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CL:0002609

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Name:neuron of cerebral cortex
Namespace:FANTOM
Definition:"A CNS neuron of the cerebral cortex." [GOC:tfm]
Xrefs:
links:

BTO:0004102

FMA:84104
Synonyms: "cortical neuron" EXACT []
Created by:tmeehan
Creation date:2011-03-06T07:37:08Z


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0010012(cerebral cortex neuron),CL:0012001(neuron of the forebrain)
part_of:UBERON:0000956(cerebral cortex)



Children


derives from:FF:0000204 (cortical mouse neuron sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0002609 (neuron of cerebral cortex), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.36e-86FFCP PHASE2:Mm9::chr4:82879069..82879081,-#_9ec1c551d5b69d6244b85dcff0b31f01p8@Ttc39b
1.36e-86FFCP PHASE1:Mm9::chr4:82879069..82879081,-#_9ec1c551d5b69d6244b85dcff0b31f01p8@Ttc39b
1.01e-74FFCP PHASE2:Mm9::chr5:99703670..99703683,+#_5032f7c18de5cbe0f635cc3cfe7d184dp@chr5:99703670..99703683, +
1.01e-74FFCP PHASE1:Mm9::chr5:99703670..99703683,+#_5032f7c18de5cbe0f635cc3cfe7d184dp@chr5:99703670..99703683, +
2.48e-72FFCP PHASE1:Mm9::chr1:41800574..41800586,+#_54f10a7b558cde98ac7f8c5be9eef78bp@chr1:41800574..41800586, +
2.48e-72FFCP PHASE2:Mm9::chr1:173959095..173959106,-#_54f10a7b558cde98ac7f8c5be9eef78bp@chr1:173959095..173959106, -
2.48e-72FFCP PHASE1:Mm9::chr15:83602482..83602487,+#_54f10a7b558cde98ac7f8c5be9eef78bp@chr15:83602482..83602487, +
2.48e-72FFCP PHASE1:Mm9::chr12:109150430..109150441,-#_54f10a7b558cde98ac7f8c5be9eef78bp@chr12:109150430..109150441, -
2.48e-72FFCP PHASE2:Mm9::chr12:109150430..109150441,-#_54f10a7b558cde98ac7f8c5be9eef78bp@chr12:109150430..109150441, -
2.48e-72FFCP PHASE2:Mm9::chr1:41800574..41800586,+#_54f10a7b558cde98ac7f8c5be9eef78bp@chr1:41800574..41800586, +
2.48e-72FFCP PHASE1:Mm9::chr1:173959095..173959106,-#_54f10a7b558cde98ac7f8c5be9eef78bp@chr1:173959095..173959106, -
2.48e-72FFCP PHASE2:Mm9::chr15:83602482..83602487,+#_54f10a7b558cde98ac7f8c5be9eef78bp@chr15:83602482..83602487, +
8.11e-66FFCP PHASE2:Mm9::chr9:41387743..41387752,+#_547b9ca565223778eee08d7db2e79dffp@chr9:41387743..41387752, +
8.11e-66FFCP PHASE1:Mm9::chr9:41387743..41387752,+#_547b9ca565223778eee08d7db2e79dffp@chr9:41387743..41387752, +
1.05e-65FFCP PHASE2:Mm9::chr2:151906634..151906642,+#_91945b6d3b1dc1aad9ac884f341e7ed3p@chr2:151906634..151906642, +
1.05e-65FFCP PHASE1:Mm9::chr2:151906634..151906642,+#_91945b6d3b1dc1aad9ac884f341e7ed3p@chr2:151906634..151906642, +
1.0e-60FFCP PHASE2:Mm9::chr10:42298108..42298119,-#_d64acd6c684286158f7279adfda31621p@chr10:42298108..42298119, -
1.0e-60FFCP PHASE1:Mm9::chr10:42298108..42298119,-#_d64acd6c684286158f7279adfda31621p@chr10:42298108..42298119, -
1.33e-60FFCP PHASE1:Mm9::chr8:127316961..127316970,+#_a1c60ee6d8d9280b55127f9d4af8d4e8p4@Trim67
1.33e-60FFCP PHASE2:Mm9::chr8:127316961..127316970,+#_a1c60ee6d8d9280b55127f9d4af8d4e8p4@Trim67
1.77e-60FFCP PHASE2:Mm9::chr12:50482811..50482817,-#_c257793a7166bf9edc0c06b1caf977aep@chr12:50482811..50482817, -
1.77e-60FFCP PHASE1:Mm9::chr12:50482811..50482817,-#_c257793a7166bf9edc0c06b1caf977aep@chr12:50482811..50482817, -
2.34e-60FFCP PHASE1:Mm9::chr2:35960327..35960338,-#_89a19d692574fdbe3c8ad4066d6d2aeep@chr2:35960327..35960338, -
2.34e-60FFCP PHASE2:Mm9::chr2:35960327..35960338,-#_89a19d692574fdbe3c8ad4066d6d2aee-, p@chr2:35960327..35960338
8.66e-59FFCP PHASE2:Mm9::chr1:41800521..41800543,+#_3ebd5b7295be411c635615f52a176318p@chr1:41800521..41800543, +
8.66e-59FFCP PHASE1:Mm9::chr1:41800521..41800543,+#_3ebd5b7295be411c635615f52a176318p@chr1:41800521..41800543, +
1.09e-58FFCP PHASE1:Mm9::chr1:57028182..57028191,-#_42e620c8decf87ea7d9412db24b392ebp11@Satb2
1.09e-58FFCP PHASE2:Mm9::chr1:57028182..57028191,-#_42e620c8decf87ea7d9412db24b392ebp11@Satb2
1.71e-58FFCP PHASE2:Mm9::chr12:28025618..28025629,-#_c57bb6a51287bb14c2d3f7657093f1e5p@chr12:28025618..28025629, -
1.71e-58FFCP PHASE1:Mm9::chr12:28025618..28025629,-#_c57bb6a51287bb14c2d3f7657093f1e5p@chr12:28025618..28025629, -
3.91e-58FFCP PHASE2:Mm9::chr6:97567621..97567636,-#_5a3ded3869d97eecd4e84cc96c0b0e6ap19@Frmd4b
3.91e-58FFCP PHASE2:Mm9::chr2:6792577..6792584,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr2:6792577..6792584, +
3.91e-58FFCP PHASE1:Mm9::chr11:69843632..69843643,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap28@Dlg4
3.91e-58FFCP PHASE1:Mm9::chr2:6792577..6792584,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr2:6792577..6792584, +
3.91e-58FFCP PHASE1:Mm9::chr12:50486639..50486645,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr12:50486639..50486645, +
3.91e-58FFCP PHASE1:Mm9::chr6:144157960..144157967,-#_5a3ded3869d97eecd4e84cc96c0b0e6ap20@Sox5
3.91e-58FFCP PHASE2:Mm9::chr12:50486639..50486645,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr12:50486639..50486645, +
3.91e-58FFCP PHASE2:Mm9::chr6:144157960..144157967,-#_5a3ded3869d97eecd4e84cc96c0b0e6ap20@Sox5
3.91e-58FFCP PHASE2:Mm9::chr11:98233288..98233299,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr11:98233288..98233299, +
3.91e-58FFCP PHASE2:Mm9::chr11:98187500..98187512,-#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr11:98187500..98187512, -
3.91e-58FFCP PHASE2:Mm9::chr11:69843632..69843643,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap28@Dlg4
3.91e-58FFCP PHASE1:Mm9::chr11:98187500..98187512,-#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr11:98187500..98187512, -
3.91e-58FFCP PHASE1:Mm9::chr11:98233288..98233299,+#_5a3ded3869d97eecd4e84cc96c0b0e6ap@chr11:98233288..98233299, +
3.91e-58FFCP PHASE1:Mm9::chr6:97567621..97567636,-#_5a3ded3869d97eecd4e84cc96c0b0e6ap19@Frmd4b
2.97e-53FFCP PHASE1:Mm9::chr5:122345353..122345358,-#_f55fcf0224b039e2f66f598c474f6ffbp5@Cux2
2.97e-53FFCP PHASE2:Mm9::chr5:122345353..122345358,-#_f55fcf0224b039e2f66f598c474f6ffbp5@Cux2
3.65e-53FFCP PHASE2:Mm9::chr6:144158267..144158282,-#_1e2a36ea50cc2036f31535978c24c1b8p16@Sox5
3.65e-53FFCP PHASE1:Mm9::chr12:50483044..50483065,+#_1e2a36ea50cc2036f31535978c24c1b8p@chr12:50483044..50483065, +
3.65e-53FFCP PHASE2:Mm9::chr12:50483044..50483065,+#_1e2a36ea50cc2036f31535978c24c1b8p@chr12:50483044..50483065, +
3.65e-53FFCP PHASE1:Mm9::chr6:144158267..144158282,-#_1e2a36ea50cc2036f31535978c24c1b8p16@Sox5
4.48e-53FFCP PHASE2:Mm9::chr5:111846145..111846158,-#_0f8825516df0d030984210b77e5806ebp@chr5:111846145..111846158, -
4.48e-53FFCP PHASE1:Mm9::chr5:111846145..111846158,-#_0f8825516df0d030984210b77e5806ebp@chr5:111846145..111846158, -
6.75e-53FFCP PHASE1:Mm9::chr5:111847671..111847682,+#_7d3935adfd36998427ad66d117b77e9ap@chr5:111847671..111847682, +
6.75e-53FFCP PHASE2:Mm9::chr5:111847671..111847682,+#_7d3935adfd36998427ad66d117b77e9ap@chr5:111847671..111847682, +
1.99e-52FFCP PHASE1:Mm9::chr6:55629311..55629338,-#_3fc5320eb1946155dd404d4056966407p@chr6:55629311..55629338, -
1.99e-52FFCP PHASE2:Mm9::chr6:55629311..55629338,-#_3fc5320eb1946155dd404d4056966407p@chr6:55629311..55629338, -
2.53e-52FFCP PHASE2:Mm9::chr14:13178294..13178303,-#_108d9a494fb3c50eb1ab565d7df42775p7@Fezf2
2.53e-52FFCP PHASE1:Mm9::chr14:13178294..13178303,-#_108d9a494fb3c50eb1ab565d7df42775p7@Fezf2
3.23e-52FFCP PHASE2:Mm9::chr1:179372666..179372678,+#_fc4e055b65c74fe46396cd0cf2f8c237p11@Zfp238
3.23e-52FFCP PHASE1:Mm9::chr1:179372666..179372678,+#_fc4e055b65c74fe46396cd0cf2f8c237p11@Zfp238
4.11e-52FFCP PHASE2:Mm9::chr9:120954001..120954018,-#_0a3233bcf5b250e26fbc134474d8654cp6@Ulk4
4.11e-52FFCP PHASE1:Mm9::chr9:120954001..120954018,-#_0a3233bcf5b250e26fbc134474d8654cp6@Ulk4
4.22e-52FFCP PHASE1:Mm9::chr16:6348598..6348614,+#_f94c765a7e4058db6e56a4aba5476b9cp@chr16:6348598..6348614, +
4.22e-52FFCP PHASE2:Mm9::chr16:6348598..6348614,+#_f94c765a7e4058db6e56a4aba5476b9cp@chr16:6348598..6348614, +
5.23e-52FFCP PHASE1:Mm9::chr8:12395287..12395295,+#_28f276a63f9ef52ebeecc310b6e63e7bp9@Sox1
5.23e-52FFCP PHASE2:Mm9::chr8:12395287..12395295,+#_28f276a63f9ef52ebeecc310b6e63e7bp9@Sox1
8.37e-49FFCP PHASE2:Mm9::chr2:151906701..151906711,+#_1df69dc117499b130ce788076a876246p@chr2:151906701..151906711, +
8.37e-49FFCP PHASE1:Mm9::chr12:28022440..28022451,-#_1df69dc117499b130ce788076a876246p@chr12:28022440..28022451, -
8.37e-49FFCP PHASE1:Mm9::chr2:151906701..151906711,+#_1df69dc117499b130ce788076a876246p@chr2:151906701..151906711, +
8.37e-49FFCP PHASE2:Mm9::chr12:28022440..28022451,-#_1df69dc117499b130ce788076a876246p@chr12:28022440..28022451, -
1.47e-48FFCP PHASE1:Mm9::chr6:55631324..55631335,-#_bd005bf3e9776267f32a5ba4ea3eb812p3@Neurod6
1.47e-48FFCP PHASE2:Mm9::chr6:55631324..55631335,-#_bd005bf3e9776267f32a5ba4ea3eb812p3@Neurod6
1.77e-48FFCP PHASE1:Mm9::chr12:28026549..28026562,-#_bacf71d4a56875fd65bee8e95565d622p@chr12:28026549..28026562, -
1.77e-48FFCP PHASE2:Mm9::chr12:28026549..28026562,-#_bacf71d4a56875fd65bee8e95565d622p@chr12:28026549..28026562, -
2.57e-48FFCP PHASE2:Mm9::chr8:71708148..71708156,-#_e5591d82b3690474441e349202b8b21fp2@ENSMUST00000172413, p2@uc009lxb.1
2.57e-48FFCP PHASE1:Mm9::chr8:71708148..71708156,-#_e5591d82b3690474441e349202b8b21fp2@ENSMUST00000172413, p2@uc009lxb.1
2.57e-48FFCP PHASE1:Mm9::chr1:179372543..179372557,+#_e5591d82b3690474441e349202b8b21fp9@Zfp238
2.57e-48FFCP PHASE2:Mm9::chr1:179372543..179372557,+#_e5591d82b3690474441e349202b8b21fp9@Zfp238
6.34e-47FFCP PHASE1:Mm9::chr12:50485922..50485933,+#_6f9867f59f778bedeed3740c94c0c42ep11@Foxg1
6.34e-47FFCP PHASE2:Mm9::chr6:55631282..55631299,+#_6f9867f59f778bedeed3740c94c0c42ep@chr6:55631282..55631299, +
6.34e-47FFCP PHASE1:Mm9::chr6:55631282..55631299,+#_6f9867f59f778bedeed3740c94c0c42ep@chr6:55631282..55631299, +
6.34e-47FFCP PHASE2:Mm9::chr12:50485922..50485933,+#_6f9867f59f778bedeed3740c94c0c42ep11@Foxg1
8.31e-47FFCP PHASE2:Mm9::chr6:144157869..144157876,-#_76523d43a5fa534ee4655342684ebc5dp26@Sox5
8.31e-47FFCP PHASE1:Mm9::chr6:144157869..144157876,-#_76523d43a5fa534ee4655342684ebc5dp26@Sox5
1.86e-46FFCP PHASE2:Mm9::chr1:42770594..42770600,-#_d23ce86167ca8d63f15408561e9880dcp@chr1:42770594..42770600, -
1.86e-46FFCP PHASE1:Mm9::chr1:42770594..42770600,-#_d23ce86167ca8d63f15408561e9880dcp@chr1:42770594..42770600, -
3.34e-46FFCP PHASE2:Mm9::chr3:84108569..84108582,-#_8534dfaa0be2e09c5a95175f4b8cfdbdp22@Trim2
3.34e-46FFCP PHASE1:Mm9::chr3:84108569..84108582,-#_8534dfaa0be2e09c5a95175f4b8cfdbdp22@Trim2
4.13e-46FFCP PHASE1:Mm9::chr12:28022352..28022363,-#_fa228b6952b6e1c76c08e226b98eb2aap@chr12:28022352..28022363, -
4.13e-46FFCP PHASE1:Mm9::chr12:50478644..50478659,+#_fa228b6952b6e1c76c08e226b98eb2aap@chr12:50478644..50478659, +
4.13e-46FFCP PHASE2:Mm9::chr12:50478644..50478659,+#_fa228b6952b6e1c76c08e226b98eb2aap@chr12:50478644..50478659, +
4.13e-46FFCP PHASE1:Mm9::chr12:50485343..50485352,+#_fa228b6952b6e1c76c08e226b98eb2aap@chr12:50485343..50485352, +
4.13e-46FFCP PHASE2:Mm9::chr12:28022352..28022363,-#_fa228b6952b6e1c76c08e226b98eb2aap@chr12:28022352..28022363, -
4.13e-46FFCP PHASE2:Mm9::chr12:50485343..50485352,+#_fa228b6952b6e1c76c08e226b98eb2aa+, p@chr12:50485343..50485352
5.11e-46FFCP PHASE2:Mm9::chr12:50485948..50485959,+#_9690926b2729b2cfaa62bd72cb674f54p7@Foxg1
5.11e-46FFCP PHASE2:Mm9::chr12:28026469..28026480,-#_9690926b2729b2cfaa62bd72cb674f54p@chr12:28026469..28026480, -
5.11e-46FFCP PHASE1:Mm9::chr11:98189657..98189671,-#_9690926b2729b2cfaa62bd72cb674f54p@chr11:98189657..98189671, -
5.11e-46FFCP PHASE1:Mm9::chr12:50485948..50485959,+#_9690926b2729b2cfaa62bd72cb674f54p7@Foxg1
5.11e-46FFCP PHASE2:Mm9::chr11:98189657..98189671,-#_9690926b2729b2cfaa62bd72cb674f54p@chr11:98189657..98189671, -
5.11e-46FFCP PHASE1:Mm9::chr12:28026469..28026480,-#_9690926b2729b2cfaa62bd72cb674f54p@chr12:28026469..28026480, -