Personal tools

CL:0000540

From FANTOM5_SSTAR

Jump to: navigation, search
Name:neuron
Namespace:FANTOM
Definition:"The basic cellular unit of nervous tissue. Each neuron consists of a body, an axon, and dendrites. Their purpose is to receive, conduct, and transmit impulses in the nervous system." [MESH:A.08.663, MESH:D009474]
Xrefs:
links:

BTO:0000938
FBbt:00005106
FMA:54527

WBbt:0003679
Synonyms: "nerve cell" EXACT []
Comments:These cells are also reportedly CD4-negative and CD200-positive. They are also capable of producing CD40L and IFN-gamma.


Ontology association

Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.



link to ontology dataset


data

Parents

is_a:CL:0000393(electrically responsive cell),CL:0000404(electrically signaling cell),CL:0002319(neural cell)
develops_from:CL:0000031(neuroblast)



Children


is a:[[]] (autonomic neuron)[[]] (afferent neuron)[[]] (central nervous system neuron)
derives from:FF:0000203 (mouse neuron samples)FF:0000348 (human neuron samples)FF:0200005 (iPS differentiation to neuron sample)FF:0200030 (neurons - spiral ganglion sample)

Ontology Tree: Loaded from BioPortal


FF samples

It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens) Mouse (Mus musculus)



Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with CL:0000540 (neuron), sorted by p-values
Analyst: Hideya Kawaji



link to source dataset
human : data

mouse : data

P-valueFFCPShort description
1.83e-98FFCP_PHASE1:Hg19::chr10:74804784..74804793,-#_b43b16b79016f9f84baa2463c7502ba1p@chr10:74804784..74804793, -
1.83e-98FFCP_PHASE1:Hg19::chr12:23738971..23738975,+#_b43b16b79016f9f84baa2463c7502ba1p@chr12:23738971..23738975, +
1.83e-98FFCP_PHASE1:Hg19::chr1:178235815..178235824,-#_b43b16b79016f9f84baa2463c7502ba1p@chr1:178235815..178235824, -
1.83e-98FFCP_PHASE1:Hg19::chr3:162430587..162430591,+#_b43b16b79016f9f84baa2463c7502ba1p@chr3:162430587..162430591, +
1.83e-98FFCP_PHASE1:Hg19::chr6:121759714..121759721,+#_b43b16b79016f9f84baa2463c7502ba1p@chr6:121759714..121759721, +
1.83e-98FFCP_PHASE2:Hg19::chr12:23738971..23738975,+#_b43b16b79016f9f84baa2463c7502ba1p@chr12:23738971..23738975, +
1.83e-98FFCP_PHASE1:Hg19::chr8:494169..494176,+#_b43b16b79016f9f84baa2463c7502ba1p@chr8:494169..494176, +
1.83e-98FFCP_PHASE2:Hg19::chr3:162430587..162430591,+#_b43b16b79016f9f84baa2463c7502ba1p@chr3:162430587..162430591, +
1.83e-98FFCP_PHASE2:Hg19::chr6:121759714..121759721,+#_b43b16b79016f9f84baa2463c7502ba1p@chr6:121759714..121759721, +
1.83e-98FFCP_PHASE1:Hg19::chr7:89853761..89853768,+#_b43b16b79016f9f84baa2463c7502ba1p@chr7:89853761..89853768, +
1.83e-98FFCP_PHASE1:Hg19::chr7:93269596..93269602,+#_b43b16b79016f9f84baa2463c7502ba1+, p@chr7:93269596..93269602
1.83e-98FFCP_PHASE2:Hg19::chr7:89853761..89853768,+#_b43b16b79016f9f84baa2463c7502ba1p@chr7:89853761..89853768, +
1.83e-98FFCP_PHASE2:Hg19::chr1:178235815..178235824,-#_b43b16b79016f9f84baa2463c7502ba1p@chr1:178235815..178235824, -
1.83e-98FFCP_PHASE2:Hg19::chr7:93269596..93269602,+#_b43b16b79016f9f84baa2463c7502ba1p@chr7:93269596..93269602, +
1.83e-98FFCP_PHASE2:Hg19::chr8:494169..494176,+#_b43b16b79016f9f84baa2463c7502ba1p@chr8:494169..494176, +
1.83e-98FFCP_PHASE2:Hg19::chr10:74804784..74804793,-#_b43b16b79016f9f84baa2463c7502ba1p@chr10:74804784..74804793, -
6.82e-78FFCP_PHASE1:Hg19::chr21:33976809..33976828,-#_25eb8c592e051ad155c5763770ecde53p9@C21orf59
6.82e-78FFCP_PHASE2:Hg19::chr21:33976809..33976828,-#_25eb8c592e051ad155c5763770ecde53p9@C21orf59
2.58e-74FFCP_PHASE2:Hg19::chr1:232254205..232254216,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr1:232254205..232254216, +
2.58e-74FFCP_PHASE2:Hg19::chr3:65939393..65939412,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr3:65939393..65939412, +
2.58e-74FFCP_PHASE1:Hg19::chr7:125557914..125557920,+#_dd4d1e54ee46d847ec8e5243205b3e7cp1@ENST00000411856
2.58e-74FFCP_PHASE2:Hg19::chr2:210164412..210164415,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr2:210164412..210164415, +
2.58e-74FFCP_PHASE2:Hg19::chr7:125557914..125557920,+#_dd4d1e54ee46d847ec8e5243205b3e7cp1@ENST00000411856
2.58e-74FFCP_PHASE1:Hg19::chr1:232254205..232254216,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr1:232254205..232254216, +
2.58e-74FFCP_PHASE1:Hg19::chr2:210164412..210164415,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr2:210164412..210164415, +
2.58e-74FFCP_PHASE1:Hg19::chr3:65939393..65939412,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr3:65939393..65939412, +
2.58e-74FFCP_PHASE1:Hg19::chr4:113571661..113571692,-#_dd4d1e54ee46d847ec8e5243205b3e7cp1@ENST00000510655
2.58e-74FFCP_PHASE1:Hg19::chr4:187163434..187163439,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr4:187163434..187163439, +
2.58e-74FFCP_PHASE2:Hg19::chr4:113571661..113571692,-#_dd4d1e54ee46d847ec8e5243205b3e7cp1@ENST00000510655
2.58e-74FFCP_PHASE2:Hg19::chr4:187163434..187163439,+#_dd4d1e54ee46d847ec8e5243205b3e7cp@chr4:187163434..187163439, +
3.31e-74FFCP_PHASE2:Hg19::chr13:93868779..93868791,+#_0220c50bfd359f45e01544cc140f0aedp@chr13:93868779..93868791, +
3.31e-74FFCP_PHASE1:Hg19::chr13:93868779..93868791,+#_0220c50bfd359f45e01544cc140f0aedp@chr13:93868779..93868791, +
4.26e-74FFCP_PHASE1:Hg19::chr6:132234089..132234094,+#_757e6f4fb85178a524f2da1b4664e388p@chr6:132234089..132234094, +
4.26e-74FFCP_PHASE2:Hg19::chr6:132234089..132234094,+#_757e6f4fb85178a524f2da1b4664e388p@chr6:132234089..132234094, +
5.47e-74FFCP_PHASE1:Hg19::chr13:54688155..54688160,-#_c4d253404be23a1414107cb510b76a14p@chr13:54688155..54688160, -
5.47e-74FFCP_PHASE1:Hg19::chrX:16141567..16141572,+#_c4d253404be23a1414107cb510b76a14p4@GRPR
5.47e-74FFCP_PHASE2:Hg19::chrX:16141567..16141572,+#_c4d253404be23a1414107cb510b76a14p4@GRPR
5.47e-74FFCP_PHASE2:Hg19::chr13:54688155..54688160,-#_c4d253404be23a1414107cb510b76a14p@chr13:54688155..54688160, -
2.2e-70FFCP_PHASE1:Mm9::chr8:125944624..125944663,+#_013290c312f0c6e759a66c1dc0050a98p@chr8:125944624..125944663, +
2.2e-70FFCP_PHASE2:Mm9::chr8:125944624..125944663,+#_013290c312f0c6e759a66c1dc0050a98p@chr8:125944624..125944663, +
2.83e-66FFCP_PHASE2:Hg19::chr13:51745257..51745261,+#_dfb0d8497f710bc80eccfe742c38d820p@chr13:51745257..51745261, +
2.83e-66FFCP_PHASE2:Hg19::chr4:150954096..150954098,+#_dfb0d8497f710bc80eccfe742c38d820p@chr4:150954096..150954098, +
2.83e-66FFCP_PHASE2:Hg19::chr4:188918405..188918406,+#_dfb0d8497f710bc80eccfe742c38d820p@chr4:188918405..188918406, +
2.83e-66FFCP_PHASE1:Hg19::chr13:51745257..51745261,+#_dfb0d8497f710bc80eccfe742c38d820p@chr13:51745257..51745261, +
2.83e-66FFCP_PHASE1:Hg19::chr15:53409038..53409040,+#_dfb0d8497f710bc80eccfe742c38d820p@chr15:53409038..53409040, +
2.83e-66FFCP_PHASE1:Hg19::chr19:33542309..33542310,+#_dfb0d8497f710bc80eccfe742c38d820p1@ENST00000463585
2.83e-66FFCP_PHASE1:Hg19::chr20:31396411..31396416,+#_dfb0d8497f710bc80eccfe742c38d820p15@DNMT3B
2.83e-66FFCP_PHASE1:Hg19::chr4:150954096..150954098,+#_dfb0d8497f710bc80eccfe742c38d820p@chr4:150954096..150954098, +
2.83e-66FFCP_PHASE1:Hg19::chr4:188918405..188918406,+#_dfb0d8497f710bc80eccfe742c38d820p@chr4:188918405..188918406, +
2.83e-66FFCP_PHASE2:Hg19::chr15:53409038..53409040,+#_dfb0d8497f710bc80eccfe742c38d820p@chr15:53409038..53409040, +
2.83e-66FFCP_PHASE2:Hg19::chr20:31396411..31396416,+#_dfb0d8497f710bc80eccfe742c38d820p15@DNMT3B
2.83e-66FFCP_PHASE2:Hg19::chrY:28817276..28817283,-#_dfb0d8497f710bc80eccfe742c38d820p@chrY:28817276..28817283, -
2.83e-66FFCP_PHASE2:Hg19::chr19:33542309..33542310,+#_dfb0d8497f710bc80eccfe742c38d820p1@ENST00000463585
2.83e-66FFCP_PHASE1:Hg19::chrY:28817276..28817283,-#_dfb0d8497f710bc80eccfe742c38d820p@chrY:28817276..28817283, -
8.15e-60FFCP_PHASE1:Hg19::chr9:100199938..100199951,-#_d6960ea3c2e951d0a1437545e34adf20p@chr9:100199938..100199951, -
8.15e-60FFCP_PHASE1:Hg19::chr9:12948720..12948724,+#_d6960ea3c2e951d0a1437545e34adf20p@chr9:12948720..12948724, +
8.15e-60FFCP_PHASE1:Hg19::chr9:76707423..76707428,+#_d6960ea3c2e951d0a1437545e34adf20p@chr9:76707423..76707428, +
8.15e-60FFCP_PHASE2:Hg19::chr9:100199938..100199951,-#_d6960ea3c2e951d0a1437545e34adf20-, p@chr9:100199938..100199951
8.15e-60FFCP_PHASE2:Hg19::chr9:12948720..12948724,+#_d6960ea3c2e951d0a1437545e34adf20p@chr9:12948720..12948724, +
8.15e-60FFCP_PHASE2:Hg19::chr9:76707423..76707428,+#_d6960ea3c2e951d0a1437545e34adf20p@chr9:76707423..76707428, +
9.96e-60FFCP_PHASE1:Hg19::chr12:132280681..132280688,+#_8636ad4567f05f2ec0bf9c3d92822fbcp3@SFSWAP
9.96e-60FFCP_PHASE2:Hg19::chr12:132280681..132280688,+#_8636ad4567f05f2ec0bf9c3d92822fbcp3@SFSWAP
1.22e-59FFCP_PHASE2:Hg19::chr5:123833031..123833035,+#_40011443fc72fc231c2d5797db4b2275p@chr5:123833031..123833035, +
1.22e-59FFCP_PHASE2:Hg19::chr4:111540901..111540905,+#_40011443fc72fc231c2d5797db4b2275p@chr4:111540901..111540905, +
1.22e-59FFCP_PHASE1:Hg19::chr12:7942020..7942031,+#_40011443fc72fc231c2d5797db4b2275p2@NANOG
1.22e-59FFCP_PHASE1:Hg19::chr1:114574998..114575000,+#_40011443fc72fc231c2d5797db4b2275p@chr1:114574998..114575000, +
1.22e-59FFCP_PHASE1:Hg19::chr4:111540901..111540905,+#_40011443fc72fc231c2d5797db4b2275p@chr4:111540901..111540905, +
1.22e-59FFCP_PHASE1:Hg19::chr5:123833031..123833035,+#_40011443fc72fc231c2d5797db4b2275p@chr5:123833031..123833035, +
1.22e-59FFCP_PHASE2:Hg19::chr12:7942020..7942031,+#_40011443fc72fc231c2d5797db4b2275p2@NANOG
1.22e-59FFCP_PHASE2:Hg19::chr1:114574998..114575000,+#_40011443fc72fc231c2d5797db4b2275p@chr1:114574998..114575000, +
1.49e-59FFCP_PHASE2:Hg19::chr7:99986543..99986546,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr7:99986543..99986546, +
1.49e-59FFCP_PHASE1:Hg19::chr7:99986543..99986546,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr7:99986543..99986546, +
1.49e-59FFCP_PHASE1:Hg19::chr14:84428225..84428229,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr14:84428225..84428229, +
1.49e-59FFCP_PHASE1:Hg19::chr2:76920664..76920667,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr2:76920664..76920667, +
1.49e-59FFCP_PHASE2:Hg19::chr14:84428225..84428229,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr14:84428225..84428229, +
1.49e-59FFCP_PHASE2:Hg19::chr2:76920664..76920667,+#_fa53220fb5095fc9ab1b64e15aa2ed73p@chr2:76920664..76920667, +
1.82e-59FFCP_PHASE2:Hg19::chr11:27657270..27657275,-#_994c7ae9b66f5f561be30b669ce81bdcp@chr11:27657270..27657275, -
1.82e-59FFCP_PHASE1:Hg19::chr11:27657270..27657275,-#_994c7ae9b66f5f561be30b669ce81bdcp@chr11:27657270..27657275, -
2.72e-59FFCP_PHASE1:Hg19::chr4:170861392..170861432,+#_b168c40ff4ebe04414d68858f68a7762p@chr4:170861392..170861432, +
2.72e-59FFCP_PHASE2:Hg19::chr4:170861392..170861432,+#_b168c40ff4ebe04414d68858f68a7762p@chr4:170861392..170861432, +
5.43e-59FFCP_PHASE1:Hg19::chr12:86727911..86727925,-#_fc5f2ea9e8dd4c4a04d5a6405a8d887bp@chr12:86727911..86727925, -
5.43e-59FFCP_PHASE2:Hg19::chr12:86727911..86727925,-#_fc5f2ea9e8dd4c4a04d5a6405a8d887bp@chr12:86727911..86727925, -
1.11e-58FFCP_PHASE2:Mm9::chr7:109167666..109167667,+#_f3deb365a9de8501507ff187c21132d8p@chr7:109167666..109167667, +
1.11e-58FFCP_PHASE1:Mm9::chr7:109167666..109167667,+#_f3deb365a9de8501507ff187c21132d8p@chr7:109167666..109167667, +
1.36e-58FFCP_PHASE1:Hg19::chr1:213164012..213164023,+#_8755f67963f838d761c9be50c3db7c13+, p@chr1:213164012..213164023
1.36e-58FFCP_PHASE2:Hg19::chr1:213164012..213164023,+#_8755f67963f838d761c9be50c3db7c13p@chr1:213164012..213164023, +
2.28e-56FFCP_PHASE2:Hg19::chr7:23146271..23146285,+#_50fa3ddc158365d5c85f5e0a65f01302p4@KLHL7
2.28e-56FFCP_PHASE1:Hg19::chr7:23146271..23146285,+#_50fa3ddc158365d5c85f5e0a65f01302p4@KLHL7
8.29e-55FFCP_PHASE2:Mm9::chr14:26427427..26427439,+#_ddb1ae2ae99151befee65a2728c0d3e8p22@Zmiz1
8.29e-55FFCP_PHASE1:Mm9::chr14:26427427..26427439,+#_ddb1ae2ae99151befee65a2728c0d3e8p22@Zmiz1
2.41e-54FFCP_PHASE1:Mm9::chr13:9279895..9279899,+#_bd77c32539fe14fdd54be7067ac2aef1p@chr13:9279895..9279899, +
2.41e-54FFCP_PHASE2:Mm9::chr13:9279895..9279899,+#_bd77c32539fe14fdd54be7067ac2aef1p@chr13:9279895..9279899, +
7.68e-54FFCP_PHASE2:Hg19::chr1:33231268..33231284,+#_6dbdc848ba943cfdb00730705d15b99cp20@KIAA1522
7.68e-54FFCP_PHASE1:Hg19::chr1:33231268..33231284,+#_6dbdc848ba943cfdb00730705d15b99cp20@KIAA1522
4.63e-53FFCP_PHASE1:Hg19::chr17:25672542..25672555,-#_df8b51abab190abf696661e461dd64dc-, p@chr17:25672542..25672555
4.63e-53FFCP_PHASE2:Hg19::chr17:25672542..25672555,-#_df8b51abab190abf696661e461dd64dc-, p@chr17:25672542..25672555
1.37e-52FFCP_PHASE1:Hg19::chr19:55823957..55823960,-#_b31ce4aeba25b775260b7eb87fea0accp@chr19:55823957..55823960, -
1.37e-52FFCP_PHASE2:Hg19::chr19:55823957..55823960,-#_b31ce4aeba25b775260b7eb87fea0accp@chr19:55823957..55823960, -
1.31e-50FFCP_PHASE1:Mm9::chr8:125944694..125944740,+#_61631972aebca939072fac7dbe6363ae+, p@chr8:125944694..125944740
1.31e-50FFCP_PHASE2:Mm9::chr8:125944694..125944740,+#_61631972aebca939072fac7dbe6363aep@chr8:125944694..125944740, +