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{{UBERON
{{UBERON
|id=UBERON:0003129
|name=skull
|namespace=
|def="Anatomical structure that is part of the head consisting entirely of cranium and mandible." [http://sourceforge.net/tracker/?func=detail&aid=2962656&group_id=76834&atid=1205376, Wikipedia:Skull]
|xref=AAO:0000109;;BTO:0001295;;FMA:46565;;GAID:82;;galen:Skull;;MESH:A.02.835.232.781;;ncithesaurus:Skull;;OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA
|is_a=UBERON:0004765
|synonym="cranial skeleton" RELATED [];;"skeletal system of head" RELATED []
|comment=In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP].
|alt_id=
|alt_id=
|disjoint_from=
|comment=In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton
|union_of=
|created_by=
|created_by=
|obo_creation_date=
|def="Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=
|disjoint_from=
|has_quality=
|has_quality=
|id=UBERON:0003129
|is_a=UBERON:0000075 ;;UBERON:0010314
|is_obsolete=
|located_in=
|located_in=
|part_of=UBERON:0000033;;UBERON:0005944
|name=skull
|namespace=FANTOM
|obo_creation_date=
|part_of=UBERON:0000033;;UBERON:0010323
|preceded_by=
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|subset=uberon_slim
|synonym="cranial skeleton" RELATED [];;"skeletal system of head" RELATED []
|union_of=
|xref=BTO:0001295;;EHDAA2:0000325;;EMAPA:17680;;FMA:46565;;GAID:82;;galen:Skull;;MESH:A.02.835.232.781;;ncithesaurus:Skull;;OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA;;SCTID:110530005
}}
}}

Latest revision as of 17:38, 12 September 2014

Name:skull
Namespace:FANTOM
Definition:"Anatomical structure that is part of the head consisting entirely of cranium and mandible[WP]." [http://sourceforge.net/tracker/?func
Xrefs:
links:

BTO:0001295
EHDAA2:0000325
EMAPA:17680
FMA:46565
GAID:82
galen:Skull
MESH:A.02.835.232.781
ncithesaurus:Skull
OpenCyc:Mx4rvVjOsZwpEbGdrcN5Y29ycA

SCTID:110530005
Synonyms: "cranial skeleton" RELATED []
"skeletal system of head" RELATED []
Comments:In FMA the skull is divided into orbit, neurocranium (8 parts), viscerocranium (26 parts). Here we have a separate overlapping division into cranium and mandible. // A skull that is missing a mandible is only a cranium; this is the source of a very commonly made error in terminology. Those animals having skulls are called craniates[WP]. Editor/AO notes: in many ontologies, the structure called the cranium is inclusive of the mandible/lower jaw skeleton
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000075(subdivision of skeletal system),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0000033(head),UBERON:0010323(cranial skeletal system)



Children

part of:UBERON:0001825 (paranasal sinus),UBERON:0003128 (cranium),UBERON:0005744 (cranial conduit),UBERON:0011158 (primary subdivision of skull)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

  • 10195-103E6 (olfactory region, adult)
  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)

... further results Mouse (Mus musculus)

  • 10195-103E6 (olfactory region, adult)
  • 11223-116B8 (Fibroblast - Periodontal Ligament, donor4 (PL29))
  • 11238-116D5 (Fibroblast - Periodontal Ligament, donor1)
  • 11304-117B8 (Fibroblast - Periodontal Ligament, donor5 (PL30))
  • 11319-117D5 (Fibroblast - Periodontal Ligament, donor2)
  • 11380-118B3 (Fibroblast - Periodontal Ligament, donor6 (PLH3))
  • 11395-118C9 (Fibroblast - Periodontal Ligament, donor3)
  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003129 (skull), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.87e-86FFCP PHASE2:Mm9::chr3:106986057..106986062,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Kcna10
1.87e-86FFCP PHASE1:Mm9::chr11:102123535..102123544,+#_40d70c2e6c9363196e5764093c9b0a2ep5@BC030867
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:65641741..65641748, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257491..78257498,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr9:56208792..56208814,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:56208792..56208814, -
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255206..55255223,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr19:21028739..21028785,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tmc1
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983179..13983190, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257491..78257498,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:78257491..78257498, +
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_40d70c2e6c9363196e5764093c9b0a2ep@chrX:154140800..154140810, +
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:128881546..128881553, -
1.87e-86FFCP PHASE1:Mm9::chr6:113251614..113251623,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:113251614..113251623, +
1.87e-86FFCP PHASE2:Mm9::chr1:43454162..43454170,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:43454162..43454170, -
1.87e-86FFCP PHASE1:Mm9::chr10:107349392..107349413,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Otogl
1.87e-86FFCP PHASE2:Mm9::chr10:107349418..107349423,-#_40d70c2e6c9363196e5764093c9b0a2ep5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr1:93218694..93218705,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Espnl
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:47293487..47293493, -
1.87e-86FFCP PHASE2:Mm9::chr18:42158627..42158630,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr10:80806020..80806031,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:154693281..154693317, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_40d70c2e6c9363196e5764093c9b0a2ep10@Tecta
1.87e-86FFCP PHASE2:Mm9::chr7:88068153..88068160,-#_40d70c2e6c9363196e5764093c9b0a2ep10@Sec11a
1.87e-86FFCP PHASE1:Mm9::chr9:42207887..42207960,-#_40d70c2e6c9363196e5764093c9b0a2ep1@Tecta
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:150945209..150945220, +
1.87e-86FFCP PHASE1:Mm9::chr1:172843813..172843834,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr16:93971367..93971379, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011956..67011967,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr9:42206745..42206774,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42206745..42206774, -
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr5:147854240..147854249,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr1:154246932..154246939,+#_40d70c2e6c9363196e5764093c9b0a2ep7@Glt25d2
1.87e-86FFCP PHASE2:Mm9::chr10:80806047..80806059,-#_40d70c2e6c9363196e5764093c9b0a2ep4@Gipc3
1.87e-86FFCP PHASE2:Mm9::chr17:31335903..31335921,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr9:66860888..66860899,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:66860888..66860899, +
1.87e-86FFCP PHASE1:Mm9::chr8:13435173..13435186,+#_40d70c2e6c9363196e5764093c9b0a2ep6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr6:86746562..86746579,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr6:86746562..86746579, -
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_40d70c2e6c9363196e5764093c9b0a2ep5@Fer1l6
1.87e-86FFCP PHASE2:Mm9::chr9:42207777..42207789,-#_40d70c2e6c9363196e5764093c9b0a2ep7@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:109052297..109052300,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Tomt
1.87e-86FFCP PHASE1:Mm9::chrX:154140800..154140810,+#_40d70c2e6c9363196e5764093c9b0a2ep@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_40d70c2e6c9363196e5764093c9b0a2ep18@Trpm3
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr2:121206677..121206683,-#_40d70c2e6c9363196e5764093c9b0a2ep3@Strc
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:172843813..172843834, -
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_40d70c2e6c9363196e5764093c9b0a2ep7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr10:108316802..108316807,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr10:108316802..108316807, -
1.87e-86FFCP PHASE2:Mm9::chr4:130461150..130461185,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:130461150..130461185, +
1.87e-86FFCP PHASE2:Mm9::chr5:72652660..72652667,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:72652660..72652667, +
1.87e-86FFCP PHASE2:Mm9::chr2:136942131..136942142,-#_40d70c2e6c9363196e5764093c9b0a2ep6@Jag1
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:194818647..194818660, -
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Otog
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr14:31283072..31283081,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:31283072..31283081, -
1.87e-86FFCP PHASE1:Mm9::chr7:133957514..133957529,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr7:133957514..133957529, +
1.87e-86FFCP PHASE1:Mm9::chr2:9811162..9811171,-#_40d70c2e6c9363196e5764093c9b0a2ep2@9230102O04Rik
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr11:102123535..102123544,+#_40d70c2e6c9363196e5764093c9b0a2ep5@BC030867
1.87e-86FFCP PHASE2:Mm9::chr11:75421384..75421397,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:75421384..75421397, +
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr9:42208142..42208157,-#_40d70c2e6c9363196e5764093c9b0a2ep10@Tecta
1.87e-86FFCP PHASE2:Mm9::chr8:13435173..13435186,+#_40d70c2e6c9363196e5764093c9b0a2ep6@Fam70b
1.87e-86FFCP PHASE2:Mm9::chr17:13983160..13983167,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983160..13983167, +
1.87e-86FFCP PHASE2:Mm9::chr10:81091447..81091464,+#_40d70c2e6c9363196e5764093c9b0a2ep9@Ankrd24
1.87e-86FFCP PHASE1:Mm9::chr2:75320183..75320189,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:75320183..75320189, +
1.87e-86FFCP PHASE1:Mm9::chr1:93218694..93218705,+#_40d70c2e6c9363196e5764093c9b0a2ep1@Espnl
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr4:63079735..63079745, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207777..42207789,-#_40d70c2e6c9363196e5764093c9b0a2ep7@Tecta
1.87e-86FFCP PHASE2:Mm9::chr4:151505798..151505818,-#_40d70c2e6c9363196e5764093c9b0a2ep21@Espn
1.87e-86FFCP PHASE2:Mm9::chr19:4140290..4140321,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Gpr152
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:16651649..16651655, +
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr18:42158627..42158630, -
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_40d70c2e6c9363196e5764093c9b0a2ep13@Tsga14
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr2:67011921..67011934,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr9:42207965..42207978,-#_40d70c2e6c9363196e5764093c9b0a2ep5@Tecta
1.87e-86FFCP PHASE1:Mm9::chr1:60561636..60561645,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr1:60561636..60561645, -
1.87e-86FFCP PHASE2:Mm9::chr11:120222470..120222516,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Fscn2
1.87e-86FFCP PHASE1:Mm9::chr11:102123554..102123566,+#_40d70c2e6c9363196e5764093c9b0a2ep4@BC030867
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:65641779..65641790, +
1.87e-86FFCP PHASE1:Mm9::chr13:78257518..78257522,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:78257518..78257522, +
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr3:81012915..81012923,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr3:81012915..81012923, +
1.87e-86FFCP PHASE1:Mm9::chr11:75421384..75421397,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr11:75421384..75421397, +
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr8:13414266..13414279,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:13414266..13414279, +
1.87e-86FFCP PHASE1:Mm9::chr14:31283072..31283081,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr14:31283072..31283081, -
1.87e-86FFCP PHASE2:Mm9::chr9:42206784..42206793,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr9:42206784..42206793, -
1.87e-86FFCP PHASE2:Mm9::chr19:55255289..55255299,+#_40d70c2e6c9363196e5764093c9b0a2ep2@Tectb
1.87e-86FFCP PHASE2:Mm9::chr5:21371424..21371435,-#_40d70c2e6c9363196e5764093c9b0a2ep2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr8:94180607..94180619,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr17:13983198..13983203,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr13:78257518..78257522,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:78257518..78257522, +
1.87e-86FFCP PHASE1:Mm9::chr15:12848147..12848162,+#_40d70c2e6c9363196e5764093c9b0a2ep@chr15:12848147..12848162, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_40d70c2e6c9363196e5764093c9b0a2ep@chr13:48087761..48087775, -

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