Personal tools

CL:0000790

From FANTOM5_SSTAR

Jump to: navigation, search
Name:immature alpha-beta T cell
Namespace:FANTOM
Definition:"An alpha-beta T cell that has an immature phenotype and has not completed T cell selection." [GOC:add, GOC:tfm, ISBN:0781735149]
Synonyms: "immature alpha-beta T lymphocyte" EXACT []
"immature alpha-beta T-cell" EXACT []
"immature alpha-beta T-lymphocyte" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000789(alpha-beta T cell),CL:0002420(immature T cell)



Children


is a:CL:0000809 (double-positive, alpha-beta thymocyte),CL:0000810 (CD4-positive, alpha-beta thymocyte),CL:0000914 (immature NK T cell)
develops from:CL:0000791 (mature alpha-beta T cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.




Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000790 (immature alpha-beta T cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
4.82e-125FFCP PHASE1:Hg19::chr5:35859622..35859626,+#_e6c960257014ec9f3b0f1ec3483b4685p@chr5:35859622..35859626, +
4.82e-125FFCP PHASE2:Hg19::chr5:35859622..35859626,+#_e6c960257014ec9f3b0f1ec3483b4685p@chr5:35859622..35859626, +
2.55e-96FFCP PHASE2:Hg19::chr15:89179440..89179457,-#_da17c4eaefdc2bdb98187e3fb3a0ae74-, p@chr15:89179440..89179457
2.55e-96FFCP PHASE1:Hg19::chr15:89179440..89179457,-#_da17c4eaefdc2bdb98187e3fb3a0ae74p@chr15:89179440..89179457, -
1.42e-94FFCP PHASE1:Hg19::chr5:35854487..35854499,-#_ecdf5399abf09a27d14fdf69181688bbp@chr5:35854487..35854499, -
1.42e-94FFCP PHASE2:Hg19::chr5:35854487..35854499,-#_ecdf5399abf09a27d14fdf69181688bbp@chr5:35854487..35854499, -
1.09e-92FFCP PHASE2:Hg19::chr5:35854779..35854826,+#_422e78d8807de835cb16cf480d724c6dp@chr5:35854779..35854826, +
1.09e-92FFCP PHASE1:Hg19::chr5:35854779..35854826,+#_422e78d8807de835cb16cf480d724c6dp@chr5:35854779..35854826, +
4.33e-92FFCP PHASE1:Hg19::chr4:103551892..103551903,-#_73949685289049ba469eb9401b5c4d2ep@chr4:103551892..103551903, -
4.33e-92FFCP PHASE2:Hg19::chr4:103551892..103551903,-#_73949685289049ba469eb9401b5c4d2e-, p@chr4:103551892..103551903
1.97e-90FFCP PHASE2:Hg19::chr5:35856882..35856909,-#_c13075825743dd1dd4acbdb8239ac84ep@chr5:35856882..35856909, -
1.97e-90FFCP PHASE1:Hg19::chr5:35856882..35856909,-#_c13075825743dd1dd4acbdb8239ac84ep@chr5:35856882..35856909, -
2.93e-90FFCP PHASE1:Hg19::chr18:68318174..68318193,-#_79bb3c1cb26b91ee5f24f37a243a7711p1@GTSCR1
2.93e-90FFCP PHASE2:Hg19::chr18:68318174..68318193,-#_79bb3c1cb26b91ee5f24f37a243a7711p1@GTSCR1
5.78e-88FFCP PHASE2:Hg19::chr7:97880779..97880793,+#_0d7c9c2cb592d7943685eb717136e20fp@chr7:97880779..97880793, +
5.78e-88FFCP PHASE1:Hg19::chr7:97880779..97880793,+#_0d7c9c2cb592d7943685eb717136e20fp@chr7:97880779..97880793, +
8.73e-88FFCP PHASE2:Hg19::chr1:25255894..25255906,+#_375b337ad2e84ef108f76b7d938b98bap@chr1:25255894..25255906, +
8.73e-88FFCP PHASE1:Hg19::chr1:25255894..25255906,+#_375b337ad2e84ef108f76b7d938b98bap@chr1:25255894..25255906, +
4.59e-87FFCP PHASE1:Hg19::chr2:38830433..38830444,-#_e49bc4be3ee9d37ba19a60a712a83f1ep10@HNRPLL
4.59e-87FFCP PHASE2:Hg19::chr2:38830433..38830444,-#_e49bc4be3ee9d37ba19a60a712a83f1ep10@HNRPLL
1.31e-86FFCP PHASE1:Mm9::chr11:99015330..99015341,-#_203e0f2adf58a0ef9882a5850b4ab5afp@chr11:99015330..99015341, -
1.31e-86FFCP PHASE2:Mm9::chr19:10869146..10869168,-#_203e0f2adf58a0ef9882a5850b4ab5afp@chr19:10869146..10869168, -
1.31e-86FFCP PHASE1:Mm9::chr4:151490126..151490137,+#_203e0f2adf58a0ef9882a5850b4ab5afp3@Tnfrsf25
1.31e-86FFCP PHASE1:Mm9::chr4:32339511..32339518,+#_203e0f2adf58a0ef9882a5850b4ab5afp@chr4:32339511..32339518, +
1.31e-86FFCP PHASE2:Mm9::chr11:99015330..99015341,-#_203e0f2adf58a0ef9882a5850b4ab5af-, p@chr11:99015330..99015341
1.31e-86FFCP PHASE2:Mm9::chr6:48637679..48637692,+#_203e0f2adf58a0ef9882a5850b4ab5afp@chr6:48637679..48637692, +
1.31e-86FFCP PHASE1:Mm9::chr6:48637679..48637692,+#_203e0f2adf58a0ef9882a5850b4ab5afp@chr6:48637679..48637692, +
1.31e-86FFCP PHASE2:Mm9::chr14:54150421..54150439,+#_203e0f2adf58a0ef9882a5850b4ab5afp1@uc007tsm.1
1.31e-86FFCP PHASE2:Mm9::chr14:54831123..54831141,+#_203e0f2adf58a0ef9882a5850b4ab5afp1@ENSMUST00000103733
1.31e-86FFCP PHASE2:Mm9::chr4:151490126..151490137,+#_203e0f2adf58a0ef9882a5850b4ab5afp3@Tnfrsf25
1.31e-86FFCP PHASE2:Mm9::chr4:32339511..32339518,+#_203e0f2adf58a0ef9882a5850b4ab5afp@chr4:32339511..32339518, +
1.31e-86FFCP PHASE1:Mm9::chr19:10869146..10869168,-#_203e0f2adf58a0ef9882a5850b4ab5afp@chr19:10869146..10869168, -
1.31e-86FFCP PHASE1:Mm9::chr14:54150421..54150439,+#_203e0f2adf58a0ef9882a5850b4ab5afp1@uc007tsm.1
1.31e-86FFCP PHASE1:Mm9::chr14:54831123..54831141,+#_203e0f2adf58a0ef9882a5850b4ab5afp1@ENSMUST00000103733
2.98e-86FFCP PHASE2:Hg19::chr10:14611822..14611844,-#_106efaa98116e05a2f7fa28c5a34f340p@chr10:14611822..14611844, -
2.98e-86FFCP PHASE1:Hg19::chr10:14611822..14611844,-#_106efaa98116e05a2f7fa28c5a34f340p@chr10:14611822..14611844, -
3.57e-86FFCP PHASE1:Hg19::chr4:90205082..90205093,+#_4d8ea01efdbd51268fde0731980c0014p@chr4:90205082..90205093, +
3.57e-86FFCP PHASE2:Hg19::chr4:90205082..90205093,+#_4d8ea01efdbd51268fde0731980c0014p@chr4:90205082..90205093, +
9.89e-85FFCP PHASE2:Hg19::chr16:57162957..57162973,+#_491942319898bebeee8ab400008d0cc4p@chr16:57162957..57162973, +
9.89e-85FFCP PHASE1:Hg19::chr16:57162957..57162973,+#_491942319898bebeee8ab400008d0cc4p@chr16:57162957..57162973, +
1.01e-83FFCP PHASE1:Hg19::chr2:87053288..87053295,-#_26c71318a0dad23d3a9fc12798cc3c6bp@chr2:87053288..87053295, -
1.01e-83FFCP PHASE2:Hg19::chr2:87053288..87053295,-#_26c71318a0dad23d3a9fc12798cc3c6bp@chr2:87053288..87053295, -
1.1e-83FFCP PHASE1:Hg19::chr6:128299606..128299618,+#_e9b7d28ba957183de2fa1af9b1214688p@chr6:128299606..128299618, +
1.1e-83FFCP PHASE1:Hg19::chr11:122709344..122709378,+#_e9b7d28ba957183de2fa1af9b1214688p@chr11:122709344..122709378, +
1.1e-83FFCP PHASE2:Hg19::chr11:122709344..122709378,+#_e9b7d28ba957183de2fa1af9b1214688p@chr11:122709344..122709378, +
1.1e-83FFCP PHASE2:Hg19::chr6:128299606..128299618,+#_e9b7d28ba957183de2fa1af9b1214688p@chr6:128299606..128299618, +
1.69e-83FFCP PHASE2:Hg19::chr5:35780579..35780585,+#_e1bdef9ad35278de8accf5d62f66b1d4p@chr5:35780579..35780585, +
1.69e-83FFCP PHASE1:Hg19::chr5:35780579..35780585,+#_e1bdef9ad35278de8accf5d62f66b1d4p@chr5:35780579..35780585, +
1.02e-82FFCP PHASE1:Hg19::chr5:35859218..35859252,-#_874fc92678ebe1c01fda3dd83b12d078p@chr5:35859218..35859252, -
1.02e-82FFCP PHASE2:Hg19::chr5:35859218..35859252,-#_874fc92678ebe1c01fda3dd83b12d078p@chr5:35859218..35859252, -
1.33e-82FFCP PHASE2:Hg19::chr12:49375076..49375089,-#_78dbfd06a63f156aa8d393e7a03d8d00p@chr12:49375076..49375089, -
1.33e-82FFCP PHASE1:Hg19::chr12:49375076..49375089,-#_78dbfd06a63f156aa8d393e7a03d8d00p@chr12:49375076..49375089, -
3.02e-82FFCP PHASE1:Hg19::chr10:9060907..9060927,-#_f50af08e5869c89bbafed91911443d39p@chr10:9060907..9060927, -
3.02e-82FFCP PHASE2:Hg19::chr10:9060907..9060927,-#_f50af08e5869c89bbafed91911443d39p@chr10:9060907..9060927, -
4.05e-82FFCP PHASE2:Hg19::chr12:10561626..10561641,-#_fb3ef584c86bf0308aea07975f48ec75p@chr12:10561626..10561641, -
4.05e-82FFCP PHASE1:Hg19::chr12:10561626..10561641,-#_fb3ef584c86bf0308aea07975f48ec75p@chr12:10561626..10561641, -
4.31e-82FFCP PHASE1:Hg19::chr7:150178764..150178778,-#_84e6548312b91eed0fa55b91e568a896p@chr7:150178764..150178778, -
4.31e-82FFCP PHASE2:Hg19::chr7:150178764..150178778,-#_84e6548312b91eed0fa55b91e568a896p@chr7:150178764..150178778, -
5.81e-82FFCP PHASE2:Hg19::chr2:182038499..182038509,+#_4f0398d4e8e47f8f3633c6043e8fa8d0p@chr2:182038499..182038509, +
5.81e-82FFCP PHASE1:Hg19::chr2:182038499..182038509,+#_4f0398d4e8e47f8f3633c6043e8fa8d0p@chr2:182038499..182038509, +
1.02e-81FFCP PHASE1:Hg19::chr4:4271366..4271377,-#_0c178b02033f6758db33de1c291b6439p@chr4:4271366..4271377, -
1.02e-81FFCP PHASE2:Hg19::chr4:4271366..4271377,-#_0c178b02033f6758db33de1c291b6439p@chr4:4271366..4271377, -
8.22e-81FFCP PHASE2:Hg19::chr11:108094238..108094253,+#_1732ce444bc3b73a474f683378b613ffp10@ATM
8.22e-81FFCP PHASE1:Hg19::chr11:108094238..108094253,+#_1732ce444bc3b73a474f683378b613ffp10@ATM
2.22e-80FFCP PHASE1:Hg19::chr12:12867774..12867787,-#_f605bea605792660c92711700d567b76p@chr12:12867774..12867787, -
2.22e-80FFCP PHASE2:Hg19::chr12:12867774..12867787,-#_f605bea605792660c92711700d567b76p@chr12:12867774..12867787, -
8.6e-79FFCP PHASE1:Hg19::chr5:67571114..67571129,-#_d5175924d806a96ef8ade160620c4355p@chr5:67571114..67571129, -
8.6e-79FFCP PHASE2:Hg19::chr5:67571114..67571129,-#_d5175924d806a96ef8ade160620c4355p@chr5:67571114..67571129, -
2.3e-78FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_12982197b0a456c3fa36e24c8a0afb04p@chr5:123440486..123440504, -
2.3e-78FFCP PHASE1:Mm9::chr12:74704873..74704900,+#_12982197b0a456c3fa36e24c8a0afb04p@chr12:74704873..74704900, +
2.3e-78FFCP PHASE1:Mm9::chr7:31935025..31935037,+#_12982197b0a456c3fa36e24c8a0afb04p@chr7:31935025..31935037, +
2.3e-78FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_12982197b0a456c3fa36e24c8a0afb04p@chr5:123440486..123440504, -
2.3e-78FFCP PHASE2:Mm9::chr14:54811976..54811990,+#_12982197b0a456c3fa36e24c8a0afb04p1@ENSMUST00000103714
2.3e-78FFCP PHASE2:Mm9::chr8:84082784..84082795,+#_12982197b0a456c3fa36e24c8a0afb04p@chr8:84082784..84082795, +
2.3e-78FFCP PHASE2:Mm9::chr14:56207154..56207165,-#_12982197b0a456c3fa36e24c8a0afb04p@chr14:56207154..56207165, -
2.3e-78FFCP PHASE1:Mm9::chr8:84082784..84082795,+#_12982197b0a456c3fa36e24c8a0afb04p@chr8:84082784..84082795, +
2.3e-78FFCP PHASE2:Mm9::chr12:74704873..74704900,+#_12982197b0a456c3fa36e24c8a0afb04p@chr12:74704873..74704900, +
2.3e-78FFCP PHASE1:Mm9::chr14:54811976..54811990,+#_12982197b0a456c3fa36e24c8a0afb04p1@ENSMUST00000103714
2.3e-78FFCP PHASE1:Mm9::chr14:56207154..56207165,-#_12982197b0a456c3fa36e24c8a0afb04-, p@chr14:56207154..56207165
2.3e-78FFCP PHASE2:Mm9::chr7:31935025..31935037,+#_12982197b0a456c3fa36e24c8a0afb04p@chr7:31935025..31935037, +
2.56e-78FFCP PHASE2:Hg19::chr6:143228788..143228799,-#_b458f5e87f53433f1bd1f9b8af9339fcp@chr6:143228788..143228799, -
2.56e-78FFCP PHASE1:Hg19::chr6:143228788..143228799,-#_b458f5e87f53433f1bd1f9b8af9339fcp@chr6:143228788..143228799, -
2.82e-78FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_a52303727c62da45c0c8fd84b0418811p@chr4:32422919..32422935, +
2.82e-78FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_a52303727c62da45c0c8fd84b0418811p@chr5:123440767..123440778, +
2.82e-78FFCP PHASE2:Mm9::chr14:54838649..54838660,+#_a52303727c62da45c0c8fd84b0418811+, p@chr14:54838649..54838660
2.82e-78FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_a52303727c62da45c0c8fd84b0418811p@chr5:123440767..123440778, +
2.82e-78FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_a52303727c62da45c0c8fd84b0418811p@chr4:32422919..32422935, +
2.82e-78FFCP PHASE1:Mm9::chr14:54838649..54838660,+#_a52303727c62da45c0c8fd84b0418811p@chr14:54838649..54838660, +
3.46e-78FFCP PHASE2:Mm9::chr15:27786221..27786240,-#_86771277fc0a14b603cbec14a9b0137dp@chr15:27786221..27786240, -
3.46e-78FFCP PHASE1:Mm9::chr15:27786221..27786240,-#_86771277fc0a14b603cbec14a9b0137dp@chr15:27786221..27786240, -
4.25e-78FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_18386f6541465440cc970f1f17ab7f0bp@chr6:99215016..99215036, +
4.25e-78FFCP PHASE1:Mm9::chr3:103672068..103672090,-#_18386f6541465440cc970f1f17ab7f0bp@chr3:103672068..103672090, -
4.25e-78FFCP PHASE2:Mm9::chr3:103672068..103672090,-#_18386f6541465440cc970f1f17ab7f0bp@chr3:103672068..103672090, -
4.25e-78FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_18386f6541465440cc970f1f17ab7f0bp@chr6:99215016..99215036, +
5.22e-78FFCP PHASE2:Mm9::chr6:48634453..48634468,-#_4725b729f4d10409e0be41c1f6a23fdap@chr6:48634453..48634468, -
5.22e-78FFCP PHASE1:Mm9::chr6:48634453..48634468,-#_4725b729f4d10409e0be41c1f6a23fdap@chr6:48634453..48634468, -
6.45e-78FFCP PHASE2:Hg19::chr7:36816941..36816949,+#_edb57007deb03a703a3ef969cdfb775c+, p@chr7:36816941..36816949
6.45e-78FFCP PHASE1:Hg19::chr7:36816941..36816949,+#_edb57007deb03a703a3ef969cdfb775cp@chr7:36816941..36816949, +
7.86e-78FFCP PHASE2:Mm9::chr15:60018823..60018838,-#_96022322bd8840b69244e476600cf608p5@uc007vxz.1
7.86e-78FFCP PHASE1:Mm9::chr15:60018823..60018838,-#_96022322bd8840b69244e476600cf608p5@uc007vxz.1