Personal tools

CL:0000000

From FANTOM5_SSTAR

Jump to: navigation, search
Name:cell
Namespace:FANTOM
Definition:"A material entity of anatomical origin (part of or deriving from an organism) that has as its parts a maximally connected cell compartment surrounded by a plasma membrane." [CARO:mah]
Xrefs:
links:

FMA:68646
GO:0005623
KUPO:0000002
WBbt:0004017

XAO:0003012
Comments:The definition of cell is intended to represent all cells, and thus a cell is defined as a material entity and not an anatomical structure, which implies that it is part of an organism (or the entirety of one).


Ontology association

Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.



link to ontology dataset


data

Parents

is_a:GO:0005575(cellular_component)



Children


is a:CL:0000003 (native cell),FF:0000407 (whole cell (cellular fractionation control)),CL:0001034 (cell in vitro),FF:0103714 (VMRC-RCW cell)

Ontology Tree: Loaded from BioPortal


FF samples

It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens) Mouse (Mus musculus)



Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with CL:0000000 (cell), sorted by p-values
Analyst: Hideya Kawaji



link to source dataset
human : data

mouse : data

No analysis results for this cluster