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CL:0000586

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Name:germ cell
Namespace:FANTOM
Definition:"The reproductive cell in multicellular organisms." [MESH:A.05.360.490]
Xrefs:
links:

BTO:0000535

WBbt:0006796


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000039(germ line cell)



Children


is a:FF:10590-108D5 (testicular germ cell embryonal carcinoma cell line:NEC8),FF:10591-108D6 (testicular germ cell embryonal carcinoma cell line:NEC14),FF:10593-108D8 (testicular germ cell embryonal carcinoma cell line:NEC15),FF:10786-110H3 (testicular germ cell embryonal carcinoma cell line:ITO-II)
derives from:FF:0101575 (choriocarcinoma cell line sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000586 (germ cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.99e-171FFCP PHASE2:Hg19::chr12:7863680..7863695,+#_8ae4d45355fedf86506427b46963f205p3@DPPA3
1.99e-171FFCP PHASE1:Hg19::chr12:7863680..7863695,+#_8ae4d45355fedf86506427b46963f205p3@DPPA3
5.52e-144FFCP PHASE2:Hg19::chr4:165953147..165953161,+#_c02dc85f93a6920b750b6a5e27b6d6c2p3@TRIM60
5.52e-144FFCP PHASE1:Hg19::chr4:165953147..165953161,+#_c02dc85f93a6920b750b6a5e27b6d6c2p3@TRIM60
9.03e-144FFCP PHASE2:Hg19::chr21:45681768..45681773,-#_b79e382e3c558f48f9fa9236ee7931e3p4@DNMT3L
9.03e-144FFCP PHASE1:Hg19::chr21:45681768..45681773,-#_b79e382e3c558f48f9fa9236ee7931e3p4@DNMT3L
6.94e-140FFCP PHASE2:Hg19::chr12:8983864..8983875,-#_2e0e310be3ba535b687e08c189d7fcdep2@A2ML1-AS1
6.94e-140FFCP PHASE1:Hg19::chr12:8983864..8983875,-#_2e0e310be3ba535b687e08c189d7fcdep2@A2ML1-AS1
1.01e-125FFCP PHASE2:Hg19::chr12:7864063..7864074,+#_79cc9d58324fe3d6dc73277cbbdad864p2@DPPA3
1.01e-125FFCP PHASE1:Hg19::chr12:7864063..7864074,+#_79cc9d58324fe3d6dc73277cbbdad864p2@DPPA3
5.61e-117FFCP PHASE2:Hg19::chr12:8983894..8983910,-#_37814177ceef353bcf86c4a54e7afe39p1@A2ML1-AS1
5.61e-117FFCP PHASE1:Hg19::chr12:8983894..8983910,-#_37814177ceef353bcf86c4a54e7afe39p1@A2ML1-AS1
7.13e-117FFCP PHASE1:Hg19::chr4:165953174..165953189,+#_63dd556e3b6450db2eb1605cace7783ap1@TRIM60
7.13e-117FFCP PHASE2:Hg19::chr4:165953174..165953189,+#_63dd556e3b6450db2eb1605cace7783ap1@TRIM60
9.06e-117FFCP PHASE1:Hg19::chr4:165953213..165953229,+#_90e0b67ac71a5a07a67dafd32f0cbaeep2@TRIM60
9.06e-117FFCP PHASE2:Hg19::chr4:165953213..165953229,+#_90e0b67ac71a5a07a67dafd32f0cbaeep2@TRIM60
1.15e-116FFCP PHASE2:Hg19::chr3:9895464..9895477,-#_3bfe9ce808c09155accf2133a7cbd923p@chr3:9895464..9895477, -
1.15e-116FFCP PHASE1:Hg19::chr3:9895464..9895477,-#_3bfe9ce808c09155accf2133a7cbd923p@chr3:9895464..9895477, -
3.15e-112FFCP PHASE2:Hg19::chr2:71755221..71755234,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:71755221..71755234, +
3.15e-112FFCP PHASE2:Hg19::chr19:46003056..46003067,+#_78a6719ef2869507f64c0c6334b796b0p11@PPM1N
3.15e-112FFCP PHASE1:Hg19::chr19:51883856..51883866,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:51883856..51883866, -
3.15e-112FFCP PHASE2:Hg19::chr19:51883879..51883908,-#_78a6719ef2869507f64c0c6334b796b0-, p@chr19:51883879..51883908
3.15e-112FFCP PHASE1:Hg19::chr6:73935150..73935162,-#_78a6719ef2869507f64c0c6334b796b0p3@KHDC1L
3.15e-112FFCP PHASE1:Hg19::chr2:65786044..65786055,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:65786044..65786055, +
3.15e-112FFCP PHASE1:Hg19::chr4:779349..779383,+#_78a6719ef2869507f64c0c6334b796b0p@chr4:779349..779383, +
3.15e-112FFCP PHASE2:Hg19::chr21:27478934..27478945,-#_78a6719ef2869507f64c0c6334b796b0p@chr21:27478934..27478945, -
3.15e-112FFCP PHASE2:Hg19::chr16:9069001..9069012,-#_78a6719ef2869507f64c0c6334b796b0p@chr16:9069001..9069012, -
3.15e-112FFCP PHASE2:Hg19::chr16:24506473..24506474,-#_78a6719ef2869507f64c0c6334b796b0p2@BX538205
3.15e-112FFCP PHASE1:Hg19::chr6:35511496..35511503,+#_78a6719ef2869507f64c0c6334b796b0p@chr6:35511496..35511503, +
3.15e-112FFCP PHASE2:Hg19::chr2:71755236..71755242,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:71755236..71755242, +
3.15e-112FFCP PHASE2:Hg19::chr11:107782394..107782402,+#_78a6719ef2869507f64c0c6334b796b0p@chr11:107782394..107782402, +
3.15e-112FFCP PHASE2:Hg19::chr6:35511496..35511503,+#_78a6719ef2869507f64c0c6334b796b0p@chr6:35511496..35511503, +
3.15e-112FFCP PHASE2:Hg19::chr12:32717031..32717041,+#_78a6719ef2869507f64c0c6334b796b0p@chr12:32717031..32717041, +
3.15e-112FFCP PHASE1:Hg19::chr19:51883879..51883908,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:51883879..51883908, -
3.15e-112FFCP PHASE1:Hg19::chr8:133637624..133637635,-#_78a6719ef2869507f64c0c6334b796b0p5@LRRC6
3.15e-112FFCP PHASE2:Hg19::chr19:51883915..51883934,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:51883915..51883934, -
3.15e-112FFCP PHASE1:Hg19::chr2:71755206..71755213,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:71755206..71755213, +
3.15e-112FFCP PHASE1:Hg19::chr19:40431284..40431296,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:40431284..40431296, -
3.15e-112FFCP PHASE2:Hg19::chr1:24239991..24240012,-#_78a6719ef2869507f64c0c6334b796b0p6@CNR2
3.15e-112FFCP PHASE2:Hg19::chr12:8045030..8045044,+#_78a6719ef2869507f64c0c6334b796b0p5@NANOGP1
3.15e-112FFCP PHASE1:Hg19::chr1:24239991..24240012,-#_78a6719ef2869507f64c0c6334b796b0p6@CNR2
3.15e-112FFCP PHASE2:Hg19::chr1:227034858..227034868,+#_78a6719ef2869507f64c0c6334b796b0+, p@chr1:227034858..227034868
3.15e-112FFCP PHASE2:Hg19::chr21:27478988..27478996,-#_78a6719ef2869507f64c0c6334b796b0p@chr21:27478988..27478996, -
3.15e-112FFCP PHASE2:Hg19::chr2:233989556..233989568,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:233989556..233989568, +
3.15e-112FFCP PHASE2:Hg19::chr1:92406327..92406341,+#_78a6719ef2869507f64c0c6334b796b0p@chr1:92406327..92406341, +
3.15e-112FFCP PHASE2:Hg19::chr19:40431284..40431296,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:40431284..40431296, -
3.15e-112FFCP PHASE2:Hg19::chr12:32717043..32717051,+#_78a6719ef2869507f64c0c6334b796b0p@chr12:32717043..32717051, +
3.15e-112FFCP PHASE2:Hg19::chr10:48320905..48320918,+#_78a6719ef2869507f64c0c6334b796b0p@chr10:48320905..48320918, +
3.15e-112FFCP PHASE1:Hg19::chr12:32717031..32717041,+#_78a6719ef2869507f64c0c6334b796b0p@chr12:32717031..32717041, +
3.15e-112FFCP PHASE1:Hg19::chr19:51883915..51883934,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:51883915..51883934, -
3.15e-112FFCP PHASE2:Hg19::chr8:133637624..133637635,-#_78a6719ef2869507f64c0c6334b796b0p5@LRRC6
3.15e-112FFCP PHASE1:Hg19::chr11:107782394..107782402,+#_78a6719ef2869507f64c0c6334b796b0p@chr11:107782394..107782402, +
3.15e-112FFCP PHASE1:Hg19::chr8:133637642..133637653,-#_78a6719ef2869507f64c0c6334b796b0p6@LRRC6
3.15e-112FFCP PHASE2:Hg19::chr4:779349..779383,+#_78a6719ef2869507f64c0c6334b796b0p@chr4:779349..779383, +
3.15e-112FFCP PHASE1:Hg19::chr2:233989556..233989568,+#_78a6719ef2869507f64c0c6334b796b0+, p@chr2:233989556..233989568
3.15e-112FFCP PHASE1:Hg19::chr2:71755221..71755234,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:71755221..71755234, +
3.15e-112FFCP PHASE1:Hg19::chr19:40431300..40431312,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:40431300..40431312, -
3.15e-112FFCP PHASE2:Hg19::chr7:2309320..2309348,-#_78a6719ef2869507f64c0c6334b796b0p@chr7:2309320..2309348, -
3.15e-112FFCP PHASE1:Hg19::chr19:46003056..46003067,+#_78a6719ef2869507f64c0c6334b796b0p11@PPM1N
3.15e-112FFCP PHASE1:Hg19::chr21:27478934..27478945,-#_78a6719ef2869507f64c0c6334b796b0p@chr21:27478934..27478945, -
3.15e-112FFCP PHASE1:Hg19::chr1:38709054..38709062,+#_78a6719ef2869507f64c0c6334b796b0p@chr1:38709054..38709062, +
3.15e-112FFCP PHASE1:Hg19::chr10:48320905..48320918,+#_78a6719ef2869507f64c0c6334b796b0p@chr10:48320905..48320918, +
3.15e-112FFCP PHASE1:Hg19::chr15:33905298..33905312,+#_78a6719ef2869507f64c0c6334b796b0p@chr15:33905298..33905312, +
3.15e-112FFCP PHASE1:Hg19::chr1:92406327..92406341,+#_78a6719ef2869507f64c0c6334b796b0p@chr1:92406327..92406341, +
3.15e-112FFCP PHASE2:Hg19::chr19:40431300..40431312,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:40431300..40431312, -
3.15e-112FFCP PHASE2:Hg19::chr2:65786044..65786055,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:65786044..65786055, +
3.15e-112FFCP PHASE2:Hg19::chr1:38709054..38709062,+#_78a6719ef2869507f64c0c6334b796b0p@chr1:38709054..38709062, +
3.15e-112FFCP PHASE1:Hg19::chr12:32717043..32717051,+#_78a6719ef2869507f64c0c6334b796b0p@chr12:32717043..32717051, +
3.15e-112FFCP PHASE2:Hg19::chr8:133637642..133637653,-#_78a6719ef2869507f64c0c6334b796b0p6@LRRC6
3.15e-112FFCP PHASE1:Hg19::chr1:227034858..227034868,+#_78a6719ef2869507f64c0c6334b796b0p@chr1:227034858..227034868, +
3.15e-112FFCP PHASE1:Hg19::chr7:2309320..2309348,-#_78a6719ef2869507f64c0c6334b796b0-, p@chr7:2309320..2309348
3.15e-112FFCP PHASE1:Hg19::chr12:8045030..8045044,+#_78a6719ef2869507f64c0c6334b796b0p5@NANOGP1
3.15e-112FFCP PHASE2:Hg19::chr15:33905298..33905312,+#_78a6719ef2869507f64c0c6334b796b0p@chr15:33905298..33905312, +
3.15e-112FFCP PHASE2:Hg19::chr2:71755206..71755213,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:71755206..71755213, +
3.15e-112FFCP PHASE1:Hg19::chr2:71755236..71755242,+#_78a6719ef2869507f64c0c6334b796b0p@chr2:71755236..71755242, +
3.15e-112FFCP PHASE2:Hg19::chr6:73935150..73935162,-#_78a6719ef2869507f64c0c6334b796b0p3@KHDC1L
3.15e-112FFCP PHASE1:Hg19::chr21:27478988..27478996,-#_78a6719ef2869507f64c0c6334b796b0p@chr21:27478988..27478996, -
3.15e-112FFCP PHASE2:Hg19::chr19:51883856..51883866,-#_78a6719ef2869507f64c0c6334b796b0p@chr19:51883856..51883866, -
3.15e-112FFCP PHASE1:Hg19::chr16:24506473..24506474,-#_78a6719ef2869507f64c0c6334b796b0p2@BX538205
3.15e-112FFCP PHASE2:Hg19::chr6:6032547..6032560,-#_78a6719ef2869507f64c0c6334b796b0p@chr6:6032547..6032560, -
3.15e-112FFCP PHASE1:Hg19::chr16:9069001..9069012,-#_78a6719ef2869507f64c0c6334b796b0p@chr16:9069001..9069012, -
3.15e-112FFCP PHASE1:Hg19::chr6:6032547..6032560,-#_78a6719ef2869507f64c0c6334b796b0p@chr6:6032547..6032560, -
3.67e-112FFCP PHASE1:Hg19::chr6:35511483..35511494,+#_5d4f0fb93fb57bd1f2f6e8fab806814ep@chr6:35511483..35511494, +
3.67e-112FFCP PHASE2:Hg19::chr6:35511483..35511494,+#_5d4f0fb93fb57bd1f2f6e8fab806814ep@chr6:35511483..35511494, +
1.28e-101FFCP PHASE1:Hg19::chr21:45681737..45681760,-#_5dccd732aaa30608db0ae1f321ad3954p2@DNMT3L
1.28e-101FFCP PHASE2:Hg19::chr21:45681737..45681760,-#_5dccd732aaa30608db0ae1f321ad3954p2@DNMT3L
4.29e-101FFCP PHASE1:Hg19::chr19:46002982..46002998,+#_bc1d1595aa129bc501951d9bac43b245p8@PPM1N
4.29e-101FFCP PHASE2:Hg19::chr19:46002982..46002998,+#_bc1d1595aa129bc501951d9bac43b245p8@PPM1N
7.2e-101FFCP PHASE2:Hg19::chr4:188963120..188963125,+#_089500564c7bbed0bfe9b311a26aacdep@chr4:188963120..188963125, +
7.2e-101FFCP PHASE1:Hg19::chr4:188963120..188963125,+#_089500564c7bbed0bfe9b311a26aacdep@chr4:188963120..188963125, +
5.5e-100FFCP PHASE2:Hg19::chr3:48519267..48519301,-#_fc16377490b198dfc3c44d8b2ad8e581p@chr3:48519267..48519301, -
5.5e-100FFCP PHASE1:Hg19::chr3:48519267..48519301,-#_fc16377490b198dfc3c44d8b2ad8e581p@chr3:48519267..48519301, -
1.18e-92FFCP PHASE2:Hg19::chr21:45681774..45681821,-#_1fc74e1da581fd0a537eb3a0e29e333bp1@DNMT3L
1.18e-92FFCP PHASE1:Hg19::chr21:45681774..45681821,-#_1fc74e1da581fd0a537eb3a0e29e333bp1@DNMT3L
3.52e-90FFCP PHASE1:Hg19::chr3:47297118..47297149,+#_1ac356bdc84f671f720008196132386bp@chr3:47297118..47297149, +
3.52e-90FFCP PHASE2:Hg19::chr19:42965112..42965160,+#_1ac356bdc84f671f720008196132386b+, p@chr19:42965112..42965160
3.52e-90FFCP PHASE2:Hg19::chr4:3931902..3931913,+#_1ac356bdc84f671f720008196132386bp@chr4:3931902..3931913, +
3.52e-90FFCP PHASE1:Hg19::chr1:27385778..27385789,+#_1ac356bdc84f671f720008196132386bp@chr1:27385778..27385789, +
3.52e-90FFCP PHASE2:Hg19::chr5:133764015..133764029,+#_1ac356bdc84f671f720008196132386bp@chr5:133764015..133764029, +
3.52e-90FFCP PHASE1:Hg19::chr5:140053152..140053174,-#_1ac356bdc84f671f720008196132386bp1@DND1