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UBERON:0002546

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Name:cranial placode
Definition:"Ectodermal placode that develops in the head into a part of the sensory nervous system. With a few exceptions (lens, adenohypophyseal), cranial placodes are neurogenic" https://github.com/seger/aao/issues/4, UBERON:cjm
Xrefs:
links:

AAO:0010466
MAT:0000369
MIAA:0000369

XAO:0000305
Synonyms: "placode" BROAD [Wikipedia:Placode]
Comments:Editor note: to avoid confusion, we include neurogenic placode as a subclass. Do not merge. Terminological notes: The term placode or placodes also applies to developing organs such as teeth, mammary glands, hair follicles, feathers and scales. We include a separate parent class for this. Taxon notes: Comparisons of developmental gene expression suggest that the anterior ectoderm in amphioxus may be homologous to the vertebrate olfactory placode, the only vertebrate placode with primary, not secondary, neurons[PMID:11523831].
Alt_id: UBERON:MIAA_0000369-XAO_0000305

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005085(ectodermal placode)



Children

is a:UBERON:0003073 (lens placode),UBERON:0009122 (adenohypophyseal placode),UBERON:0009955 (neurogenic placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002546 (cranial placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.41e-88FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.41e-88FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_d7408ddd600950bd0d37a333082a72a5p1@CRYBB3
1.87e-86FFCP PHASE1:Mm9::chr11:89702580..89702593,-#_e751c663870c04b3e9be3a6d17109921p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_e751c663870c04b3e9be3a6d17109921p6@Jag1
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_e751c663870c04b3e9be3a6d17109921p@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr2:29935952..29935993,+#_e751c663870c04b3e9be3a6d17109921p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr1:78523144..78523177,+#_e751c663870c04b3e9be3a6d17109921p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971325..93971337,-#_e751c663870c04b3e9be3a6d17109921p@chr16:93971325..93971337, -
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_e751c663870c04b3e9be3a6d17109921p4@Chrna10
1.87e-86FFCP PHASE1:Mm9::chr3:106986057..106986062,+#_e751c663870c04b3e9be3a6d17109921p1@Kcna10
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_e751c663870c04b3e9be3a6d17109921p7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr6:86746562..86746579,-#_e751c663870c04b3e9be3a6d17109921p@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr8:13414266..13414279,+#_e751c663870c04b3e9be3a6d17109921p@chr8:13414266..13414279, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464168..53464175,+#_e751c663870c04b3e9be3a6d17109921p@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_e751c663870c04b3e9be3a6d17109921p@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr11:89702580..89702593,-#_e751c663870c04b3e9be3a6d17109921p@chr11:89702580..89702593, -
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_e751c663870c04b3e9be3a6d17109921p2@Strc
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_e751c663870c04b3e9be3a6d17109921p@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_e751c663870c04b3e9be3a6d17109921p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_e751c663870c04b3e9be3a6d17109921p@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_e751c663870c04b3e9be3a6d17109921p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_e751c663870c04b3e9be3a6d17109921p4@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:121206695..121206711,-#_e751c663870c04b3e9be3a6d17109921p1@Strc
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_e751c663870c04b3e9be3a6d17109921p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr15:97806034..97806061,+#_e751c663870c04b3e9be3a6d17109921p@chr15:97806034..97806061, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_e751c663870c04b3e9be3a6d17109921p13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr5:3909290..3909299,+#_e751c663870c04b3e9be3a6d17109921p@chr5:3909290..3909299, +
1.87e-86FFCP PHASE1:Mm9::chr10:67371994..67372010,+#_e751c663870c04b3e9be3a6d17109921p@chr10:67371994..67372010, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_e751c663870c04b3e9be3a6d17109921p5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr4:130461150..130461185,+#_e751c663870c04b3e9be3a6d17109921p@chr4:130461150..130461185, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983095..13983100,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983095..13983100, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_e751c663870c04b3e9be3a6d17109921p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr13:43699228..43699239,+#_e751c663870c04b3e9be3a6d17109921p@chr13:43699228..43699239, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr3:154693281..154693317,-#_e751c663870c04b3e9be3a6d17109921p@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_e751c663870c04b3e9be3a6d17109921p2@Gpr152
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_e751c663870c04b3e9be3a6d17109921p@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr5:150945209..150945220,+#_e751c663870c04b3e9be3a6d17109921p@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr12:109905399..109905416,+#_e751c663870c04b3e9be3a6d17109921p@chr12:109905399..109905416, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_e751c663870c04b3e9be3a6d17109921p@chr6:113251570..113251578, +
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_e751c663870c04b3e9be3a6d17109921p2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_e751c663870c04b3e9be3a6d17109921p@chr9:41495920..41495928, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464178..53464186,+#_e751c663870c04b3e9be3a6d17109921p@chr2:53464178..53464186, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_e751c663870c04b3e9be3a6d17109921p15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_e751c663870c04b3e9be3a6d17109921p2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_e751c663870c04b3e9be3a6d17109921p@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr1:93235228..93235249,+#_e751c663870c04b3e9be3a6d17109921p@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_e751c663870c04b3e9be3a6d17109921p4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_e751c663870c04b3e9be3a6d17109921p@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_e751c663870c04b3e9be3a6d17109921p@chr9:56208792..56208814, -
1.87e-86FFCP PHASE1:Mm9::chr15:58480061..58480066,+#_e751c663870c04b3e9be3a6d17109921p5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_e751c663870c04b3e9be3a6d17109921p@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_e751c663870c04b3e9be3a6d17109921p4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_e751c663870c04b3e9be3a6d17109921p@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr4:101908153..101908163,+#_e751c663870c04b3e9be3a6d17109921p@chr4:101908153..101908163, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_e751c663870c04b3e9be3a6d17109921p@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr3:154459184..154459195,+#_e751c663870c04b3e9be3a6d17109921p@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_e751c663870c04b3e9be3a6d17109921p3@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_e751c663870c04b3e9be3a6d17109921p@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr1:63733478..63733491,-#_e751c663870c04b3e9be3a6d17109921p1@Dytn
1.87e-86FFCP PHASE1:Mm9::chr19:10536767..10536777,-#_e751c663870c04b3e9be3a6d17109921p@chr19:10536767..10536777, -
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_e751c663870c04b3e9be3a6d17109921p@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr15:103146966..103146971,-#_e751c663870c04b3e9be3a6d17109921p@chr15:103146966..103146971, -
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_e751c663870c04b3e9be3a6d17109921p7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr19:55256373..55256384,+#_e751c663870c04b3e9be3a6d17109921p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_e751c663870c04b3e9be3a6d17109921p4@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr7:109052262..109052291,-#_e751c663870c04b3e9be3a6d17109921p1@Tomt
1.87e-86FFCP PHASE1:Mm9::chrX:154140781..154140788,+#_e751c663870c04b3e9be3a6d17109921p@chrX:154140781..154140788, +
1.87e-86FFCP PHASE1:Mm9::chr3:69811606..69811616,+#_e751c663870c04b3e9be3a6d17109921p2@Otol1
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_e751c663870c04b3e9be3a6d17109921p@chr19:55256373..55256384, +
1.87e-86FFCP PHASE2:Mm9::chr1:60561636..60561645,-#_e751c663870c04b3e9be3a6d17109921p@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_e751c663870c04b3e9be3a6d17109921p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_e751c663870c04b3e9be3a6d17109921p1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr13:58283583..58283607,-#_e751c663870c04b3e9be3a6d17109921p@chr13:58283583..58283607, -
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_e751c663870c04b3e9be3a6d17109921p1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr3:35012397..35012405,+#_e751c663870c04b3e9be3a6d17109921p@chr3:35012397..35012405, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215306..89215315,+#_e751c663870c04b3e9be3a6d17109921p@chr15:89215306..89215315, +
1.87e-86FFCP PHASE1:Mm9::chr10:107349430..107349440,-#_e751c663870c04b3e9be3a6d17109921p3@Otogl
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_e751c663870c04b3e9be3a6d17109921p2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr11:8405038..8405048,-#_e751c663870c04b3e9be3a6d17109921p@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr1:93235253..93235264,+#_e751c663870c04b3e9be3a6d17109921p@chr1:93235253..93235264, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_e751c663870c04b3e9be3a6d17109921p3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_e751c663870c04b3e9be3a6d17109921p@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr5:30710403..30710406,-#_e751c663870c04b3e9be3a6d17109921p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr1:172843885..172843890,-#_e751c663870c04b3e9be3a6d17109921p@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr12:13508015..13508019,+#_e751c663870c04b3e9be3a6d17109921p@chr12:13508015..13508019, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_e751c663870c04b3e9be3a6d17109921p11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_e751c663870c04b3e9be3a6d17109921p@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011921..67011934,+#_e751c663870c04b3e9be3a6d17109921p2@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr14:63099970..63099980,-#_e751c663870c04b3e9be3a6d17109921p@chr14:63099970..63099980, -
1.87e-86FFCP PHASE2:Mm9::chr13:78322370..78322376,-#_e751c663870c04b3e9be3a6d17109921p4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr1:182528371..182528385,+#_e751c663870c04b3e9be3a6d17109921p@chr1:182528371..182528385, +
1.87e-86FFCP PHASE2:Mm9::chr7:141605556..141605563,-#_e751c663870c04b3e9be3a6d17109921p@chr7:141605556..141605563, -
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_e751c663870c04b3e9be3a6d17109921p10@Otof
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_e751c663870c04b3e9be3a6d17109921p@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr7:109265277..109265288,-#_e751c663870c04b3e9be3a6d17109921p4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_e751c663870c04b3e9be3a6d17109921p@chr14:102297747..102297765, +
1.87e-86FFCP PHASE1:Mm9::chr4:115556939..115556945,+#_e751c663870c04b3e9be3a6d17109921p4@Kncn

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