FFCP PHASE1:Hg19::chr7:107643964..107643973,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr7:107643964..107643973,- to FFCP PHASE1:Hg19::chr7:107643964..107643973,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3912 | |EntrezGene=3912 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6486 | |HGNC=6486 | ||
|TSSclassifier=strong | |||
|UniProt=P07942,Q8TAS6 | |UniProt=P07942,Q8TAS6 | ||
|association_with_transcript=-160bp_to_NM_002291,uc003vew.2,uc003vex.2,uc010ljn.1_5end | |||
|cluster_id=chr7:107643964..107643973,- | |||
|coexpression_cluster_id=C159 | |||
|description=CAGE_peak_10_at_LAMB1_5end | |||
|id=chr7:107643964..107643973,- | |||
|ontology_enrichment_celltype=CL:0000222!2.51e-12!119;CL:0000220!8.65e-12!246;CL:0002321!2.18e-11!248;CL:0002139!3.08e-10!24;CL:0000066!1.14e-08!254;CL:0000055!2.24e-08!180;CL:0002078!7.94e-08!44;CL:0000115!2.79e-07!35;CL:0000071!7.01e-07!18;CL:0002546!7.01e-07!18;CL:1000449!9.29e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002549;8.38e-10;2!CL:1000449;9.30e-10;15!CL:0002536;2.00e-09;2!CL:1000497;1.55e-08;17!CL:0002518;1.55e-08;17!CL:0002188;1.94e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:1000449,9.13e-10,15;CL:0002536,1.01e-09,2;CL:0002549,1.62e-09,2;CL:1000497,1.52e-08,17;CL:0002518,1.52e-08,17;CL:0002188,1.74e-08,5 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000119!1.57e-15!312;UBERON:0000467!5.23e-15!625;UBERON:0000480!7.76e-15!626;UBERON:0003914!7.92e-15!118;UBERON:0000483!1.14e-14!309;UBERON:0000468!1.85e-14!659;UBERON:0000481!1.80e-13!347;UBERON:0000477!5.53e-13!286;UBERON:0004111!1.03e-11!241;UBERON:0002049!2.53e-11!79;UBERON:0007798!2.53e-11!79;UBERON:0004872!2.72e-11!84;UBERON:0000475!1.25e-10!365;UBERON:0000055!4.34e-10!69;UBERON:0000490!4.54e-10!138;UBERON:0004535!1.19e-09!110;UBERON:0001009!2.35e-09!113;UBERON:0002050!2.90e-09!605;UBERON:0005423!2.90e-09!605;UBERON:0000922!3.21e-09!612;UBERON:0000025!3.39e-09!194;UBERON:0000923!4.97e-09!604;UBERON:0005291!4.97e-09!604;UBERON:0006598!4.97e-09!604;UBERON:0002532!4.97e-09!604;UBERON:0003104!5.99e-09!238;UBERON:0009142!5.99e-09!238;UBERON:0001981!1.25e-08!60;UBERON:0007500!1.25e-08!60;UBERON:0004537!1.25e-08!60;UBERON:0006965!1.25e-08!60;UBERON:0005256!1.30e-08!143;UBERON:0002100!8.14e-08!216;UBERON:0003886!8.74e-08!63;UBERON:0006554!4.51e-07!44;UBERON:0001637!5.52e-07!42;UBERON:0003509!5.52e-07!42;UBERON:0004572!5.52e-07!42;UBERON:0001986!7.01e-07!18;UBERON:0004638!7.01e-07!18;UBERON:0004852!7.01e-07!18;UBERON:0006555!8.62e-07!17;UBERON:0005103!8.62e-07!17;UBERON:0000083!8.62e-07!17;UBERON:0009201!8.62e-07!17;UBERON:0004819!8.62e-07!17;UBERON:0006553!8.62e-07!17;UBERON:0003074!8.62e-07!17;UBERON:0003060!8.62e-07!17;UBERON:0002553!9.06e-07!70;UBERON:0004211!9.29e-07!16;UBERON:0001285!9.29e-07!16;UBERON:0007684!9.29e-07!16;UBERON:0003220!9.29e-07!16;UBERON:0004208!9.29e-07!16 | |||
|ontology_enrichment_uberon_v019=UBERON:0005629;8.38e-10;2!UBERON:0005358;8.38e-10;2!UBERON:0001886;8.38e-10;2!UBERON:0004086;8.38e-10;2!UBERON:0005282;8.38e-10;2!UBERON:0005281;8.38e-10;2!UBERON:0006555;9.30e-10;15!UBERON:0004819;9.30e-10;15!UBERON:0001285;9.30e-10;15!UBERON:0007684;9.30e-10;15!UBERON:0002113;7.80e-08;24!UBERON:0011143;7.80e-08;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,9.13e-10,15;UBERON:0009773,9.13e-10,15;UBERON:0001231,9.13e-10,15;UBERON:0001285,9.13e-10,15;UBERON:0007684,9.13e-10,15;UBERON:0004208,9.13e-10,15;UBERON:0005629,1.62e-09,2;UBERON:0005358,1.62e-09,2;UBERON:0001886,1.62e-09,2;UBERON:0004086,1.62e-09,2;UBERON:0005282,1.62e-09,2;UBERON:0005281,1.62e-09,2;UBERON:0006555,4.07e-09,16;UBERON:0004819,4.07e-09,16;UBERON:0002113,3.15e-07,26;UBERON:0003918,3.15e-07,26;UBERON:0011143,3.15e-07,26;UBERON:0005095,3.15e-07,26;UBERON:0007687,3.15e-07,26 | |||
|phase1_expression=0.181678379270557,0,0.422863212287913,0,0.446961094427288,0,0,0.631719873426831,0,0,0,1.52908960491121,1.31883489114227,0,0,0.672325146451775,0,0,0.487932798790507,0.123121058076788,1.02000345622126,0.313454721478088,0,0.273748850145768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.255725123687061,0,0.50133791063589,0.144846518960824,0,0,0.567208902984407,0,0.087834785693126,0,0,0.370784442784429,0,0.174129737299267,0,0,0,0,0.198762407366705,0,1.04142150482278,0,0.419499436209906,0.550236083880135,0.626984899610432,0.516833518338658,0.71153252537342,3.3472061276467,0,0.760272105718513,0.976248230192678,0.367663080345869,2.43042584364528,0.535798369704479,0.898117490504679,0.675668882899933,1.53316637465883,1.89853131913626,0.732806975721629,0,0,0.436094052142534,0,0.506522046658319,0.926864265692532,2.0078563452417,0.354668382198357,0.560677600142307,1.06748995729705,0.49333509683432,0,0.538842688278752,0.653847612453835,1.05950199351452,2.30470369792,0.234321431833797,0.312160076830321,0,0.448346041655403,0.469737994575059,0.161872944368132,0.140450806702248,0,0.491337269247072,0.103325781175765,1.18800285728205,0.247266929278557,0,0,0.168336113954066,0,0,0.438977620880838,0,0.150238058906597,0.453728732640084,0.358779271377724,1.06778694409284,0.211931901159562,2.40072876867522,0.206105058476878,0.257640540045629,0.37223371266318,0.506328996723799,0.194874010322397,0.252433774244115,0.368199594569197,0,2.4850671476163,0.201504196455281,0.339121184620975,0.193260853163297,0.272746120590835,0,0,0,0,0.207322110030741,0.252320850875628,0,0,0,1.38134921352481,0.928735856063958,0,0.236613600079688,0.168584690078102,0.723033089650446,0,0.871517776369625,0.474541238222193,0.269662616320329,0,0,0,0,0.4115740113314,0,0,0,0,0,0.860919069801795,0.857839051492628,0.219500570817251,0,0.100528972411631,0.555530670951178,0,0,0,0.115930404975077,0.587043471179108,0.577465791044295,0.925971025153221,0.951270761172991,0,0,0,0,0,0,0.335964256397719,0.141775097242386,0.358234090811393,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0.336393253036082,0.87192013766656,0.36669142910475,0.129271715757778,0,0,0.26593811658487,0,0,0,0.266422179016099,0.714889968290738,1.08524321078289,0,0.65147236858747,0.355391948742546,0,0.904318131178758,0,0.599837947092342,0,0,0,0.239624855491583,0,1.42636905040718,0,0,0.537182889719687,0,0,0,0,0,0,1.54657762555539,0,0,0,0,0,0.24538298343828,0.500170521059677,0,0.207970861530807,0,0,0,0,0,0,0,0.184369168541703,0.260650843404249,0,0,0,0,0,0,0,1.81434175997808,0.248107807818777,0,0,0,0,0.160853921143607,0,0,0.177561725313127,0.410635780069046,0,0.116210378459959,1.45031339509947,0.40101294060657,0.0920809889358963,0.229628896329213,0.182091168006717,0.262248829918848,0.451199612907412,1.00119938235739,0.784349769176855,1.46139224653261,1.26661954671451,1.13733384070897,0.340187410553031,1.51141141271498,3.08454505380579,0.812839312631559,0,0.764628819135115,0.831076008928724,0.895499018888713,0,0,0,0.328014645699706,0.325378394664303,0,0,0,0.574265537996172,0,0,0.386682873168488,0.462145851343933,0.307007349452259,0,1.18162269355101,0.290033387828457,0.255679882248303,0.356128142586949,0.495854746082934,0.192190067365106,0.382838137483752,0.10115778085555,0,0.31481234683064,0.6970372701606,0,1.06461206063404,0.869932992075073,0.18532421910392,0,0,0.316379424718726,0.38126038784765,0,0,0.318203247925937,0,0.539617372749944,1.09814811894422,0.117812402345686,0.606547444719948,0,0.842516912477962,0,0.243713489631284,0,0.136499911407986,0.141405431953713,1.13008116620243,0,0.66343897524122,0.876901770507525,0,0,0.202910376962704,0,0.563391205064483,0.286822704408103,0.491245205065606,0.7133421029625,0,0,0,0,0,0.0962221127255121,0,0,0,0.43050537267123,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0.445234820091624,0,0,0.19924798825107,0,0,0.20453736500431,0,0,0.808815160325942,0,0,0.197286811273867,0,0,0,0.0927680981618513,0,0,0,0,0.341380344856499,0,0.236387681767936,0,0,0.347249989866585,0,0.120596438625408,0,0.110579259931225,0.295547618953547,0.219385397153973,0.21787692703798,0.139423744278603,0.153900517007594,0.113942055847001,15.447781594,3.32103284316157,12.7117425148749,0,0.274792780205587,0.533034776018635,0,0,0,0,0,0,0,0,0.421996129056054,0,0.989471500037586,0,0,0.176915129006678,0.611030144933625,0,0,0,0,0.802577647298789,0,0,0.19566461893209,0,0,1.20990716048664,0.30607276163049,0.252746318513952,0.150323419414493,0.103688191397247,2.65861549082874,0,0.313932918407225,1.19472429772959,0.853828638089378,0,0.694238953340524,0,0.609414446062818,0.17472666824203,0,0,0.219267951258557,0.328461828212837,0.193978032976839,0,0.225980740780532,0,0.397429223405979,0.0633107959558787,0.58665414820440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| ||
|short_description=p10@LAMB1 | |||
}} | }} |
Latest revision as of 02:20, 25 September 2015
Short description: | p10@LAMB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_10_at_LAMB1_5end |
Coexpression cluster: | C159_choriocarcinoma_pancreatic_placenta_chorionic_testicular_bronchioalveolar_seminal |
Association with transcript: | -160bp_to_NM_002291, uc003vew.2, uc003vex.2, uc010ljn.1_5end |
EntrezGene: | LAMB1 |
HGNC: | 6486 |
UniProt: | P07942Q8TAS6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 9.13e-10 | 15 |
amniotic epithelial cell | 1.01e-09 | 2 |
fibroblast of choroid plexus | 1.62e-09 | 2 |
kidney cell | 1.52e-08 | 17 |
kidney epithelial cell | 1.52e-08 | 17 |
glomerular endothelial cell | 1.74e-08 | 5 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 9.13e-10 | 15 |
renal tubule | 9.13e-10 | 15 |
nephron tubule | 9.13e-10 | 15 |
nephron | 9.13e-10 | 15 |
uriniferous tubule | 9.13e-10 | 15 |
nephrogenic mesenchyme | 9.13e-10 | 15 |
vascular plexus | 1.62e-09 | 2 |
ventricle of nervous system | 1.62e-09 | 2 |
choroid plexus | 1.62e-09 | 2 |
brain ventricle | 1.62e-09 | 2 |
ventricular system of brain | 1.62e-09 | 2 |
ventricular system of central nervous system | 1.62e-09 | 2 |
excretory tube | 4.07e-09 | 16 |
kidney epithelium | 4.07e-09 | 16 |
kidney | 3.15e-07 | 26 |
kidney mesenchyme | 3.15e-07 | 26 |
upper urinary tract | 3.15e-07 | 26 |
kidney rudiment | 3.15e-07 | 26 |
kidney field | 3.15e-07 | 26 |