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EFO:0002091

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Name:biological replicate
Namespace:FANTOM
Definition:{{{def}}}
Xrefs:
links:
{{{xref}}}:[1]
Synonyms: {{{synonym}}}
Comments:{{{comment}}}
Alt_id: {{{alt_id}}}
Subset: {{{subset}}}
Created by:{{{created_by}}}
Creation date:{{{obo_creation_date}}}
Has quality:{{{has_quality}}}


Ontology association

Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.



link to ontology dataset


data

Parents

is_a:EFO:0000683(replicate)
disjoint_from:[[{{{disjoint_from}}}]](
The page type input value "{{{disjoint_from}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
)
union_of:[[{{{union_of}}}]](
The page type input value "{{{union_of}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
)
derives_from:[[{{{derives_from}}}]](
The page type input value "{{{derives_from}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
)
develops_from:[[{{{develops_from}}}]](
The page type input value "{{{develops_from}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
)
has_quality:[[{{{has_quality}}}]](
The page type input value "{{{has_quality}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
)
located_in:[[{{{located_in}}}]](
The page type input value "{{{located_in}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
)
part_of:[[{{{part_of}}}]](
The page type input value "{{{part_of}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
)



Children


is a:FF:0000662 (Fibroblast - skin spinal muscular atrophy, cytoplasmic fraction),FF:0000677 (Fibroblast - skin spinal muscular atrophy, whole cell),FF:0011287 (mouse fibroblast cell line: CRL-1658 NIH/3T3 sample),FF:10001-101A3 (Clontech Mouse Universal Reference Total RNA, pool1),FF:10003-101A7 (SABiosciences XpressRef Mouse Universal Total RNA, pool1),FF:10008-101B6 (Universal RNA - Mouse Normal Tissues Biochain, pool1),FF:10010-101C1 (adipose tissue, adult, pool1),FF:10011-101C2 (bladder, adult, pool1),FF:10012-101C3 (brain, adult, pool1),FF:10013-101C4 (cervix, adult, pool1),FF:10014-101C5 (colon, adult, pool1),FF:10015-101C6 (esophagus, adult, pool1),FF:10016-101C7 (heart, adult, pool1),FF:10017-101C8 (kidney, adult, pool1),FF:10018-101C9 (liver, adult, pool1),FF:10019-101D1 (lung, adult, pool1),FF:10020-101D2 (ovary, adult, pool1),FF:10021-101D3 (placenta, adult, pool1),FF:10022-101D4 (prostate, adult, pool1),FF:10023-101D5 (skeletal muscle, adult, pool1),FF:10024-101D6 (small intestine, adult, pool1),FF:10025-101D7 (spleen, adult, pool1),FF:10026-101D8 (testis, adult, pool1),FF:10027-101D9 (thymus, adult, pool1),FF:10028-101E1 (thyroid, adult, pool1),FF:10029-101E2 (trachea, adult, pool1),FF:10030-101E3 (retina, adult, pool1),FF:10031-101E4 (temporal lobe, adult, pool1),FF:10032-101E5 (postcentral gyrus, adult, pool1),FF:10033-101E6 (pons, adult, pool1),FF:10034-101E7 (parietal lobe, adult, pool1),FF:10035-101E8 (paracentral gyrus, adult, pool1),FF:10036-101E9 (occipital pole, adult, pool1),FF:10037-101F1 (nucleus accumbens, adult, pool1),FF:10038-101F2 (medulla oblongata, adult, pool1),FF:10039-101F3 (insula, adult, pool1),FF:10040-101F4 (frontal lobe, adult, pool1),FF:10041-101F5 (dura mater, adult, donor1),FF:10042-101F6 (corpus callosum, adult, pool1),FF:10043-101F7 (thymus, fetal, pool1),FF:10044-101F8 (spleen, fetal, pool1),FF:10045-101F9 (kidney, fetal, pool1),FF:10046-101G1 (heart, fetal, pool1),FF:10047-101G2 (tonsil, adult, pool1),FF:10048-101G3 (smooth muscle, adult, pool1),FF:10049-101G4 (pancreas, adult, donor1),FF:10052-101G7 (aorta, adult, pool1),FF:10053-101G8 (blood, adult, pool1),FF:10054-101G9 (eye, fetal, donor1),FF:10055-101H1 (uterus, fetal, donor1)... further results

Ontology Tree: Loaded from BioPortal


FF samples

It includes FANTOM5 samples that overlay the Cell ontology.



Enrichment analysis: top 100 FFCP enriched with this ontology term
TOP 100 FANTOM5 Cage Peaks enriched with EFO:0002091 (biological replicate), sorted by p-values
Analyst: Hideya Kawaji



link to source dataset
human : data

mouse : data

No analysis results for this cluster








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