FFCP PHASE1:Mm9::chr17:74858476..74858510,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=268973|HGNC=|MCL_coexpression_id=12|UniProt=Q3UP24|association_with_transcript=-28bp_to_ENSMUST00000052124,NM_001033367,uc008doc.1_5end|description=CAGE_peak_2_at_Nlrc4_5end|id=chr17:74858476..74858510,-|ontology_enrichment_celltype=CL:0002563!6.10e-08!9;CL:0002251!6.10e-08!9|ontology_enrichment_celltype_v019_2=CL:0002563,2.36e-13,9;CL:0002251,2.36e-13,9;CL:0000239,7.56e-10,6;CL:0000677,7.56e-10,6;CL:0000584,7.56e-10,6;CL:0000075,2.83e-08,7;CL:0002076,4.07e-07,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0005409!4.89e-17!59;UBERON:0000160!2.00e-13!43;UBERON:0000344!1.08e-12!15;UBERON:0001242!4.73e-11!13;UBERON:0000060!4.73e-11!13;UBERON:0001262!4.73e-11!13;UBERON:0004786!4.73e-11!13;UBERON:0004923!9.27e-10!24;UBERON:0003350!6.10e-08!9;UBERON:0004808!6.10e-08!9;UBERON:0001277!6.10e-08!9|ontology_enrichment_uberon_v019_2=UBERON:0005409,3.79e-39,47;UBERON:0000160,3.64e-37,31;UBERON:0000344,3.90e-22,15;UBERON:0001242,4.25e-19,13;UBERON:0001262,4.25e-19,13;UBERON:0004786,4.25e-19,13;UBERON:0004923,1.41e-13,24;UBERON:0003350,2.36e-13,9;UBERON:0004808,2.36e-13,9;UBERON:0001277,2.36e-13,9;UBERON:0001007,4.34e-11,116;UBERON:0001555,4.34e-11,116;UBERON:0007026,4.34e-11,116;UBERON:0004119,1.03e-10,118;UBERON:0000925,1.03e-10,118;UBERON:0006595,1.03e-10,118;UBERON:0000485,1.66e-10,11;UBERON:0004921,1.30e-09,114;UBERON:0002108,5.26e-07,4|phase1_expression=0.160148847104794,21.6364752736404,18.654968814971,25.7094579610806,19.5349334679075,11.2479112180966,10.0453435456076,0.387369970324729,0.140788722151667,0,0,0,0.171200729931206,0.524522414513984,0,0.809901069559304,0.699561878128147,2.68142840554502,3.01651753932625,2.12194825899015,0.17008658030214,0,0,22.8789164594572,16.7468775179034,14.9300310669905,14.2151458732495,17.453169847557,29.453630015738,15.8778981748756,11.3082560434205,0,0,0,12.9983228888074,7.31432439577366,11.637653306955,0.418531630736908,0,1.57057123192139,0.588231488031014,0,0,0,0,0,0,0,0,0,0,0,1.67782606057736,0,1.00828139742739,0,0,0.515672092277442,0,0,0,0,0,0.899899717281399,0,0,0.299600110518405,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0,0,0,0,0,0,0,0,0,0,1.40444420131752,0,0,0,0,0,0,0,0,0,0,3.53970027129086,3.88406825470758,0,0,0,0,0.150722640552623,0.117588707135705,0,1.23597483867187,0.433798070759735,1.76922110389975,0,0,0,13.0474232852686,0,0,18.3929079750186,2.03685711660064,1.19980546198682,1.27070227073065,0,0,0,0,0,0,0,0,0.124406970610093,0,0.210441855886474,0,0,0,0,0,0,0.0937017245597288,0.258703370739016,0,0,0,0,0,0,0.205782136407943,0,2.1066395619397,1.02939162845886,0.284163499395593,0,0,0,0,0,0,0.232533944750408,0,0,0,0,0.0810688095458557,0.146199987425332,0,0.536825675041487,0,0,39.6502539580558,14.2803305998314,0,0.928946687441754,4.12375876230699,6.25218926332362,7.11609740303585,13.1255682017666,11.3886974770683,16.1404975629531,15.3314477368164,13.3300836267571,11.1129529657898,12.5834717211591,13.400559092231,16.1304431336037,0.189667900953082,0.228497025219458,0,0.203651327845314,0.193952487167626,0.0701358198903186,0,0.147610147979602,0,0.123397163921801,0.296452627087149,0,0,0,0,0.241177159752417,0,0,0.810676133875177,0,0,0,0,0.252578877947112,0.179397413521912,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0.163863314715738,0.172684981865896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0.989820737835213,0,0,0,0,0,0,4.65170927702798,0,0.356497378384721,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0.23467170806371,0,0,0.32977250588296,0.161464426695906,0,0.238744688006273,0,14.2825609948627,0,0.854354403989263,0,0,0,0.956859594047176,0.228778173206523,0.679913719975421,1.11961161858926,0.552799895217695,14.3200592702267,0,1.42323626988794,3.02414954301044,3.76358932826044,4.58561383866973,5.93403124093211,5.2898211664215,8.11443420150492,12.8318823558875,0,0,0,0,0,0,0,0,0,0,0.241584120826006,0,0,0,0.308132871494482,0,0,0,0.120195449519969,0,0,0.304827226619999,0.100826185136841,0.194915761479505,0.0962118416403295,0.350630706544707,0,0,0,0,0.19318959403219,0,0.73260649706906,0.214368379079066,0.501572104035363,0,0,0,0,0,0,0,0.45032120322422,0,0,0,0,0,0.243106717068294,0.209613162627982,0.367687016900028,1.55572709461131,0.618105171716683,0,0.252697211763798,0.50695859978048,0.754505365544305,0.842773567228942,0.576226371643824,1.09127391015665,1.42888107384922,0.231768651889711,0.38581844092741,1.23625770240992,1.17759136107518,0,0.354951612318675,0.715308569841963,0.436039249896986,0.846984423737976,0.507687647350059,0.548783918618318,1.31534855718921,0.543216455383447,0.561142271657738,0.593175090620871,0.492522411877817,0.409231043169689,0.154936841185966,0.578719832943424,0,0.233931608445408,0.429742108096597,0,0.220591419119515,0.463735671240843|short_description=p2@Nlrc4}} | ||
|EntrezGene=268973 | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|UniProt=Q3UP24 | |||
|association_with_transcript=-28bp_to_ENSMUST00000052124,NM_001033367,uc008doc.1_5end | |||
|description=CAGE_peak_2_at_Nlrc4_5end | |||
|id=chr17:74858476..74858510,- | |||
|ontology_enrichment_celltype=CL:0002563!6.10e-08!9;CL:0002251!6.10e-08!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,2.36e-13,9;CL:0002251,2.36e-13,9;CL:0000239,7.56e-10,6;CL:0000677,7.56e-10,6;CL:0000584,7.56e-10,6;CL:0000075,2.83e-08,7;CL:0002076,4.07e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!4.89e-17!59;UBERON:0000160!2.00e-13!43;UBERON:0000344!1.08e-12!15;UBERON:0001242!4.73e-11!13;UBERON:0000060!4.73e-11!13;UBERON:0001262!4.73e-11!13;UBERON:0004786!4.73e-11!13;UBERON:0004923!9.27e-10!24;UBERON:0003350!6.10e-08!9;UBERON:0004808!6.10e-08!9;UBERON:0001277!6.10e-08!9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,3.79e-39,47;UBERON:0000160,3.64e-37,31;UBERON:0000344,3.90e-22,15;UBERON:0001242,4.25e-19,13;UBERON:0001262,4.25e-19,13;UBERON:0004786,4.25e-19,13;UBERON:0004923,1.41e-13,24;UBERON:0003350,2.36e-13,9;UBERON:0004808,2.36e-13,9;UBERON:0001277,2.36e-13,9;UBERON:0001007,4.34e-11,116;UBERON:0001555,4.34e-11,116;UBERON:0007026,4.34e-11,116;UBERON:0004119,1.03e-10,118;UBERON:0000925,1.03e-10,118;UBERON:0006595,1.03e-10,118;UBERON:0000485,1.66e-10,11;UBERON:0004921,1.30e-09,114;UBERON:0002108,5.26e-07,4 | |||
|phase1_expression=0.160148847104794,21.6364752736404,18.654968814971,25.7094579610806,19.5349334679075,11.2479112180966,10.0453435456076,0.387369970324729,0.140788722151667,0,0,0,0.171200729931206,0.524522414513984,0,0.809901069559304,0.699561878128147,2.68142840554502,3.01651753932625,2.12194825899015,0.17008658030214,0,0,22.8789164594572,16.7468775179034,14.9300310669905,14.2151458732495,17.453169847557,29.453630015738,15.8778981748756,11.3082560434205,0,0,0,12.9983228888074,7.31432439577366,11.637653306955,0.418531630736908,0,1.57057123192139,0.588231488031014,0,0,0,0,0,0,0,0,0,0,0,1.67782606057736,0,1.00828139742739,0,0,0.515672092277442,0,0,0,0,0,0.899899717281399,0,0,0.299600110518405,0.384218305321555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0,0,0,0,0,0,0,0,0,0,1.40444420131752,0,0,0,0,0,0,0,0,0,0,3.53970027129086,3.88406825470758,0,0,0,0,0.150722640552623,0.117588707135705,0,1.23597483867187,0.433798070759735,1.76922110389975,0,0,0,13.0474232852686,0,0,18.3929079750186,2.03685711660064,1.19980546198682,1.27070227073065,0,0,0,0,0,0,0,0,0.124406970610093,0,0.210441855886474,0,0,0,0,0,0,0.0937017245597288,0.258703370739016,0,0,0,0,0,0,0.205782136407943,0,2.1066395619397,1.02939162845886,0.284163499395593,0,0,0,0,0,0,0.232533944750408,0,0,0,0,0.0810688095458557,0.146199987425332,0,0.536825675041487,0,0,39.6502539580558,14.2803305998314,0,0.928946687441754,4.12375876230699,6.25218926332362,7.11609740303585,13.1255682017666,11.3886974770683,16.1404975629531,15.3314477368164,13.3300836267571,11.1129529657898,12.5834717211591,13.400559092231,16.1304431336037,0.189667900953082,0.228497025219458,0,0.203651327845314,0.193952487167626,0.0701358198903186,0,0.147610147979602,0,0.123397163921801,0.296452627087149,0,0,0,0,0.241177159752417,0,0,0.810676133875177,0,0,0,0,0.252578877947112,0.179397413521912,0,0,0,0,0.169745085775188,0,0,0,0,0,0,0,0.163863314715738,0.172684981865896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141940085208269,0,0,0.989820737835213,0,0,0,0,0,0,4.65170927702798,0,0.356497378384721,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0.23467170806371,0,0,0.32977250588296,0.161464426695906,0,0.238744688006273,0,14.2825609948627,0,0.854354403989263,0,0,0,0.956859594047176,0.228778173206523,0.679913719975421,1.11961161858926,0.552799895217695,14.3200592702267,0,1.42323626988794,3.02414954301044,3.76358932826044,4.58561383866973,5.93403124093211,5.2898211664215,8.11443420150492,12.8318823558875,0,0,0,0,0,0,0,0,0,0,0.241584120826006,0,0,0,0.308132871494482,0,0,0,0.120195449519969,0,0,0.304827226619999,0.100826185136841,0.194915761479505,0.0962118416403295,0.350630706544707,0,0,0,0,0.19318959403219,0,0.73260649706906,0.214368379079066,0.501572104035363,0,0,0,0,0,0,0,0.45032120322422,0,0,0,0,0,0.243106717068294,0.209613162627982,0.367687016900028,1.55572709461131,0.618105171716683,0,0.252697211763798,0.50695859978048,0.754505365544305,0.842773567228942,0.576226371643824,1.09127391015665,1.42888107384922,0.231768651889711,0.38581844092741,1.23625770240992,1.17759136107518,0,0.354951612318675,0.715308569841963,0.436039249896986,0.846984423737976,0.507687647350059,0.548783918618318,1.31534855718921,0.543216455383447,0.561142271657738,0.593175090620871,0.492522411877817,0.409231043169689,0.154936841185966,0.578719832943424,0,0.233931608445408,0.429742108096597,0,0.220591419119515,0.463735671240843 | |||
|short_description=p2@Nlrc4 | |||
}} |
Revision as of 15:19, 13 September 2013
Short description: | p2@Nlrc4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Nlrc4_5end |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | -28bp_to_ENSMUST00000052124, NM_001033367, uc008doc.1_5end |
EntrezGene: | Nlrc4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 2.36e-13 | 9 |
epithelial cell of alimentary canal | 2.36e-13 | 9 |
brush border epithelial cell | 7.56e-10 | 6 |
gut absorptive cell | 7.56e-10 | 6 |
enterocyte | 7.56e-10 | 6 |
columnar/cuboidal epithelial cell | 2.83e-08 | 7 |
endo-epithelial cell | 4.07e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 3.79e-39 | 47 |
intestine | 3.64e-37 | 31 |
mucosa | 3.90e-22 | 15 |
intestinal mucosa | 4.25e-19 | 13 |
wall of intestine | 4.25e-19 | 13 |
gastrointestinal system mucosa | 4.25e-19 | 13 |
organ component layer | 1.41e-13 | 24 |
epithelium of mucosa | 2.36e-13 | 9 |
gastrointestinal system epithelium | 2.36e-13 | 9 |
intestinal epithelium | 2.36e-13 | 9 |
digestive system | 4.34e-11 | 116 |
digestive tract | 4.34e-11 | 116 |
primitive gut | 4.34e-11 | 116 |
endoderm-derived structure | 1.03e-10 | 118 |
endoderm | 1.03e-10 | 118 |
presumptive endoderm | 1.03e-10 | 118 |
simple columnar epithelium | 1.66e-10 | 11 |
subdivision of digestive tract | 1.30e-09 | 114 |
small intestine | 5.26e-07 | 4 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.