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CL:0000540

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Name:neuron
Namespace:FANTOM
Definition:"The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." [MESH:A.08.663, MESH:D009474]
Xrefs:
links:

BTO:0000938
FBbt:00005106
FMA:54527

WBbt:0003679
Synonyms: "nerve cell" EXACT []
Comments:These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma.


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000393(electrically responsive cell),CL:0000404(electrically signaling cell),CL:0002319(neural cell)
develops_from:CL:0000031(neuroblast)



Children


is a:CL:0000107 (autonomic neuron),CL:0000526 (afferent neuron),CL:2000029 (central nervous system neuron)
derives from:FF:0000203 (mouse neuron samples),FF:0000348 (human neuron samples),FF:0200005 (iPS differentiation to neuron sample),FF:0200030 (neurons - spiral ganglion sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000540 (neuron), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.83e-98FFCP PHASE1:Hg19::chr10:74804784..74804793,-#_b43b16b79016f9f84baa2463c7502ba1p@chr10:74804784..74804793, -
1.83e-98FFCP PHASE1:Hg19::chr12:23738971..23738975,+#_b43b16b79016f9f84baa2463c7502ba1p@chr12:23738971..23738975, +
1.83e-98FFCP PHASE1:Hg19::chr1:178235815..178235824,-#_b43b16b79016f9f84baa2463c7502ba1p@chr1:178235815..178235824, -
1.83e-98FFCP PHASE1:Hg19::chr3:162430587..162430591,+#_b43b16b79016f9f84baa2463c7502ba1p@chr3:162430587..162430591, +
1.83e-98FFCP PHASE1:Hg19::chr6:121759714..121759721,+#_b43b16b79016f9f84baa2463c7502ba1p@chr6:121759714..121759721, +
1.83e-98FFCP PHASE2:Hg19::chr12:23738971..23738975,+#_b43b16b79016f9f84baa2463c7502ba1p@chr12:23738971..23738975, +
1.83e-98FFCP PHASE1:Hg19::chr8:494169..494176,+#_b43b16b79016f9f84baa2463c7502ba1p@chr8:494169..494176, +
1.83e-98FFCP PHASE2:Hg19::chr3:162430587..162430591,+#_b43b16b79016f9f84baa2463c7502ba1p@chr3:162430587..162430591, +
1.83e-98FFCP PHASE2:Hg19::chr6:121759714..121759721,+#_b43b16b79016f9f84baa2463c7502ba1p@chr6:121759714..121759721, +
1.83e-98FFCP PHASE1:Hg19::chr7:89853761..89853768,+#_b43b16b79016f9f84baa2463c7502ba1p@chr7:89853761..89853768, +
1.83e-98FFCP PHASE1:Hg19::chr7:93269596..93269602,+#_b43b16b79016f9f84baa2463c7502ba1+, p@chr7:93269596..93269602
1.83e-98FFCP PHASE2:Hg19::chr7:89853761..89853768,+#_b43b16b79016f9f84baa2463c7502ba1p@chr7:89853761..89853768, +
1.83e-98FFCP PHASE2:Hg19::chr1:178235815..178235824,-#_b43b16b79016f9f84baa2463c7502ba1p@chr1:178235815..178235824, -
1.83e-98FFCP PHASE2:Hg19::chr7:93269596..93269602,+#_b43b16b79016f9f84baa2463c7502ba1p@chr7:93269596..93269602, +
1.83e-98FFCP PHASE2:Hg19::chr8:494169..494176,+#_b43b16b79016f9f84baa2463c7502ba1p@chr8:494169..494176, +
1.83e-98FFCP PHASE2:Hg19::chr10:74804784..74804793,-#_b43b16b79016f9f84baa2463c7502ba1p@chr10:74804784..74804793, -
6.82e-78FFCP PHASE1:Hg19::chr21:33976809..33976828,-#_25eb8c592e051ad155c5763770ecde53p9@C21orf59
6.82e-78FFCP PHASE2:Hg19::chr21:33976809..33976828,-#_25eb8c592e051ad155c5763770ecde53p9@C21orf59
2.58e-74FFCP PHASE2:Hg19::chr1:232254205..232254216,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr1:232254205..232254216, +
2.58e-74FFCP PHASE2:Hg19::chr3:65939393..65939412,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr3:65939393..65939412, +
2.58e-74FFCP PHASE1:Hg19::chr7:125557914..125557920,+#_dd4d1e54ee46d847ec8e5243205b3e7cp1@ENST00000411856
2.58e-74FFCP PHASE2:Hg19::chr2:210164412..210164415,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr2:210164412..210164415, +
2.58e-74FFCP PHASE2:Hg19::chr7:125557914..125557920,+#_dd4d1e54ee46d847ec8e5243205b3e7cp1@ENST00000411856
2.58e-74FFCP PHASE1:Hg19::chr1:232254205..232254216,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr1:232254205..232254216, +
2.58e-74FFCP PHASE1:Hg19::chr2:210164412..210164415,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr2:210164412..210164415, +
2.58e-74FFCP PHASE1:Hg19::chr3:65939393..65939412,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr3:65939393..65939412, +
2.58e-74FFCP PHASE1:Hg19::chr4:113571661..113571692,-#_dd4d1e54ee46d847ec8e5243205b3e7cp1@ENST00000510655
2.58e-74FFCP PHASE1:Hg19::chr4:187163434..187163439,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr4:187163434..187163439, +
2.58e-74FFCP PHASE2:Hg19::chr4:113571661..113571692,-#_dd4d1e54ee46d847ec8e5243205b3e7cp1@ENST00000510655
2.58e-74FFCP PHASE2:Hg19::chr4:187163434..187163439,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr4:187163434..187163439, +
3.31e-74FFCP PHASE2:Hg19::chr13:93868779..93868791,+#_0220c50bfd359f45e01544cc140f0aedp@chr13:93868779..93868791, +
3.31e-74FFCP PHASE1:Hg19::chr13:93868779..93868791,+#_0220c50bfd359f45e01544cc140f0aedp@chr13:93868779..93868791, +
4.26e-74FFCP PHASE1:Hg19::chr6:132234089..132234094,+#_757e6f4fb85178a524f2da1b4664e388p@chr6:132234089..132234094, +
4.26e-74FFCP PHASE2:Hg19::chr6:132234089..132234094,+#_757e6f4fb85178a524f2da1b4664e388p@chr6:132234089..132234094, +
5.47e-74FFCP PHASE1:Hg19::chr13:54688155..54688160,-#_c4d253404be23a1414107cb510b76a14p@chr13:54688155..54688160, -
5.47e-74FFCP PHASE1:Hg19::chrX:16141567..16141572,+#_c4d253404be23a1414107cb510b76a14p4@GRPR
5.47e-74FFCP PHASE2:Hg19::chrX:16141567..16141572,+#_c4d253404be23a1414107cb510b76a14p4@GRPR
5.47e-74FFCP PHASE2:Hg19::chr13:54688155..54688160,-#_c4d253404be23a1414107cb510b76a14p@chr13:54688155..54688160, -
2.2e-70FFCP PHASE1:Mm9::chr8:125944624..125944663,+#_013290c312f0c6e759a66c1dc0050a98p@chr8:125944624..125944663, +
2.2e-70FFCP PHASE2:Mm9::chr8:125944624..125944663,+#_013290c312f0c6e759a66c1dc0050a98p@chr8:125944624..125944663, +
2.83e-66FFCP PHASE2:Hg19::chr13:51745257..51745261,+#_dfb0d8497f710bc80eccfe742c38d820p@chr13:51745257..51745261, +
2.83e-66FFCP PHASE2:Hg19::chr4:150954096..150954098,+#_dfb0d8497f710bc80eccfe742c38d820p@chr4:150954096..150954098, +
2.83e-66FFCP PHASE2:Hg19::chr4:188918405..188918406,+#_dfb0d8497f710bc80eccfe742c38d820p@chr4:188918405..188918406, +
2.83e-66FFCP PHASE1:Hg19::chr13:51745257..51745261,+#_dfb0d8497f710bc80eccfe742c38d820p@chr13:51745257..51745261, +
2.83e-66FFCP PHASE1:Hg19::chr15:53409038..53409040,+#_dfb0d8497f710bc80eccfe742c38d820p@chr15:53409038..53409040, +
2.83e-66FFCP PHASE1:Hg19::chr19:33542309..33542310,+#_dfb0d8497f710bc80eccfe742c38d820p1@ENST00000463585
2.83e-66FFCP PHASE1:Hg19::chr20:31396411..31396416,+#_dfb0d8497f710bc80eccfe742c38d820p15@DNMT3B
2.83e-66FFCP PHASE1:Hg19::chr4:150954096..150954098,+#_dfb0d8497f710bc80eccfe742c38d820p@chr4:150954096..150954098, +
2.83e-66FFCP PHASE1:Hg19::chr4:188918405..188918406,+#_dfb0d8497f710bc80eccfe742c38d820p@chr4:188918405..188918406, +
2.83e-66FFCP PHASE2:Hg19::chr15:53409038..53409040,+#_dfb0d8497f710bc80eccfe742c38d820p@chr15:53409038..53409040, +
2.83e-66FFCP PHASE2:Hg19::chr20:31396411..31396416,+#_dfb0d8497f710bc80eccfe742c38d820p15@DNMT3B
2.83e-66FFCP PHASE2:Hg19::chrY:28817276..28817283,-#_dfb0d8497f710bc80eccfe742c38d820p@chrY:28817276..28817283, -
2.83e-66FFCP PHASE2:Hg19::chr19:33542309..33542310,+#_dfb0d8497f710bc80eccfe742c38d820p1@ENST00000463585
2.83e-66FFCP PHASE1:Hg19::chrY:28817276..28817283,-#_dfb0d8497f710bc80eccfe742c38d820p@chrY:28817276..28817283, -
8.15e-60FFCP PHASE1:Hg19::chr9:100199938..100199951,-#_d6960ea3c2e951d0a1437545e34adf20p@chr9:100199938..100199951, -
8.15e-60FFCP PHASE1:Hg19::chr9:12948720..12948724,+#_d6960ea3c2e951d0a1437545e34adf20p@chr9:12948720..12948724, +
8.15e-60FFCP PHASE1:Hg19::chr9:76707423..76707428,+#_d6960ea3c2e951d0a1437545e34adf20p@chr9:76707423..76707428, +
8.15e-60FFCP PHASE2:Hg19::chr9:100199938..100199951,-#_d6960ea3c2e951d0a1437545e34adf20-, p@chr9:100199938..100199951
8.15e-60FFCP PHASE2:Hg19::chr9:12948720..12948724,+#_d6960ea3c2e951d0a1437545e34adf20p@chr9:12948720..12948724, +
8.15e-60FFCP PHASE2:Hg19::chr9:76707423..76707428,+#_d6960ea3c2e951d0a1437545e34adf20p@chr9:76707423..76707428, +
9.96e-60FFCP PHASE1:Hg19::chr12:132280681..132280688,+#_8636ad4567f05f2ec0bf9c3d92822fbcp3@SFSWAP
9.96e-60FFCP PHASE2:Hg19::chr12:132280681..132280688,+#_8636ad4567f05f2ec0bf9c3d92822fbcp3@SFSWAP
1.22e-59FFCP PHASE2:Hg19::chr5:123833031..123833035,+#_40011443fc72fc231c2d5797db4b2275p@chr5:123833031..123833035, +
1.22e-59FFCP PHASE2:Hg19::chr4:111540901..111540905,+#_40011443fc72fc231c2d5797db4b2275p@chr4:111540901..111540905, +
1.22e-59FFCP PHASE1:Hg19::chr12:7942020..7942031,+#_40011443fc72fc231c2d5797db4b2275p2@NANOG
1.22e-59FFCP PHASE1:Hg19::chr1:114574998..114575000,+#_40011443fc72fc231c2d5797db4b2275p@chr1:114574998..114575000, +
1.22e-59FFCP PHASE1:Hg19::chr4:111540901..111540905,+#_40011443fc72fc231c2d5797db4b2275p@chr4:111540901..111540905, +
1.22e-59FFCP PHASE1:Hg19::chr5:123833031..123833035,+#_40011443fc72fc231c2d5797db4b2275p@chr5:123833031..123833035, +
1.22e-59FFCP PHASE2:Hg19::chr12:7942020..7942031,+#_40011443fc72fc231c2d5797db4b2275p2@NANOG
1.22e-59FFCP PHASE2:Hg19::chr1:114574998..114575000,+#_40011443fc72fc231c2d5797db4b2275p@chr1:114574998..114575000, +
1.49e-59FFCP PHASE2:Hg19::chr7:99986543..99986546,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr7:99986543..99986546, +
1.49e-59FFCP PHASE1:Hg19::chr7:99986543..99986546,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr7:99986543..99986546, +
1.49e-59FFCP PHASE1:Hg19::chr14:84428225..84428229,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr14:84428225..84428229, +
1.49e-59FFCP PHASE1:Hg19::chr2:76920664..76920667,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr2:76920664..76920667, +
1.49e-59FFCP PHASE2:Hg19::chr14:84428225..84428229,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr14:84428225..84428229, +
1.49e-59FFCP PHASE2:Hg19::chr2:76920664..76920667,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr2:76920664..76920667, +
1.82e-59FFCP PHASE2:Hg19::chr11:27657270..27657275,-#_994c7ae9b66f5f561be30b669ce81bdcp@chr11:27657270..27657275, -
1.82e-59FFCP PHASE1:Hg19::chr11:27657270..27657275,-#_994c7ae9b66f5f561be30b669ce81bdcp@chr11:27657270..27657275, -
2.72e-59FFCP PHASE1:Hg19::chr4:170861392..170861432,+#_b168c40ff4ebe04414d68858f68a7762p@chr4:170861392..170861432, +
2.72e-59FFCP PHASE2:Hg19::chr4:170861392..170861432,+#_b168c40ff4ebe04414d68858f68a7762p@chr4:170861392..170861432, +
5.43e-59FFCP PHASE1:Hg19::chr12:86727911..86727925,-#_fc5f2ea9e8dd4c4a04d5a6405a8d887bp@chr12:86727911..86727925, -
5.43e-59FFCP PHASE2:Hg19::chr12:86727911..86727925,-#_fc5f2ea9e8dd4c4a04d5a6405a8d887bp@chr12:86727911..86727925, -
1.11e-58FFCP PHASE2:Mm9::chr7:109167666..109167667,+#_f3deb365a9de8501507ff187c21132d8p@chr7:109167666..109167667, +
1.11e-58FFCP PHASE1:Mm9::chr7:109167666..109167667,+#_f3deb365a9de8501507ff187c21132d8p@chr7:109167666..109167667, +
1.36e-58FFCP PHASE1:Hg19::chr1:213164012..213164023,+#_8755f67963f838d761c9be50c3db7c13+, p@chr1:213164012..213164023
1.36e-58FFCP PHASE2:Hg19::chr1:213164012..213164023,+#_8755f67963f838d761c9be50c3db7c13p@chr1:213164012..213164023, +
2.28e-56FFCP PHASE2:Hg19::chr7:23146271..23146285,+#_50fa3ddc158365d5c85f5e0a65f01302p4@KLHL7
2.28e-56FFCP PHASE1:Hg19::chr7:23146271..23146285,+#_50fa3ddc158365d5c85f5e0a65f01302p4@KLHL7
8.29e-55FFCP PHASE2:Mm9::chr14:26427427..26427439,+#_ddb1ae2ae99151befee65a2728c0d3e8p22@Zmiz1
8.29e-55FFCP PHASE1:Mm9::chr14:26427427..26427439,+#_ddb1ae2ae99151befee65a2728c0d3e8p22@Zmiz1
2.41e-54FFCP PHASE1:Mm9::chr13:9279895..9279899,+#_bd77c32539fe14fdd54be7067ac2aef1p@chr13:9279895..9279899, +
2.41e-54FFCP PHASE2:Mm9::chr13:9279895..9279899,+#_bd77c32539fe14fdd54be7067ac2aef1p@chr13:9279895..9279899, +
7.68e-54FFCP PHASE2:Hg19::chr1:33231268..33231284,+#_6dbdc848ba943cfdb00730705d15b99cp20@KIAA1522
7.68e-54FFCP PHASE1:Hg19::chr1:33231268..33231284,+#_6dbdc848ba943cfdb00730705d15b99cp20@KIAA1522
4.63e-53FFCP PHASE1:Hg19::chr17:25672542..25672555,-#_df8b51abab190abf696661e461dd64dc-, p@chr17:25672542..25672555
4.63e-53FFCP PHASE2:Hg19::chr17:25672542..25672555,-#_df8b51abab190abf696661e461dd64dcp@chr17:25672542..25672555, -
1.37e-52FFCP PHASE1:Hg19::chr19:55823957..55823960,-#_b31ce4aeba25b775260b7eb87fea0accp@chr19:55823957..55823960, -
1.37e-52FFCP PHASE2:Hg19::chr19:55823957..55823960,-#_b31ce4aeba25b775260b7eb87fea0accp@chr19:55823957..55823960, -
1.31e-50FFCP PHASE1:Mm9::chr8:125944694..125944740,+#_61631972aebca939072fac7dbe6363ae+, p@chr8:125944694..125944740
1.31e-50FFCP PHASE2:Mm9::chr8:125944694..125944740,+#_61631972aebca939072fac7dbe6363aep@chr8:125944694..125944740, +


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