131084345361,0,0.07333828582095,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0,1.08524321078289,0,0,0,0,0,0,0,0,0,2.10833939483032,0.239624855491583,1.14861935834114,0,0,0.410952645100767,0,0,0.394061520403854,0.215627574859517,0.513372145118994,0.508189248444927,0,0,0,0,4.49404214368309,5.9832291840805,2.07207756718018,0.36807447515742,0,0,0,0,0.315404830067869,0,0,0,1.03473071292505,0,0.184369168541703,0.173767228936166,0.195801157462741,0,0.206768026122887,0.647142602455851,0.74709290462411,0.606255142892519,0,0.30239029332968,0,0.306923946576125,0.561320188866147,0.128139149255701,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0.552485933615378,0,0,0.131124414959424,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.206082023295445,0,0,0,0,0,0.096670718292122,0,0,0.137836572484531,0,0.145016693914229,0,0.0890320356467374,0.165284915360978,0.384380134730212,0,0.30347334256665,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0.179872457583315,0.54907405947211,0,0,0,0,0.975267478179181,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0.79312517629427,0,0,0.245040215981032,0,0,0.0711418433484141,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0.851692475380653,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0,0.284136146806413,0.23874448473769,0,0.307160702099232,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0.969332746095218,0.463840490809256,0,0,0,2.17499872630438,0,0,0,0,0,0,3.54296554325536,0.361789315876224,0,0.774054819518572,0.591095237907095,0.219385397153973,0.10893846351899,0.139423744278603,0.0769502585037971,0,0,0,0,0.31900115973192,0.0915975934018623,1.5991043280559,0,0,0.166211681900156,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0.611030144933625,0.296521128680622,0,0.104421949505455,0.202203398942031,0,0.468528891450678,0,0,0,0,0,0.30607276163049,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0.0967563312890851,0.292357268344742,0,0.678923115418936,0,0.225980740780532,0,0,0.443175571691151,0.195551382734803,0,0.213452994739353,0,0.288180834308212,0,0.857974989309823,0,0,0,0,0,0,0.288950589901519,0,0.410716136675979,0,0,0,0,0,0,0,0,0.223171457441873,0.201550417460179,0,0,0,0,0,0.393709926058995,0,0,0.544813624446302,0.160753148465019,0,0.415440338029185,0,0.77380195455795,0.121499113316049,0,0,0.209818352539992,0.105600336519406,0.896436696664224,0,0,0.662091970365432,0,0.542999601753713,0,0,0,0.082092520749339,0,0,0.439656701034247,0,0,0.13223260174269,0.171086837884329,0,0.320362237703084,0,0,0.496166021811951,0,0,0,0,0,0.306345576763462,0,0,0.886068179966986,0.610131324509816,0.500763722825999,0,0.554645257684261,0.310482014706917,0.276697269872462,0,0.454947352624943,1.14186133417987,0,0.468334905806882,0,0,0.233713309847224,0,0,0.251567901752575,0,0.228840068396924,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0.107410557042488,0,0.398095888698616,0.800055529326307,0,0,0,0,0,0,0.226705925512272,0,0.489473409012935,0,0,0.219284049578707,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0.107824811396682,0.786329709279482,0.327628914576042,0,0.425149840203366,0.991486114072017,0,0,0.23658523500376,0,0,0,0.128458450192919,0,0.159633859057151,0.41023272848151,0.504143392443436,0.207471757392654,0.484426936895553,0,0,0,0,0,0,0,0,0.526472298444801,0,0,0,0.163771917510097,0.147856086217045,0.202612753855184,0,0,0.0634158101939068,0,0,0,0.703484977438482,0,0.535701835878287,0.336283722218824,0.606965604236632,1.13831095675649,0.354809480650555,0.115233987555779,0,0.135939465953663,0.328863867814245,0,0,0.235479278551542,0,0,0,0.215927591218621,0,0.142953088353313,0,0,0,0,0.414432328326074,1.7071847709395,1.38251932362818,0,0.118332000730565,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0.329821550236287,0,0.308696632431779,0.437119121007915,0.470317296361523,0.245148321753905,0,0,0.594092800654172,0,0,0,0.128915775947154,0,0,0,0,0,0,0.286679166302903,0.157771562193185,0,0,0.5290268405154,0.371995018166751,0,0,0,0,0,0.101988829741982,0,0.18378979906969,0,0.227336094654718,0,0,0.20686599172379,0.213233981900981,0,0,0.124149428591716,0,0.0636471582781649,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0,0,0.402547587182052,0 | |phase1_expression=0.726713517082227,1.92690471501885,1.26858963686374,2.00146596706261,1.34088328328186,1.74467704820074,0,0,0,0,0.697801167972428,0,0.791300934685361,0,0,0,0,0,0,0.123121058076788,0,0.313454721478088,0.572471974262113,0.136874425072884,0.627713197974014,0,0,0,0,0,0.154816123316076,0,0,0.739508020333575,0,0,0,0,0.802177789880567,0.868043482863407,0,0.647787332037959,0,0.581592955118259,0,0.242584061187816,0.232429036905685,0.411167888021826,0.309706370895104,0,0,0,1.03423704220986,0.645484683583826,0,0.376484679085209,0,0,0,0,0,0.329851300186716,0.199463657621632,0,0.290209238628584,0,0,0.502497330513487,0,0,0,0.368277635987565,0,0.211255286311942,0.212604299965044,0,0.786300418025466,0.600707571366025,0,0,0.39783335439818,0,0,0,0,0,0,0,0,0,0.569212969109448,1.17447437874188,0.382273228125229,0,0,0.263384084775077,0.196709770113833,1.17903228824749,0.411202997999018,0,0.651844533267181,0,0,0,0.294605907474837,0.443067789167242,0.541607727530031,0,0,0,0,0,0.296573126324121,0.535081656179426,0,0,0,0,0,0,0,0,0,0,0,0,0,0.403213486449465,0.267440195783507,1.01377082717959,0,0,0.12786256184353,0.361439152384566,0,0,0,0,0,0,0.087834785693126,0.196468613246569,0,0,0,0,0.132957960518865,0,0,0,0.198762407366705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0,0,0,0,0,0,0,0,0,0,0,0.354668382198357,0,0,0,0,0.134710672069688,0,0,0,0.234321431833797,0,0,0.298897361103602,0,0,0.280901613404497,0,0,0.206651562351531,0,0.741800787835671,0.910161361938026,0.718618141816238,0,0,0.277064115484183,0,0,0.150238058906597,0,0,0,0,0,0,0.257640540045629,0,0.168776332241266,0,0.252433774244115,0.184099797284599,0.161646056818812,0.355009592516614,0,0,0,0,0,0.121973706129595,0.132529768321485,0.116193942869518,0.207322110030741,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18157981336281,0,0,0,0.109750285408626,0,0,0.0925884451585296,0,1.03993478527958,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0,0,0,0,0.264145302039678,1.24396869324463,3.45887888200707,1.38866676769018,0.063497894292169,1.14596527667483,1.17217447210047,0,0,0,0.857479297891735,0.112131084345361,0,0.07333828582095,0.258543431515556,0,0,0.26593811658487,0,0,0,0,0,1.08524321078289,0,0,0,0,0,0,0,0,0,2.10833939483032,0.239624855491583,1.14861935834114,0,0,0.410952645100767,0,0,0.394061520403854,0.215627574859517,0.513372145118994,0.508189248444927,0,0,0,0,4.49404214368309,5.9832291840805,2.07207756718018,0.36807447515742,0,0,0,0,0.315404830067869,0,0,0,1.03473071292505,0,0.184369168541703,0.173767228936166,0.195801157462741,0,0.206768026122887,0.647142602455851,0.74709290462411,0.606255142892519,0,0.30239029332968,0,0.306923946576125,0.561320188866147,0.128139149255701,0,0,0,0,0,0,0,0,0.120859449591622,0.200506470303285,0.552485933615378,0,0,0.131124414959424,0.451199612907412,0.0770153371044148,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.206082023295445,0,0,0,0,0,0.096670718292122,0,0,0.137836572484531,0,0.145016693914229,0,0.0890320356467374,0.165284915360978,0.384380134730212,0,0.30347334256665,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0,0,0,0.78494864019923,0.179872457583315,0.54907405947211,0,0,0,0,0.975267478179181,0,0,0,0,1.13008116620243,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.282431402330337,0,0,0,0,0.507447609232169,0,0,0,0,0,0,0.79312517629427,0,0,0.245040215981032,0,0,0.0711418433484141,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0.851692475380653,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0,0.284136146806413,0.23874448473769,0,0.307160702099232,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.197286811273867,0,0,0.969332746095218,0.463840490809256,0,0,0,2.17499872630438,0,0,0,0,0,0,3.54296554325536,0.361789315876224,0,0.774054819518572,0.591095237907095,0.219385397153973,0.10893846351899,0.139423744278603,0.0769502585037971,0,0,0,0,0.31900115973192,0.0915975934018623,1.5991043280559,0,0,0.166211681900156,0,0,0,0,0,0,0.326465616318295,0,0,0,0,0.611030144933625,0.296521128680622,0,0.104421949505455,0.202203398942031,0,0.468528891450678,0,0,0,0,0,0.30607276163049,0.379119477770928,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0.0967563312890851,0.292357268344742,0,0.678923115418936,0,0.225980740780532,0,0,0.443175571691151,0.195551382734803,0,0.213452994739353,0,0.288180834308212,0,0.857974989309823,0,0,0,0,0,0,0.288950589901519,0,0.410716136675979,0,0,0,0,0,0,0,0,0.223171457441873,0.201550417460179,0,0,0,0,0,0.393709926058995,0,0,0.544813624446302,0.160753148465019,0,0.415440338029185,0,0.77380195455795,0.121499113316049,0,0,0.209818352539992,0.105600336519406,0.896436696664224,0,0,0.662091970365432,0,0.542999601753713,0,0,0,0.082092520749339,0,0,0.439656701034247,0,0,0.13223260174269,0.171086837884329,0,0.320362237703084,0,0,0.496166021811951,0,0,0,0,0,0.306345576763462,0,0,0.886068179966986,0.610131324509816,0.500763722825999,0,0.554645257684261,0.310482014706917,0.276697269872462,0,0.454947352624943,1.14186133417987,0,0.468334905806882,0,0,0.233713309847224,0,0,0.251567901752575,0,0.228840068396924,0,0,0,0,0,0,0,0,0.521745061811734,0,0,0,0,0.107410557042488,0,0.398095888698616,0.800055529326307,0,0,0,0,0,0,0.226705925512272,0,0.489473409012935,0,0,0.219284049578707,0,0,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0.107824811396682,0.786329709279482,0.327628914576042,0,0.425149840203366,0.991486114072017,0,0,0.23658523500376,0,0,0,0.128458450192919,0,0.159633859057151,0.41023272848151,0.504143392443436,0.207471757392654,0.484426936895553,0,0,0,0,0,0,0,0,0.526472298444801,0,0,0,0.163771917510097,0.147856086217045,0.202612753855184,0,0,0.0634158101939068,0,0,0,0.703484977438482,0,0.535701835878287,0.336283722218824,0.606965604236632,1.13831095675649,0.354809480650555,0.115233987555779,0,0.135939465953663,0.328863867814245,0,0,0.235479278551542,0,0,0,0.215927591218621,0,0.142953088353313,0,0,0,0,0.414432328326074,1.7071847709395,1.38251932362818,0,0.118332000730565,0,0,0,0.31020638566432,0,0,0,0,0,0,0,0,0,0.198950775161368,0,0,0.329821550236287,0,0.308696632431779,0.437119121007915,0.470317296361523,0.245148321753905,0,0,0.594092800654172,0,0,0,0.128915775947154,0,0,0,0,0,0,0.286679166302903,0.157771562193185,0,0,0.5290268405154,0.371995018166751,0,0,0,0,0,0.101988829741982,0,0.18378979906969,0,0.227336094654718,0,0,0.20686599172379,0.213233981900981,0,0,0.124149428591716,0,0.0636471582781649,0,0,0,0,0.143444410785353,0,0,0,0,0,0,0.122241444182866,0,0,0.402547587182052,0 | ||
|short_description=p@chr13:110437462..110437470,- | |short_description=p@chr13:110437462..110437470,- | ||
}} | }} |
Latest revision as of 14:27, 24 July 2015
Short description: | p@chr13:110437462..110437470, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr13:110437462..110437470, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neutrophil | 1.19e-20 | 3 |
adipocyte of omentum tissue | 7.74e-20 | 3 |
mast cell | 3.32e-12 | 5 |
basophil mast progenitor cell | 3.32e-12 | 5 |
fat cell | 1.44e-10 | 15 |
blood cell | 1.06e-09 | 11 |
acinar cell of salivary gland | 1.59e-09 | 3 |
light melanocyte | 3.54e-09 | 3 |
granulocyte | 4.81e-08 | 8 |
perirenal adipocyte cell | 7.76e-08 | 1 |
smooth muscle cell of the pulmonary artery | 2.17e-07 | 1 |
endocrine cell | 5.58e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
omentum | 3.48e-10 | 6 |
peritoneum | 3.48e-10 | 6 |
abdominal cavity | 3.48e-10 | 6 |
visceral peritoneum | 3.48e-10 | 6 |