Personal tools

UBERON:0000012: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 5: Line 5:
|def="The part of the peripheral nervous system consisting of efferent nerves responsible for stimulating muscle contraction, including all the neurons connected with skeletal muscles, skin, and sense organs[WP, modified]." [Wikipedia:Somatic_nervous_system]
|def="The part of the peripheral nervous system consisting of efferent nerves responsible for stimulating muscle contraction, including all the neurons connected with skeletal muscles, skin, and sense organs[WP, modified]." [Wikipedia:Somatic_nervous_system]
|xref=EFO:0000892;;EFO:0000898;;FMA:9904;;MA:0002850;;MAT:0000099;;MAT:0000342;;MIAA:0000099;;MIAA:0000342;;NIF_GrossAnatomy:nlx_anat_100301;;WBbt:0005760
|xref=EFO:0000892;;EFO:0000898;;FMA:9904;;MA:0002850;;MAT:0000099;;MAT:0000342;;MIAA:0000099;;MIAA:0000342;;NIF_GrossAnatomy:nlx_anat_100301;;WBbt:0005760
|is_a=UBERON:0000073
|is_a=UBERON:0004121;;UBERON:0011216
|synonym="PNS - somatic" EXACT [];;"somatic nervous system, somatic division" EXACT [NIF_GrossAnatomy:nlx_anat_100301];;"somatic peripheral nervous system" EXACT [NIF_GrossAnatomy:nlx_anat_100301]
|synonym="PNS - somatic" EXACT [];;"somatic nervous system, somatic division" EXACT [NIF_GrossAnatomy:nlx_anat_100301];;"somatic peripheral nervous system" EXACT [NIF_GrossAnatomy:nlx_anat_100301]
|comment=
|comment=
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=uberon_slim
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=

Latest revision as of 13:24, 27 June 2012

Name:somatic nervous system
Definition:"The part of the peripheral nervous system consisting of efferent nerves responsible for stimulating muscle contraction, including all the neurons connected with skeletal muscles, skin, and sense organs[WP, modified]." [Wikipedia:Somatic_nervous_system]
Xrefs:
links:

EFO:0000892
EFO:0000898
FMA:9904
MA:0002850
MAT:0000099
MAT:0000342
MIAA:0000099
MIAA:0000342
NIF_GrossAnatomy:nlx_anat_100301

WBbt:0005760
Synonyms: "PNS - somatic" EXACT []
"somatic nervous system, somatic division" EXACT [NIF_GrossAnatomy:nlx_anat_100301]
"somatic peripheral nervous system" EXACT [NIF_GrossAnatomy:nlx_anat_100301]
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0004121(ectoderm-derived structure),UBERON:0011216(organ system subdivision)
part_of:UBERON:0000010(peripheral nervous system)



Children

part of:UBERON:0001813 (somatic nerve plexus)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000012 (somatic nervous system), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


No analysis results