Personal tools

UBERON:0003067: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
(One intermediate revision by the same user not shown)
Line 1: Line 1:
{{UBERON
{{UBERON
|id=UBERON:0003067
|alt_id=UBERON:XAO_0000187-ZFA_0001310
|name=dorsolateral placode
|namespace=
|def="Lateral neurogenic placodes positioned dorsal of the epibranchial placodes." [ZFIN:curator]
|xref=TAO:0001310;;VHOG:0000103;;XAO:0000187;;ZFA:0001310
|is_a=UBERON:0009955
|synonym="dorsolateral placodes" EXACT PLURAL [ZFA:0001310]
|comment=
|comment=
|alt_id=UBERON:XAO_0000187-ZFA_0001310
|disjoint_from=
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Lateral neurogenic placodes positioned dorsal of the epibranchial placodes." [ZFIN:curator]
|subset=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003067
|is_a=UBERON:0009955
|is_obsolete=
|located_in=
|located_in=
|name=dorsolateral placode
|namespace=FANTOM
|obo_creation_date=
|part_of=
|part_of=
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|subset=
|preceded_by=
|synonym="dorsolateral placodes" EXACT PLURAL [ZFA:0001310]
|union_of=
|xref=TAO:0001310;;VHOG:0000103;;XAO:0000187;;ZFA:0001310
}}
}}

Latest revision as of 17:36, 12 September 2014

Name:dorsolateral placode
Namespace:FANTOM
Definition:"Lateral neurogenic placodes positioned dorsal of the epibranchial placodes." [ZFIN:curator]
Xrefs:
links:

TAO:0001310
VHOG:0000103
XAO:0000187

ZFA:0001310
Synonyms: "dorsolateral placodes" EXACT PLURAL [ZFA:0001310]
Alt_id: UBERON:XAO_0000187-ZFA_0001310

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0009955(neurogenic placode)



Children

is a:UBERON:0003069 (otic placode)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003067 (dorsolateral placode), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_6f69956b8073250c371333dfea6820cep@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr1:43454162..43454170,-#_6f69956b8073250c371333dfea6820cep@chr1:43454162..43454170, -
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_6f69956b8073250c371333dfea6820cep6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_6f69956b8073250c371333dfea6820cep2@Strc
1.87e-86FFCP PHASE1:Mm9::chr11:4689837..4689845,-#_6f69956b8073250c371333dfea6820cep@chr11:4689837..4689845, -
1.87e-86FFCP PHASE1:Mm9::chr17:27252925..27252939,+#_6f69956b8073250c371333dfea6820cep@chr17:27252925..27252939, +
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_6f69956b8073250c371333dfea6820cep9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr1:78523144..78523177,+#_6f69956b8073250c371333dfea6820cep@chr1:78523144..78523177, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_6f69956b8073250c371333dfea6820cep1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_6f69956b8073250c371333dfea6820cep@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_6f69956b8073250c371333dfea6820cep@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843847..172843880,-#_6f69956b8073250c371333dfea6820cep@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr1:182528388..182528403,+#_6f69956b8073250c371333dfea6820cep@chr1:182528388..182528403, +
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_6f69956b8073250c371333dfea6820cep2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr4:133802857..133802884,+#_6f69956b8073250c371333dfea6820cep@chr4:133802857..133802884, +
1.87e-86FFCP PHASE1:Mm9::chr19:10536797..10536802,-#_6f69956b8073250c371333dfea6820cep@chr19:10536797..10536802, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983160..13983167,+#_6f69956b8073250c371333dfea6820cep@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_6f69956b8073250c371333dfea6820cep13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr3:100724698..100724706,+#_6f69956b8073250c371333dfea6820cep@chr3:100724698..100724706, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_6f69956b8073250c371333dfea6820cep2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_6f69956b8073250c371333dfea6820cep5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_6f69956b8073250c371333dfea6820cep6@Fam70b
1.87e-86FFCP PHASE1:Mm9::chr13:78322383..78322395,-#_6f69956b8073250c371333dfea6820cep2@uc007rhb.1
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_6f69956b8073250c371333dfea6820cep@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr15:89215319..89215330,+#_6f69956b8073250c371333dfea6820cep@chr15:89215319..89215330, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123554..102123566,+#_6f69956b8073250c371333dfea6820cep4@BC030867
1.87e-86FFCP PHASE2:Mm9::chr5:28035962..28035983,+#_6f69956b8073250c371333dfea6820cep@chr5:28035962..28035983, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843796..172843799,-#_6f69956b8073250c371333dfea6820cep@chr1:172843796..172843799, -
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_6f69956b8073250c371333dfea6820cep@chr3:81012915..81012923, +
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_6f69956b8073250c371333dfea6820cep4@Otogl
1.87e-86FFCP PHASE1:Mm9::chr5:68423014..68423037,+#_6f69956b8073250c371333dfea6820cep1@Grxcr1
1.87e-86FFCP PHASE1:Mm9::chr18:66033526..66033539,-#_6f69956b8073250c371333dfea6820cep@chr18:66033526..66033539, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971357..93971363,-#_6f69956b8073250c371333dfea6820cep@chr16:93971357..93971363, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983179..13983190,+#_6f69956b8073250c371333dfea6820cep@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207965..42207978,-#_6f69956b8073250c371333dfea6820cep5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr10:107349378..107349390,-#_6f69956b8073250c371333dfea6820cep1@Otogl
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_6f69956b8073250c371333dfea6820cep@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_6f69956b8073250c371333dfea6820cep2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_6f69956b8073250c371333dfea6820cep2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr11:94371127..94371139,-#_6f69956b8073250c371333dfea6820cep@chr11:94371127..94371139, -
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_6f69956b8073250c371333dfea6820cep2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr3:35012425..35012439,+#_6f69956b8073250c371333dfea6820cep@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr1:16651649..16651655,+#_6f69956b8073250c371333dfea6820cep@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr14:102297728..102297742,+#_6f69956b8073250c371333dfea6820cep@chr14:102297728..102297742, +
1.87e-86FFCP PHASE2:Mm9::chr2:29935952..29935993,+#_6f69956b8073250c371333dfea6820cep7@Pkn3
1.87e-86FFCP PHASE1:Mm9::chr5:30710416..30710440,-#_6f69956b8073250c371333dfea6820cep2@Otof
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_6f69956b8073250c371333dfea6820cep5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr9:42206784..42206793,-#_6f69956b8073250c371333dfea6820cep@chr9:42206784..42206793, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_6f69956b8073250c371333dfea6820cep3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_6f69956b8073250c371333dfea6820cep@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_6f69956b8073250c371333dfea6820cep@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_6f69956b8073250c371333dfea6820cep@chr4:154208086..154208123, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335903..31335921,-#_6f69956b8073250c371333dfea6820cep2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr3:154459184..154459195,+#_6f69956b8073250c371333dfea6820cep@chr3:154459184..154459195, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_6f69956b8073250c371333dfea6820cep@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr7:109265277..109265288,-#_6f69956b8073250c371333dfea6820cep4@Chrna10
1.87e-86FFCP PHASE2:Mm9::chr19:21028739..21028785,-#_6f69956b8073250c371333dfea6820cep1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr14:47293496..47293510,-#_6f69956b8073250c371333dfea6820cep@chr14:47293496..47293510, -
1.87e-86FFCP PHASE2:Mm9::chr2:9811162..9811171,-#_6f69956b8073250c371333dfea6820cep2@9230102O04Rik
1.87e-86FFCP PHASE2:Mm9::chr14:102297728..102297742,+#_6f69956b8073250c371333dfea6820cep@chr14:102297728..102297742, +
1.87e-86FFCP PHASE1:Mm9::chr9:50968647..50968668,-#_6f69956b8073250c371333dfea6820cep@chr9:50968647..50968668, -
1.87e-86FFCP PHASE2:Mm9::chr11:8405038..8405048,-#_6f69956b8073250c371333dfea6820cep@chr11:8405038..8405048, -
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_6f69956b8073250c371333dfea6820cep1@Tomt
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_6f69956b8073250c371333dfea6820cep9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr5:30710403..30710406,-#_6f69956b8073250c371333dfea6820cep10@Otof
1.87e-86FFCP PHASE1:Mm9::chr14:20649897..20649907,+#_6f69956b8073250c371333dfea6820cep@chr14:20649897..20649907, +
1.87e-86FFCP PHASE1:Mm9::chr18:81327205..81327211,+#_6f69956b8073250c371333dfea6820cep@chr18:81327205..81327211, +
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_6f69956b8073250c371333dfea6820cep3@Tmprss3
1.87e-86FFCP PHASE2:Mm9::chr9:42207792..42207805,-#_6f69956b8073250c371333dfea6820cep11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_6f69956b8073250c371333dfea6820cep@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257454..78257465,+#_6f69956b8073250c371333dfea6820cep@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr15:89215306..89215315,+#_6f69956b8073250c371333dfea6820cep@chr15:89215306..89215315, +
1.87e-86FFCP PHASE2:Mm9::chr4:101908153..101908163,+#_6f69956b8073250c371333dfea6820cep@chr4:101908153..101908163, +
1.87e-86FFCP PHASE2:Mm9::chr16:93971357..93971363,-#_6f69956b8073250c371333dfea6820cep@chr16:93971357..93971363, -
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_6f69956b8073250c371333dfea6820cep@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr2:170417150..170417155,-#_6f69956b8073250c371333dfea6820cep@chr2:170417150..170417155, -
1.87e-86FFCP PHASE1:Mm9::chr4:115556989..115556997,+#_6f69956b8073250c371333dfea6820cep1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr18:59222033..59222043,+#_6f69956b8073250c371333dfea6820cep7@A730017C20Rik
1.87e-86FFCP PHASE2:Mm9::chr8:13414289..13414295,+#_6f69956b8073250c371333dfea6820cep@chr8:13414289..13414295, +
1.87e-86FFCP PHASE2:Mm9::chr9:66860888..66860899,+#_6f69956b8073250c371333dfea6820cep@chr9:66860888..66860899, +
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_6f69956b8073250c371333dfea6820cep@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr9:42207792..42207805,-#_6f69956b8073250c371333dfea6820cep11@Tecta
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_6f69956b8073250c371333dfea6820cep@chr2:73232344..73232356, -
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_6f69956b8073250c371333dfea6820cep2@Espnl
1.87e-86FFCP PHASE1:Mm9::chr10:107156949..107156956,-#_6f69956b8073250c371333dfea6820cep3@Ptprq
1.87e-86FFCP PHASE1:Mm9::chr7:88068153..88068160,-#_6f69956b8073250c371333dfea6820cep10@Sec11a
1.87e-86FFCP PHASE2:Mm9::chr12:109905399..109905416,+#_6f69956b8073250c371333dfea6820cep@chr12:109905399..109905416, +
1.87e-86FFCP PHASE1:Mm9::chr3:31585340..31585360,+#_6f69956b8073250c371333dfea6820cep@chr3:31585340..31585360, +
1.87e-86FFCP PHASE1:Mm9::chr2:14685072..14685084,+#_6f69956b8073250c371333dfea6820cep41@Cacnb2
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_6f69956b8073250c371333dfea6820cep2@Slc26a5
1.87e-86FFCP PHASE2:Mm9::chr10:97109753..97109764,+#_6f69956b8073250c371333dfea6820cep3@Epyc
1.87e-86FFCP PHASE2:Mm9::chr2:121206677..121206683,-#_6f69956b8073250c371333dfea6820cep3@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:30619378..30619412,-#_6f69956b8073250c371333dfea6820cep11@Tsga14
1.87e-86FFCP PHASE2:Mm9::chr6:113251570..113251578,+#_6f69956b8073250c371333dfea6820cep@chr6:113251570..113251578, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_6f69956b8073250c371333dfea6820cep@chr15:65641741..65641748, +
1.87e-86FFCP PHASE2:Mm9::chr13:76964459..76964469,+#_6f69956b8073250c371333dfea6820cep15@Mctp1
1.87e-86FFCP PHASE1:Mm9::chr5:144115382..144115389,+#_6f69956b8073250c371333dfea6820cep@chr5:144115382..144115389, +
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_6f69956b8073250c371333dfea6820cep@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr1:172843885..172843890,-#_6f69956b8073250c371333dfea6820cep@chr1:172843885..172843890, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_6f69956b8073250c371333dfea6820cep@chr7:139597684..139597691, +

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003067&oldid=3277502"