FFCP PHASE1:Mm9::chr13:56353536..56353542,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18014 | |EntrezGene=18014 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=100 | |MCL_coexpression_id=100 | ||
|TSSclassifier=NA | |||
|UniProt=P70660 | |UniProt=P70660 | ||
|association_with_transcript=-12bp_to_ENSMUST00000058475,NM_010896,uc007qsl.1_5end | |association_with_transcript=-12bp_to_ENSMUST00000058475,NM_010896,uc007qsl.1_5end | ||
|cluster_id=chr13:56353536..56353542,- | |||
|description=CAGE_peak_1_at_Neurog1_5end | |description=CAGE_peak_1_at_Neurog1_5end | ||
|id=chr13:56353536..56353542,- | |id=chr13:56353536..56353542,- | ||
|ontology_enrichment_celltype=CL:0002609!1.96e-08!6;CL:0000117!1.87e-07!23;CL:0000337!1.87e-07!23 | |ontology_enrichment_celltype=CL:0002609!1.96e-08!6;CL:0000117!1.87e-07!23;CL:0000337!1.87e-07!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.86e-14,23;CL:0000337,1.86e-14,23;CL:0002609,5.63e-13,6;CL:0000120,2.69e-10,3;CL:0002613,7.58e-10,3;CL:0000540,2.13e-09,33;CL:0000047,2.13e-09,33;CL:0000031,2.13e-09,33;CL:0000404,2.13e-09,33;CL:0002319,5.48e-08,43;CL:0000221,9.44e-08,44;CL:0000133,9.44e-08,44;CL:0000393,1.29e-07,39;CL:0000211,1.29e-07,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!8.38e-10!49;UBERON:0007811!2.83e-08!86;UBERON:0000033!2.41e-07!63;UBERON:0000153!9.49e-07!94 | |ontology_enrichment_uberon=UBERON:0003056!8.38e-10!49;UBERON:0007811!2.83e-08!86;UBERON:0000033!2.41e-07!63;UBERON:0000153!9.49e-07!94 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,1.25e-10,49;UBERON:0000970,8.28e-08,9;UBERON:0000019,8.28e-08,9;UBERON:0000047,8.28e-08,9;UBERON:0010312,8.28e-08,9;UBERON:0004088,8.28e-08,9;UBERON:0002104,8.28e-08,9;UBERON:0001456,8.28e-08,9;UBERON:0003072,8.28e-08,9;UBERON:0004128,8.28e-08,9;UBERON:0003071,8.28e-08,9;UBERON:0004121,1.94e-07,95;UBERON:0000924,1.94e-07,95;UBERON:0006601,1.94e-07,95;UBERON:0002346,2.09e-07,64;UBERON:0003075,2.09e-07,64;UBERON:0007284,2.09e-07,64 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0.198581902401771,0.522399578277871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0,1.43752564364972,0,0,0,0,0,0,28.1219880594841,23.8045940672415,24.0855933332348,0,0,0,0,0,0,0,34.2175720617976,25.9211401596846,30.7074443573018,0,0,3.06226998037385,2.49198224647415,0.919218786610021,0,0,0,8.70449499019279,4.29991924931325,4.68822033501084,0,0,0,0,0,0.745597783301202,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0,0,0.125654352112864,0.173824320192276,0,0,0,0,0,0,0,0.650602214813519,0.919608417733892,1.62055916824814,3.16480117455002,1.2246569847239,5.89323113310309,3.93547243150861,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,0.210289948564127,0.205809224758569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720244376125241,2.45781499187234,2.57204442037911,0.177340233642274,0.535106452806212,0,0,0.469343416127421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69107881605257,0,0,0,0,0,0,0,0,0,0.864090018773596,0,0,0.102710957164827,0.389762468933385,0.179026695667481,0.39736270956253,0.480781798079875,0,0,0.0762068066549998,0.302478555410522,0.0974578807397524,0.0962118416403295,0.116876902181569,0,0.221985953374065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453142408984205,0,41.5149390336707,24.3405172774629,7.34154504742777,2.18796045361465,3.14419743941973,1.10306105070008,0.666740183404846,0.412070114477788,0,0.505394423527595,0.760437899670719,0.565879024158229,0.842773567228942,0.832326981263301,0.229741875822453,0,0.579421629724277,0,0.824171801606613,0.441596760403192,1.37147700954166,0.532427418478012,0.476872379894642,1.45346416632329,1.12931256498397,0.338458431566706,0.548783918618318,0.263069711437843,0.679020569229309,0,0.830445126869219,0.788035859004508,1.22769312950907,0.619747364743864,0.192906610981141,1.74867404556562,0.701794825336225,0.644613162144895,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.425216450755349,0.198581902401771,0.522399578277871,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0,0,0,1.43752564364972,0,0,0,0,0,0,28.1219880594841,23.8045940672415,24.0855933332348,0,0,0,0,0,0,0,34.2175720617976,25.9211401596846,30.7074443573018,0,0,3.06226998037385,2.49198224647415,0.919218786610021,0,0,0,8.70449499019279,4.29991924931325,4.68822033501084,0,0,0,0,0,0.745597783301202,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.292780797011547,0,0,0,0,0,0,0,0.125654352112864,0.173824320192276,0,0,0,0,0,0,0,0.650602214813519,0.919608417733892,1.62055916824814,3.16480117455002,1.2246569847239,5.89323113310309,3.93547243150861,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,0.210289948564127,0.205809224758569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.720244376125241,2.45781499187234,2.57204442037911,0.177340233642274,0.535106452806212,0,0,0.469343416127421,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.69107881605257,0,0,0,0,0,0,0,0,0,0.864090018773596,0,0,0.102710957164827,0.389762468933385,0.179026695667481,0.39736270956253,0.480781798079875,0,0,0.0762068066549998,0.302478555410522,0.0974578807397524,0.0962118416403295,0.116876902181569,0,0.221985953374065,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.453142408984205,0,41.5149390336707,24.3405172774629,7.34154504742777,2.18796045361465,3.14419743941973,1.10306105070008,0.666740183404846,0.412070114477788,0,0.505394423527595,0.760437899670719,0.565879024158229,0.842773567228942,0.832326981263301,0.229741875822453,0,0.579421629724277,0,0.824171801606613,0.441596760403192,1.37147700954166,0.532427418478012,0.476872379894642,1.45346416632329,1.12931256498397,0.338458431566706,0.548783918618318,0.263069711437843,0.679020569229309,0,0.830445126869219,0.788035859004508,1.22769312950907,0.619747364743864,0.192906610981141,1.74867404556562,0.701794825336225,0.644613162144895,0,0,0 | ||
|short_description=p1@Neurog1 | |short_description=p1@Neurog1 | ||
}} | }} |
Latest revision as of 19:12, 1 October 2015
Short description: | p1@Neurog1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Neurog1_5end |
Coexpression cluster: | MCL_coexpression_mm9:100 |
Association with transcript: | -12bp_to_ENSMUST00000058475, NM_010896, uc007qsl.1_5end |
EntrezGene: | Neurog1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.86e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.86e-14 | 23 |
neuron of cerebral cortex | 5.63e-13 | 6 |
granule cell | 2.69e-10 | 3 |
striatum neuron | 7.58e-10 | 3 |
neuron | 2.13e-09 | 33 |
neuronal stem cell | 2.13e-09 | 33 |
neuroblast | 2.13e-09 | 33 |
electrically signaling cell | 2.13e-09 | 33 |
neural cell | 5.48e-08 | 43 |
ectodermal cell | 9.44e-08 | 44 |
neurectodermal cell | 9.44e-08 | 44 |
electrically responsive cell | 1.29e-07 | 39 |
electrically active cell | 1.29e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 1.25e-10 | 49 |
eye | 8.28e-08 | 9 |
camera-type eye | 8.28e-08 | 9 |
simple eye | 8.28e-08 | 9 |
immature eye | 8.28e-08 | 9 |
ocular region | 8.28e-08 | 9 |
visual system | 8.28e-08 | 9 |
face | 8.28e-08 | 9 |
optic cup | 8.28e-08 | 9 |
optic vesicle | 8.28e-08 | 9 |
eye primordium | 8.28e-08 | 9 |
ectoderm-derived structure | 1.94e-07 | 95 |
ectoderm | 1.94e-07 | 95 |
presumptive ectoderm | 1.94e-07 | 95 |
neurectoderm | 2.09e-07 | 64 |
neural plate | 2.09e-07 | 64 |
presumptive neural plate | 2.09e-07 | 64 |