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CL:0000047

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Name:neuronal stem cell
Namespace:FANTOM
Definition:"Neural stem cell is characterized as an undifferentiated cell that originates from the neuroectoderm and has the capacity both to perpetually self-renew without differentiating and to generate multiple types of lineage-restricted progenitors." [GOC:tfm, http://en.wikipedia.org/wiki/Neural_stem_cell, MESH:D058953, PMID:15247488]
Xrefs:
links:

BTO:0002881

FMA:86684
Synonyms: "neural stem cell" EXACT []
"NSC" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000048(multi fate stem cell),CL:0002319(neural cell)
develops_from:CL:0000133(neurectodermal cell)
part_of:UBERON:0001017(central nervous system)



Children


is a:CL:0000031 (neuroblast)
derives from:FF:0000120 (human neural stem cell sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000047 (neuronal stem cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
4.33e-86FFCP PHASE1:Hg19::chr12:86727911..86727925,-#_5694c65be0e63fe2317cda232095142ep@chr12:86727911..86727925, -
4.33e-86FFCP PHASE2:Hg19::chr12:86727911..86727925,-#_5694c65be0e63fe2317cda232095142ep@chr12:86727911..86727925, -
4.74e-79FFCP PHASE1:Hg19::chr9:100199938..100199951,-#_9b01687514c12af442aadfe29e56ded5p@chr9:100199938..100199951, -
4.74e-79FFCP PHASE1:Hg19::chr9:76707423..76707428,+#_9b01687514c12af442aadfe29e56ded5p@chr9:76707423..76707428, +
4.74e-79FFCP PHASE2:Hg19::chr9:100199938..100199951,-#_9b01687514c12af442aadfe29e56ded5-, p@chr9:100199938..100199951
4.74e-79FFCP PHASE2:Hg19::chr9:76707423..76707428,+#_9b01687514c12af442aadfe29e56ded5p@chr9:76707423..76707428, +
3.11e-74FFCP PHASE2:Hg19::chr8:494169..494176,+#_0fe4ae294ffafb473460bef2c47daefcp@chr8:494169..494176, +
3.11e-74FFCP PHASE2:Hg19::chr12:23738971..23738975,+#_0fe4ae294ffafb473460bef2c47daefcp@chr12:23738971..23738975, +
3.11e-74FFCP PHASE1:Hg19::chr7:89853761..89853768,+#_0fe4ae294ffafb473460bef2c47daefcp@chr7:89853761..89853768, +
3.11e-74FFCP PHASE1:Hg19::chr7:93269596..93269602,+#_0fe4ae294ffafb473460bef2c47daefc+, p@chr7:93269596..93269602
3.11e-74FFCP PHASE1:Hg19::chr3:162430587..162430591,+#_0fe4ae294ffafb473460bef2c47daefcp@chr3:162430587..162430591, +
3.11e-74FFCP PHASE1:Hg19::chr6:121759714..121759721,+#_0fe4ae294ffafb473460bef2c47daefcp@chr6:121759714..121759721, +
3.11e-74FFCP PHASE1:Hg19::chr6:18759117..18759122,-#_0fe4ae294ffafb473460bef2c47daefcp@chr6:18759117..18759122, -
3.11e-74FFCP PHASE2:Hg19::chr6:121759714..121759721,+#_0fe4ae294ffafb473460bef2c47daefcp@chr6:121759714..121759721, +
3.11e-74FFCP PHASE2:Hg19::chr6:18759117..18759122,-#_0fe4ae294ffafb473460bef2c47daefcp@chr6:18759117..18759122, -
3.11e-74FFCP PHASE1:Hg19::chr8:494169..494176,+#_0fe4ae294ffafb473460bef2c47daefcp@chr8:494169..494176, +
3.11e-74FFCP PHASE2:Hg19::chr3:162430587..162430591,+#_0fe4ae294ffafb473460bef2c47daefcp@chr3:162430587..162430591, +
3.11e-74FFCP PHASE2:Hg19::chr7:89853761..89853768,+#_0fe4ae294ffafb473460bef2c47daefcp@chr7:89853761..89853768, +
3.11e-74FFCP PHASE2:Hg19::chr1:178235815..178235824,-#_0fe4ae294ffafb473460bef2c47daefcp@chr1:178235815..178235824, -
3.11e-74FFCP PHASE2:Hg19::chr7:93269596..93269602,+#_0fe4ae294ffafb473460bef2c47daefcp@chr7:93269596..93269602, +
3.11e-74FFCP PHASE1:Hg19::chr10:63305248..63305260,-#_0fe4ae294ffafb473460bef2c47daefcp@chr10:63305248..63305260, -
3.11e-74FFCP PHASE1:Hg19::chr10:74804784..74804793,-#_0fe4ae294ffafb473460bef2c47daefcp@chr10:74804784..74804793, -
3.11e-74FFCP PHASE1:Hg19::chr12:23738971..23738975,+#_0fe4ae294ffafb473460bef2c47daefcp@chr12:23738971..23738975, +
3.11e-74FFCP PHASE1:Hg19::chr1:178235815..178235824,-#_0fe4ae294ffafb473460bef2c47daefcp@chr1:178235815..178235824, -
3.11e-74FFCP PHASE2:Hg19::chr10:63305248..63305260,-#_0fe4ae294ffafb473460bef2c47daefc-, p@chr10:63305248..63305260
3.11e-74FFCP PHASE2:Hg19::chr10:74804784..74804793,-#_0fe4ae294ffafb473460bef2c47daefcp@chr10:74804784..74804793, -
2.87e-71FFCP PHASE2:Hg19::chr1:33231268..33231284,+#_b6e96031b2ffb2ed36f92a7f84babd7fp20@KIAA1522
2.87e-71FFCP PHASE1:Hg19::chr1:33231268..33231284,+#_b6e96031b2ffb2ed36f92a7f84babd7fp20@KIAA1522
2.2e-70FFCP PHASE1:Mm9::chr8:125944624..125944663,+#_73a69d768287c47c29653b27ae7ec19bp@chr8:125944624..125944663, +
2.2e-70FFCP PHASE2:Mm9::chr8:125944624..125944663,+#_73a69d768287c47c29653b27ae7ec19bp@chr8:125944624..125944663, +
1.41e-68FFCP PHASE1:Hg19::chr7:137030541..137030575,-#_de949a643fb51487a5f76a8e86f382aap@chr7:137030541..137030575, -
1.41e-68FFCP PHASE2:Hg19::chr7:137030541..137030575,-#_de949a643fb51487a5f76a8e86f382aap@chr7:137030541..137030575, -
2.46e-68FFCP PHASE1:Hg19::chr17:76266195..76266208,-#_15b2727f9d999c0cc6a1611ef6d2370cp@chr17:76266195..76266208, -
2.46e-68FFCP PHASE2:Hg19::chr17:76266195..76266208,-#_15b2727f9d999c0cc6a1611ef6d2370cp@chr17:76266195..76266208, -
7.15e-66FFCP PHASE2:Hg19::chrX:91359754..91359757,-#_8860963d02cc21928a5d45d71f461661p2@ENST00000540909, p2@uc004efp.1
7.15e-66FFCP PHASE1:Hg19::chrX:91359754..91359757,-#_8860963d02cc21928a5d45d71f461661p2@ENST00000540909, p2@uc004efp.1
1.0e-65FFCP PHASE2:Hg19::chr3:38289177..38289184,+#_a3ee4aaad50f1221b7078bb39f7050fcp@chr3:38289177..38289184, +
1.0e-65FFCP PHASE1:Hg19::chr3:38289177..38289184,+#_a3ee4aaad50f1221b7078bb39f7050fcp@chr3:38289177..38289184, +
4.4e-62FFCP PHASE1:Hg19::chr1:142537912..142537938,-#_e8e28732d38f1c59865d9413f49e11d0p@chr1:142537912..142537938, -
4.4e-62FFCP PHASE1:Hg19::chr20:20472232..20472244,-#_e8e28732d38f1c59865d9413f49e11d0p@chr20:20472232..20472244, -
4.4e-62FFCP PHASE2:Hg19::chr1:142537912..142537938,-#_e8e28732d38f1c59865d9413f49e11d0p@chr1:142537912..142537938, -
4.4e-62FFCP PHASE2:Hg19::chr20:20472232..20472244,-#_e8e28732d38f1c59865d9413f49e11d0p@chr20:20472232..20472244, -
4.99e-62FFCP PHASE2:Hg19::chr2:104496621..104496635,-#_b599d0aed75757bd60b683f9983d5326p1@ENST00000455716
4.99e-62FFCP PHASE1:Hg19::chr2:104496621..104496635,-#_b599d0aed75757bd60b683f9983d5326p1@ENST00000455716
2.25e-61FFCP PHASE2:Hg19::chr5:135540733..135540788,-#_5245a1ec3e36d094dfee72602e301cb0p@chr5:135540733..135540788, -
2.25e-61FFCP PHASE1:Hg19::chr5:135540733..135540788,-#_5245a1ec3e36d094dfee72602e301cb0p@chr5:135540733..135540788, -
1.11e-58FFCP PHASE2:Mm9::chr7:109167666..109167667,+#_dc851c3cc86c0372ad56686e7f321e20p@chr7:109167666..109167667, +
1.11e-58FFCP PHASE1:Mm9::chr7:109167666..109167667,+#_dc851c3cc86c0372ad56686e7f321e20p@chr7:109167666..109167667, +
1.97e-58FFCP PHASE2:Hg19::chr21:33976809..33976828,-#_4ab225861a104b3242e19a6b528186e1p9@C21orf59
1.97e-58FFCP PHASE1:Hg19::chr21:33976809..33976828,-#_4ab225861a104b3242e19a6b528186e1p9@C21orf59
5.77e-57FFCP PHASE1:Hg19::chr7:23146271..23146285,+#_28b60dbf5b6a196a59c10e56f82ec1b3p4@KLHL7
5.77e-57FFCP PHASE2:Hg19::chr7:23146271..23146285,+#_28b60dbf5b6a196a59c10e56f82ec1b3p4@KLHL7
5.95e-57FFCP PHASE2:Hg19::chr6:88877062..88877073,-#_ff2c066a000af62ef1d3ab1212dd2f2bp3@BC037581
5.95e-57FFCP PHASE1:Hg19::chr6:88877062..88877073,-#_ff2c066a000af62ef1d3ab1212dd2f2bp3@BC037581
9.15e-57FFCP PHASE1:Hg19::chr1:142537706..142537723,-#_dd4dc1de5ebf75cd9e4298b830bce8aap@chr1:142537706..142537723, -
9.15e-57FFCP PHASE2:Hg19::chr1:142537706..142537723,-#_dd4dc1de5ebf75cd9e4298b830bce8aap@chr1:142537706..142537723, -
1.63e-56FFCP PHASE2:Hg19::chr17:37763867..37763873,-#_cc3a349665c6d5e6e9adbc908a6ee347p@chr17:37763867..37763873, -
1.63e-56FFCP PHASE1:Hg19::chr17:37763867..37763873,-#_cc3a349665c6d5e6e9adbc908a6ee347p@chr17:37763867..37763873, -
2.85e-56FFCP PHASE1:Hg19::chr11:30605486..30605499,-#_d3302a323805fd0de0c22782adacf9bap@chr11:30605486..30605499, -
2.85e-56FFCP PHASE2:Hg19::chr11:30605486..30605499,-#_d3302a323805fd0de0c22782adacf9bap@chr11:30605486..30605499, -
4.57e-56FFCP PHASE1:Hg19::chr1:232254205..232254216,+#_c54670b23ee0d2b7accb3f19251de48bp@chr1:232254205..232254216, +
4.57e-56FFCP PHASE2:Hg19::chr7:125557914..125557920,+#_c54670b23ee0d2b7accb3f19251de48bp1@ENST00000411856
4.57e-56FFCP PHASE1:Hg19::chr2:210164412..210164415,+#_c54670b23ee0d2b7accb3f19251de48bp@chr2:210164412..210164415, +
4.57e-56FFCP PHASE1:Hg19::chr3:65939393..65939412,+#_c54670b23ee0d2b7accb3f19251de48bp@chr3:65939393..65939412, +
4.57e-56FFCP PHASE1:Hg19::chr4:113571661..113571692,-#_c54670b23ee0d2b7accb3f19251de48bp1@ENST00000510655
4.57e-56FFCP PHASE1:Hg19::chr4:187163434..187163439,+#_c54670b23ee0d2b7accb3f19251de48bp@chr4:187163434..187163439, +
4.57e-56FFCP PHASE1:Hg19::chr7:125557914..125557920,+#_c54670b23ee0d2b7accb3f19251de48bp1@ENST00000411856
4.57e-56FFCP PHASE2:Hg19::chr1:232254205..232254216,+#_c54670b23ee0d2b7accb3f19251de48bp@chr1:232254205..232254216, +
4.57e-56FFCP PHASE2:Hg19::chr4:187163434..187163439,+#_c54670b23ee0d2b7accb3f19251de48bp@chr4:187163434..187163439, +
4.57e-56FFCP PHASE2:Hg19::chr3:65939393..65939412,+#_c54670b23ee0d2b7accb3f19251de48bp@chr3:65939393..65939412, +
4.57e-56FFCP PHASE2:Hg19::chr4:113571661..113571692,-#_c54670b23ee0d2b7accb3f19251de48bp1@ENST00000510655
4.57e-56FFCP PHASE2:Hg19::chr2:210164412..210164415,+#_c54670b23ee0d2b7accb3f19251de48bp@chr2:210164412..210164415, +
5.05e-56FFCP PHASE2:Hg19::chr2:197791691..197791702,-#_7c662ded092fff9bc23655780ce3d16fp8@PGAP1
5.05e-56FFCP PHASE1:Hg19::chr2:197791691..197791702,-#_7c662ded092fff9bc23655780ce3d16fp8@PGAP1
5.52e-56FFCP PHASE1:Hg19::chr13:93868779..93868791,+#_6b88c2382bf2fda0e56e296b1827bdfep@chr13:93868779..93868791, +
5.52e-56FFCP PHASE1:Hg19::chr22:27038766..27038806,-#_6b88c2382bf2fda0e56e296b1827bdfep@chr22:27038766..27038806, -
5.52e-56FFCP PHASE2:Hg19::chr13:93868779..93868791,+#_6b88c2382bf2fda0e56e296b1827bdfep@chr13:93868779..93868791, +
5.52e-56FFCP PHASE2:Hg19::chr22:27038766..27038806,-#_6b88c2382bf2fda0e56e296b1827bdfep@chr22:27038766..27038806, -
6.66e-56FFCP PHASE1:Hg19::chr6:132234089..132234094,+#_b18196984334497e3b448f0e26fcd29ep@chr6:132234089..132234094, +
6.66e-56FFCP PHASE2:Hg19::chr6:132234089..132234094,+#_b18196984334497e3b448f0e26fcd29ep@chr6:132234089..132234094, +
8.04e-56FFCP PHASE2:Hg19::chrX:16141567..16141572,+#_bf0379266b3830f55e776cdc84996230p4@GRPR
8.04e-56FFCP PHASE2:Hg19::chr13:54688155..54688160,-#_bf0379266b3830f55e776cdc84996230p@chr13:54688155..54688160, -
8.04e-56FFCP PHASE1:Hg19::chr13:54688155..54688160,-#_bf0379266b3830f55e776cdc84996230p@chr13:54688155..54688160, -
8.04e-56FFCP PHASE1:Hg19::chrX:16141567..16141572,+#_bf0379266b3830f55e776cdc84996230p4@GRPR
1.12e-55FFCP PHASE2:Hg19::chr6:98264504..98264513,+#_498d3c25af995228e46c138d50aa78ecp@chr6:98264504..98264513, +
1.12e-55FFCP PHASE1:Hg19::chr6:98264504..98264513,+#_498d3c25af995228e46c138d50aa78ecp@chr6:98264504..98264513, +
1.99e-55FFCP PHASE1:Hg19::chr5:146257992..146258003,-#_3c440aa684f8f36775deb8c750eb50b1p18@PPP2R2B
1.99e-55FFCP PHASE2:Hg19::chr5:146257992..146258003,-#_3c440aa684f8f36775deb8c750eb50b1p18@PPP2R2B
3.23e-55FFCP PHASE1:Hg19::chr8:39759861..39759881,+#_74c46c59d01479efeb567939d6cfcd51p3@IDO1
3.23e-55FFCP PHASE2:Hg19::chr8:39759861..39759881,+#_74c46c59d01479efeb567939d6cfcd51p3@IDO1
8.29e-55FFCP PHASE2:Mm9::chr14:26427427..26427439,+#_4e98a3d58c5fe8e40c038beabcb95cb3p22@Zmiz1
8.29e-55FFCP PHASE1:Mm9::chr14:26427427..26427439,+#_4e98a3d58c5fe8e40c038beabcb95cb3p22@Zmiz1
2.41e-54FFCP PHASE1:Mm9::chr13:9279895..9279899,+#_797ddd90e2b92a2fb2ae060998f709abp@chr13:9279895..9279899, +
2.41e-54FFCP PHASE2:Mm9::chr13:9279895..9279899,+#_797ddd90e2b92a2fb2ae060998f709abp@chr13:9279895..9279899, +
3.73e-51FFCP PHASE2:Hg19::chrX:110654147..110654194,-#_2024da4ed788d3a0ad0c35151b59af43p4@DCX
3.73e-51FFCP PHASE1:Hg19::chrX:110654147..110654194,-#_2024da4ed788d3a0ad0c35151b59af43p4@DCX
1.31e-50FFCP PHASE1:Mm9::chr8:125944694..125944740,+#_e1e4a0b048fe46695dc0b71b14fad239+, p@chr8:125944694..125944740
1.31e-50FFCP PHASE2:Mm9::chr8:125944694..125944740,+#_e1e4a0b048fe46695dc0b71b14fad239p@chr8:125944694..125944740, +
1.38e-50FFCP PHASE1:Mm9::chr3:55849731..55849735,-#_dec3f1c97a68a95798ef081f1f8885a1p@chr3:55849731..55849735, -
1.38e-50FFCP PHASE2:Mm9::chr3:55849731..55849735,-#_dec3f1c97a68a95798ef081f1f8885a1p@chr3:55849731..55849735, -