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CL:0000034

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Name:stem cell
Namespace:FANTOM
Definition:"A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells." [GOC:tfm, MESH:A.11.872]
Xrefs:
links:
FMA:63368


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000003(native cell)



Children


is a:CL:0000723 (somatic stem cell),CL:0002322 (embryonic stem cell)
derives from:FF:0000255 (mouse inner hair stem cell sample),FF:0000626 (trophoblast cell line sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000034 (stem cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.28e-50FFCP PHASE1:Hg19::chr19:48828606..48828637,+#_99d45f4a828f979912c140ca0bcd9bc5p2@EMP3
6.28e-50FFCP PHASE2:Hg19::chr19:48828606..48828637,+#_99d45f4a828f979912c140ca0bcd9bc5p2@EMP3
2.07e-48FFCP PHASE2:Hg19::chr2:182322231..182322262,+#_83bd3c8a0d3fd5458356a7b759dd4b96p2@ITGA4
2.07e-48FFCP PHASE1:Hg19::chr2:182322231..182322262,+#_83bd3c8a0d3fd5458356a7b759dd4b96p2@ITGA4
4.04e-48FFCP PHASE1:Hg19::chr1:145096480..145096513,+#_aff3f9a791c485dcb088f74515f95103p2@SEC22B
4.04e-48FFCP PHASE2:Hg19::chr1:145096480..145096513,+#_aff3f9a791c485dcb088f74515f95103p2@SEC22B
2.81e-45FFCP PHASE1:Hg19::chr2:74781828..74781898,+#_6ae0d0c9c77feabece35dbfa159776dap1@DOK1
2.81e-45FFCP PHASE2:Hg19::chr2:74781828..74781898,+#_6ae0d0c9c77feabece35dbfa159776dap1@DOK1
1.99e-44FFCP PHASE2:Mm9::chr19:18807230..18807233,+#_4d36984376e8b64e1f20ae2fdaee8043p1@ENSMUST00000083007
1.99e-44FFCP PHASE1:Mm9::chr19:18807230..18807233,+#_4d36984376e8b64e1f20ae2fdaee8043p1@ENSMUST00000083007
9.15e-44FFCP PHASE1:Mm9::chr1:146456236..146456244,-#_603ab3441b0263c50d67d64b5255e8bap1@ENSMUST00000157471
9.15e-44FFCP PHASE2:Mm9::chr1:146456236..146456244,-#_603ab3441b0263c50d67d64b5255e8bap1@ENSMUST00000157471
8.75e-43FFCP PHASE2:Mm9::chr3:32910877..32910881,+#_9b2de709507ae253c98e92903f1c861fp1@ENSMUST00000122716
8.75e-43FFCP PHASE1:Mm9::chr3:32910877..32910881,+#_9b2de709507ae253c98e92903f1c861fp1@ENSMUST00000122716
1.09e-41FFCP PHASE2:Hg19::chr19:48828647..48828658,+#_cf76accab7f6199d1aa05f4006815365p3@EMP3
1.09e-41FFCP PHASE1:Hg19::chr19:48828647..48828658,+#_cf76accab7f6199d1aa05f4006815365p3@EMP3
1.54e-41FFCP PHASE1:Hg19::chr6:31704075..31704106,-#_376aca33178474988f79edaa43f6c686p2@CLIC1
1.54e-41FFCP PHASE2:Hg19::chr6:31704075..31704106,-#_376aca33178474988f79edaa43f6c686p2@CLIC1
9.24e-41FFCP PHASE2:Hg19::chr5:78281092..78281154,-#_910e99e0a6f89e2fb78fa58437c22e2cp1@ARSB
9.24e-41FFCP PHASE1:Hg19::chr5:78281092..78281154,-#_910e99e0a6f89e2fb78fa58437c22e2cp1@ARSB
1.2e-40FFCP PHASE1:Hg19::chr2:114647617..114647739,+#_748580aec65a035479109e93d72fd539p1@ACTR3
1.2e-40FFCP PHASE2:Hg19::chr2:114647617..114647739,+#_748580aec65a035479109e93d72fd539p1@ACTR3
1.37e-39FFCP PHASE2:Mm9::chr4:32085713..32085717,-#_ecedd6ac519aa9ec82f6449f6f561ba9p1@ENSMUST00000122491
1.37e-39FFCP PHASE1:Mm9::chr4:32085713..32085717,-#_ecedd6ac519aa9ec82f6449f6f561ba9p1@ENSMUST00000122491
2.57e-39FFCP PHASE2:Hg19::chr11:504446..504486,-#_0894102fe20d1dac7732f952c698af7fp4@RNH1
2.57e-39FFCP PHASE1:Hg19::chr11:504446..504486,-#_0894102fe20d1dac7732f952c698af7fp4@RNH1
3.91e-39FFCP PHASE1:Mm9::chr4:131826124..131826129,-#_8260206470f42ae13651b98b33b9f12ep1@ENSMUST00000104135
3.91e-39FFCP PHASE2:Mm9::chr4:131826124..131826129,-#_8260206470f42ae13651b98b33b9f12ep1@ENSMUST00000104135
6.79e-39FFCP PHASE1:Mm9::chr3:19460250..19460260,+#_4c12f24af5bcfde18d7b8bc22de7a5eap1@ENSMUST00000083241
6.79e-39FFCP PHASE2:Mm9::chr3:19460250..19460260,+#_4c12f24af5bcfde18d7b8bc22de7a5eap1@ENSMUST00000083241
1.41e-38FFCP PHASE2:Hg19::chr16:50300440..50300485,+#_7625e9afd5ecd0e6a5a28e39c82c64f4p1@ADCY7
1.41e-38FFCP PHASE1:Hg19::chr16:50300440..50300485,+#_7625e9afd5ecd0e6a5a28e39c82c64f4p1@ADCY7
4.4e-38FFCP PHASE1:Hg19::chr18:18691563..18691610,-#_a38f4d2c8df216a834e719e5451e728fp4@ROCK1
4.4e-38FFCP PHASE2:Hg19::chr18:18691563..18691610,-#_a38f4d2c8df216a834e719e5451e728fp4@ROCK1
8.07e-38FFCP PHASE1:Mm9::chr19:26334980..26334985,-#_9fbcd4f9fe0facabc4db60123a8c8619p1@ENSMUST00000122640
8.07e-38FFCP PHASE2:Mm9::chr19:26334980..26334985,-#_9fbcd4f9fe0facabc4db60123a8c8619p1@ENSMUST00000122640
1.19e-37FFCP PHASE1:Mm9::chr11:48596086..48596090,+#_49ea31cc17f6c8f59637bb9f129c0c62p@chr11:48596086..48596090, +
1.19e-37FFCP PHASE2:Mm9::chr11:48596086..48596090,+#_49ea31cc17f6c8f59637bb9f129c0c62p@chr11:48596086..48596090, +
1.72e-37FFCP PHASE2:Hg19::chr2:182322070..182322155,+#_3f806aca252bd2b374b8fee242969812p1@ITGA4
1.72e-37FFCP PHASE1:Hg19::chr2:182322070..182322155,+#_3f806aca252bd2b374b8fee242969812p1@ITGA4
7.4e-37FFCP PHASE1:Hg19::chr20:61584026..61584096,+#_e60010f6ecbe88de32e739803f124e03p1@SLC17A9
7.4e-37FFCP PHASE2:Hg19::chr20:61584026..61584096,+#_e60010f6ecbe88de32e739803f124e03p1@SLC17A9
1.7e-36FFCP PHASE2:Hg19::chr15:73076030..73076121,-#_02e60d9d86d32ee37a721b4ee3d34661p1@ADPGK
1.7e-36FFCP PHASE1:Hg19::chr15:73076030..73076121,-#_02e60d9d86d32ee37a721b4ee3d34661p1@ADPGK
1.96e-36FFCP PHASE1:Mm9::chr5:115939465..115939467,+#_13a3afab843d1ececc688627a2efa561p1@ENSMUST00000102044
1.96e-36FFCP PHASE2:Mm9::chr5:115939465..115939467,+#_13a3afab843d1ececc688627a2efa561p1@ENSMUST00000102044
2.38e-36FFCP PHASE1:Mm9::chr10:104477319..104477348,+#_34f5a173a748ca3ed3570427c1e7ede3p1@ENSMUST00000082498
2.38e-36FFCP PHASE2:Mm9::chr10:104477319..104477348,+#_34f5a173a748ca3ed3570427c1e7ede3p1@ENSMUST00000082498
4.2e-36FFCP PHASE2:Hg19::chr1:183604794..183604908,-#_381c869114de3544ec111d66fd55f5ffp1@ARPC5
4.2e-36FFCP PHASE1:Hg19::chr1:183604794..183604908,-#_381c869114de3544ec111d66fd55f5ffp1@ARPC5
4.29e-36FFCP PHASE2:Mm9::chr16:72264646..72264650,-#_3bbec27e120b10446af211a779e08e73p@chr16:72264646..72264650, -
4.29e-36FFCP PHASE1:Mm9::chr16:72264646..72264650,-#_3bbec27e120b10446af211a779e08e73p@chr16:72264646..72264650, -
5.67e-36FFCP PHASE2:Mm9::chr3:72925786..72925790,+#_f5cf21a12ffc6e2c67165a418925ec73p@chr3:72925786..72925790, +
5.67e-36FFCP PHASE1:Mm9::chr3:72925786..72925790,+#_f5cf21a12ffc6e2c67165a418925ec73+, p@chr3:72925786..72925790
7.73e-36FFCP PHASE2:Hg19::chr15:90358115..90358195,-#_0b5c87d34593483553062ecdb919b857p3@ANPEP
7.73e-36FFCP PHASE1:Hg19::chr15:90358115..90358195,-#_0b5c87d34593483553062ecdb919b857p3@ANPEP
9.41e-36FFCP PHASE2:Hg19::chr12:110888103..110888172,-#_c9c57f552251551c9756cebb195708d9p1@ARPC3
9.41e-36FFCP PHASE1:Hg19::chr12:110888103..110888172,-#_c9c57f552251551c9756cebb195708d9p1@ARPC3
1.48e-35FFCP PHASE2:Mm9::chr14:106660467..106660471,-#_436043f9b28c98037198da0d338edbaep1@ENSMUST00000083259
1.48e-35FFCP PHASE1:Mm9::chr14:106660467..106660471,-#_436043f9b28c98037198da0d338edbaep1@ENSMUST00000083259
1.52e-35FFCP PHASE2:Hg19::chr1:145096514..145096528,+#_ace4e7c3468aabd652e61484163377a5p3@SEC22B
1.52e-35FFCP PHASE1:Hg19::chr1:145096514..145096528,+#_ace4e7c3468aabd652e61484163377a5p3@SEC22B
3.22e-35FFCP PHASE2:Mm9::chr11:68886926..68886931,+#_c81128b8bb366be4b3c1388b769d56aep1@ENSMUST00000082965
3.22e-35FFCP PHASE1:Mm9::chr11:68886926..68886931,+#_c81128b8bb366be4b3c1388b769d56aep1@ENSMUST00000082965
3.55e-35FFCP PHASE2:Hg19::chr12:75874580..75874611,+#_2c540ab74538a1768c1d1686842f1c89p2@GLIPR1
3.55e-35FFCP PHASE1:Hg19::chr12:75874580..75874611,+#_2c540ab74538a1768c1d1686842f1c89p2@GLIPR1
4.93e-35FFCP PHASE1:Hg19::chr2:102091566..102091581,-#_b67e290c205c9ae325724f95d3323886p1@RFX8
4.93e-35FFCP PHASE2:Hg19::chr2:102091566..102091581,-#_b67e290c205c9ae325724f95d3323886p1@RFX8
1.03e-34FFCP PHASE2:Hg19::chr1:46016703..46016755,+#_c57cd2fbef9bb47cc5ff61677f1e6b17p2@AKR1A1
1.03e-34FFCP PHASE1:Hg19::chr1:46016703..46016755,+#_c57cd2fbef9bb47cc5ff61677f1e6b17p2@AKR1A1
2.43e-34FFCP PHASE1:Hg19::chr11:504867..504925,-#_be2f43d5bafe9e0c1832dd9fc9be5e41p3@RNH1
2.43e-34FFCP PHASE2:Hg19::chr11:504867..504925,-#_be2f43d5bafe9e0c1832dd9fc9be5e41p3@RNH1
2.47e-34FFCP PHASE2:Hg19::chr9:35112376..35112395,-#_9dc4c2b2c5f7641f21dc8d866c3bb855p@chr9:35112376..35112395, -
2.47e-34FFCP PHASE1:Hg19::chr9:35112376..35112395,-#_9dc4c2b2c5f7641f21dc8d866c3bb855-, p@chr9:35112376..35112395
4.52e-34FFCP PHASE1:Hg19::chr9:101984577..101984616,+#_052f043ea02ac9f2188619e2ef98e4fbp2@SEC61B
4.52e-34FFCP PHASE2:Hg19::chr9:101984577..101984616,+#_052f043ea02ac9f2188619e2ef98e4fbp2@SEC61B
4.61e-34FFCP PHASE2:Hg19::chr15:90358048..90358103,-#_e38d50b6e8eee72da7a469a44f3c1cccp1@ANPEP
4.61e-34FFCP PHASE1:Hg19::chr15:90358048..90358103,-#_e38d50b6e8eee72da7a469a44f3c1cccp1@ANPEP
5.21e-34FFCP PHASE2:Hg19::chrX:48432892..48432916,+#_441a7918b12f2b6e9e45290864386a87p1@RBM3
5.21e-34FFCP PHASE1:Hg19::chrX:48432892..48432916,+#_441a7918b12f2b6e9e45290864386a87p1@RBM3
1.84e-33FFCP PHASE1:Hg19::chr11:504942..504959,-#_876ea0a91bf74c4ce9958dec0de397a8p5@RNH1
1.84e-33FFCP PHASE2:Hg19::chr11:504942..504959,-#_876ea0a91bf74c4ce9958dec0de397a8p5@RNH1
2.03e-33FFCP PHASE2:Hg19::chr21:26934434..26934452,+#_ebe6e31522490dfd3a631400f6472548p1@MIR155HG
2.03e-33FFCP PHASE1:Hg19::chr21:26934434..26934452,+#_ebe6e31522490dfd3a631400f6472548p1@MIR155HG
2.43e-33FFCP PHASE1:Hg19::chr10:17271909..17272033,-#_8148d92ce5cfbc18dd4f8dc9e7db7be4p1@uc001iot.1
2.43e-33FFCP PHASE2:Hg19::chr10:17271909..17272033,-#_8148d92ce5cfbc18dd4f8dc9e7db7be4p1@uc001iot.1
2.52e-33FFCP PHASE2:Hg19::chr2:192542577..192542595,-#_a71122ef6b5eb4206cab4eff11a79ca3p@chr2:192542577..192542595, -
2.52e-33FFCP PHASE1:Hg19::chr2:192542577..192542595,-#_a71122ef6b5eb4206cab4eff11a79ca3p@chr2:192542577..192542595, -
5.08e-33FFCP PHASE1:Mm9::chr4:33051742..33051793,+#_bb81484b456e28595ac794c8fa7cad03p1@ENSMUST00000077575
5.08e-33FFCP PHASE2:Mm9::chr4:33051742..33051793,+#_bb81484b456e28595ac794c8fa7cad03p1@ENSMUST00000077575
5.11e-33FFCP PHASE2:Hg19::chr11:58345226..58345262,+#_277b9c9b7ad481ab67a178611bacffedp@chr11:58345226..58345262, +
5.11e-33FFCP PHASE1:Hg19::chr11:58345226..58345262,+#_277b9c9b7ad481ab67a178611bacffedp@chr11:58345226..58345262, +
7.22e-33FFCP PHASE1:Hg19::chr1:20987936..20987969,-#_83a35513c9c40fa732f5d59e7524c3c2p2@DDOST
7.22e-33FFCP PHASE2:Hg19::chr1:20987936..20987969,-#_83a35513c9c40fa732f5d59e7524c3c2p2@DDOST
8.55e-33FFCP PHASE2:Hg19::chr3:50378235..50378286,-#_8fe161314e880908df1706a2b5c7906dp2@RASSF1
8.55e-33FFCP PHASE1:Hg19::chr3:50378235..50378286,-#_8fe161314e880908df1706a2b5c7906dp2@RASSF1
1.14e-32FFCP PHASE1:Hg19::chr4:103747996..103748022,-#_0c4592d8cb8da334bb74468b2f9b75d7p4@UBE2D3
1.14e-32FFCP PHASE2:Hg19::chr4:103747996..103748022,-#_0c4592d8cb8da334bb74468b2f9b75d7p4@UBE2D3
1.35e-32FFCP PHASE1:Mm9::chr11:68834407..68834410,+#_2b723abca78ecac6585175ee4faafc93p@chr11:68834407..68834410, +
1.35e-32FFCP PHASE2:Mm9::chr11:68834407..68834410,+#_2b723abca78ecac6585175ee4faafc93p@chr11:68834407..68834410, +