Personal tools

MCL coexpression mm9:59

From FANTOM5_SSTAR

Jump to: navigation, search


Phase1 CAGE Peaks

  Short description
Mm9::chr10:106932319..106932352,+ p@chr10:106932319..106932352
+
Mm9::chr10:127476464..127476477,+ p@chr10:127476464..127476477
+
Mm9::chr11:116108512..116108530,- p@chr11:116108512..116108530
-
Mm9::chr11:118524835..118524836,- p@chr11:118524835..118524836
-
Mm9::chr11:61022236..61022249,+ p1@Aldh3a1
Mm9::chr11:67015245..67015256,+ p@chr11:67015245..67015256
+
Mm9::chr11:67051266..67051278,+ p3@Myh4
Mm9::chr11:68956064..68956068,+ p@chr11:68956064..68956068
+
Mm9::chr11:99146574..99146578,- p1@Krt24
Mm9::chr11:99620539..99620544,- p1@ENSMUST00000105061
Mm9::chr11:99676975..99676978,- p1@Gm11564
Mm9::chr11:99699383..99699387,- p1@2300003K06Rik
Mm9::chr11:99946757..99946762,- p4@Krt32
Mm9::chr11:99966952..99966959,- p1@Krt36
Mm9::chr11:99980147..99980157,- p6@Krt13
Mm9::chr11:99983018..99983025,- p5@Krt13
Mm9::chr11:99990613..99990619,+ p@chr11:99990613..99990619
+
Mm9::chr12:31152256..31152266,- p2@2310016D03Rik
Mm9::chr12:57792498..57792515,+ p2@Pax9
Mm9::chr12:57793900..57793908,- p@chr12:57793900..57793908
-
Mm9::chr12:57796615..57796687,+ p1@Pax9
Mm9::chr13:83642532..83642542,- p@chr13:83642532..83642542
-
Mm9::chr13:99857857..99857881,- p1@2310020H05Rik
Mm9::chr14:100588795..100588806,- -
p@chr14:100588795..100588806
Mm9::chr14:31693434..31693443,+ p@chr14:31693434..31693443
+
Mm9::chr14:60296379..60296423,- p@chr14:60296379..60296423
-
Mm9::chr15:101363250..101363255,- p1@Krt84
Mm9::chr15:101723347..101723352,- p1@Krt76
Mm9::chr15:101749231..101749250,- p@chr15:101749231..101749250
-
Mm9::chr15:101755156..101755173,- p1@Krt4
Mm9::chr15:73581208..73581213,+ p@chr15:73581208..73581213
+
Mm9::chr16:18586986..18586991,- -
p@chr16:18586986..18586991
Mm9::chr16:18588291..18588301,- p2@Tbx1
Mm9::chr16:18588865..18588877,- p@chr16:18588865..18588877
-
Mm9::chr16:18588911..18588925,- p@chr16:18588911..18588925
-
Mm9::chr16:18588973..18589002,- p@chr16:18588973..18589002
-
Mm9::chr16:22918005..22918008,+ p12@Fetub
Mm9::chr16:22918330..22918340,+ p11@Fetub
Mm9::chr16:22918343..22918350,+ p13@Fetub
Mm9::chr16:22918373..22918384,+ p10@Fetub
Mm9::chr16:22918451..22918458,+ p2@Fetub
Mm9::chr16:42166864..42166867,+ p@chr16:42166864..42166867
+
Mm9::chr16:43974026..43974035,- p@chr16:43974026..43974035
-
Mm9::chr16:88507201..88507210,- p2@Cldn17
Mm9::chr16:88627903..88627912,- p1@2310079G19Rik
Mm9::chr16:88708206..88708210,- p1@2310061N02Rik
Mm9::chr16:88774446..88774451,- p1@2310057N15Rik
Mm9::chr16:88778074..88778080,+ p1@ENSMUST00000009191
Mm9::chr16:93795080..93795090,- p2@ENSMUST00000165796
p2@uc007zzy.1
Mm9::chr16:93795127..93795163,- p1@ENSMUST00000165796
p1@uc007zzy.1
Mm9::chr16:94085162..94085179,+ p3@Sim2
Mm9::chr16:94085471..94085495,+ p1@Sim2
Mm9::chr16:95190807..95190837,+ p@chr16:95190807..95190837
+
Mm9::chr16:95190906..95190911,+ p@chr16:95190906..95190911
+
Mm9::chr17:15570276..15570286,- p@chr17:15570276..15570286
-
Mm9::chr17:15570293..15570301,- p@chr17:15570293..15570301
-
Mm9::chr17:24090258..24090267,+ p@chr17:24090258..24090267
+
Mm9::chr17:24092235..24092269,- p1@Sbpl
Mm9::chr17:24092296..24092324,- p2@Sbpl
Mm9::chr17:26627860..26627863,- p@chr17:26627860..26627863
-
Mm9::chr17:67978952..67978962,+ +
p@chr17:67978952..67978962
Mm9::chr17:71368623..71368636,+ p6@Myom1
Mm9::chr17:71368673..71368685,+ p7@Myom1
Mm9::chr18:20535224..20535241,+ p2@Dsg1b
Mm9::chr18:60751437..60751521,- p1@Myoz3
Mm9::chr18:60751537..60751554,- p3@Myoz3
Mm9::chr18:62755974..62755980,- p1@Spink7
Mm9::chr18:70404027..70404032,- p@chr18:70404027..70404032
-
Mm9::chr18:70404043..70404049,- p6@2310002L13Rik
Mm9::chr18:70404072..70404082,- p3@2310002L13Rik
Mm9::chr18:70404134..70404150,- p5@2310002L13Rik
Mm9::chr18:70404214..70404219,- p4@2310002L13Rik
Mm9::chr18:70404244..70404255,- p1@2310002L13Rik
Mm9::chr18:70404339..70404350,- p2@2310002L13Rik
Mm9::chr18:70435860..70435867,- p@chr18:70435860..70435867
-
Mm9::chr18:76271498..76271508,+ p@chr18:76271498..76271508
+
Mm9::chr18:77255320..77255331,- p@chr18:77255320..77255331
-
Mm9::chr18:79257793..79257798,- p@chr18:79257793..79257798
-
Mm9::chr19:34035639..34035644,+ p4@Lipf
Mm9::chr19:34035674..34035677,+ p3@Lipf
Mm9::chr19:34035685..34035700,+ p2@Lipf
Mm9::chr19:34035704..34035745,+ p1@Lipf
Mm9::chr19:34039030..34039042,+ p@chr19:34039030..34039042
+
Mm9::chr19:34039335..34039345,+ p@chr19:34039335..34039345
+
Mm9::chr19:34041399..34041412,- p@chr19:34041399..34041412
-
Mm9::chr19:34043253..34043264,+ p@chr19:34043253..34043264
+
Mm9::chr19:34045246..34045251,+ p@chr19:34045246..34045251
+
Mm9::chr19:34045260..34045268,+ p@chr19:34045260..34045268
+
Mm9::chr19:34045308..34045320,+ p@chr19:34045308..34045320
+
Mm9::chr19:34047510..34047556,+ p@chr19:34047510..34047556
+
Mm9::chr19:34050959..34050968,+ p@chr19:34050959..34050968
+
Mm9::chr19:34051208..34051222,+ p@chr19:34051208..34051222
+
Mm9::chr19:46686975..46686984,+ p@chr19:46686975..46686984
+
Mm9::chr19:57229904..57229951,- p@chr19:57229904..57229951
-
Mm9::chr1:108831018..108831041,+ p1@Serpinb12
Mm9::chr1:108831079..108831101,+ p3@Serpinb12
Mm9::chr1:108831107..108831117,+ p5@Serpinb12
Mm9::chr1:108948908..108948922,- p1@Serpinb3a
Mm9::chr1:110269682..110269688,+ p@chr1:110269682..110269688
+
Mm9::chr1:153097354..153097357,- p@chr1:153097354..153097357
-
Mm9::chr1:153097852..153097857,- p@chr1:153097852..153097857
-
Mm9::chr1:153097871..153097884,- p@chr1:153097871..153097884
-
Mm9::chr1:153097917..153097931,- p@chr1:153097917..153097931
-
Mm9::chr1:153097937..153097967,- p@chr1:153097937..153097967
-
Mm9::chr1:16804330..16804337,+ p@chr1:16804330..16804337
+
Mm9::chr1:16804378..16804385,+ p@chr1:16804378..16804385
+
Mm9::chr1:168611973..168611978,- p1@Fmo9
Mm9::chr1:179573263..179573279,- p2@2310043L19Rik
Mm9::chr1:189743167..189743185,+ +
p@chr1:189743167..189743185
Mm9::chr1:36155397..36155406,- p@chr1:36155397..36155406
-
Mm9::chr1:38014602..38014605,- p1@Lyg1
Mm9::chr1:52741574..52741579,+ p@chr1:52741574..52741579
+
Mm9::chr1:55853220..55853269,+ p@chr1:55853220..55853269
+
Mm9::chr2:120942174..120942183,- p@chr2:120942174..120942183
-
Mm9::chr2:120942190..120942201,- p@chr2:120942190..120942201
-
Mm9::chr2:129838072..129838086,+ p1@Tgm3
Mm9::chr2:129864186..129864212,+ p@chr2:129864186..129864212
+
Mm9::chr2:129870352..129870357,+ p@chr2:129870352..129870357
+
Mm9::chr2:129874079..129874084,- p@chr2:129874079..129874084
-
Mm9::chr2:129874269..129874286,- p@chr2:129874269..129874286
-
Mm9::chr2:129874280..129874305,+ p@chr2:129874280..129874305
+
Mm9::chr2:129874324..129874335,- p@chr2:129874324..129874335
-
Mm9::chr2:153700714..153700723,+ p2@Bpifb2
Mm9::chr2:153700801..153700813,+ p1@Bpifb2
Mm9::chr2:153988342..153988349,+ p1@Bpifa5
Mm9::chr2:154026044..154026056,+ p6@Bpifb1
Mm9::chr2:154026059..154026070,+ p8@Bpifb1
Mm9::chr2:154026088..154026101,+ p5@Bpifb1
Mm9::chr2:154026107..154026121,+ p2@Bpifb1
Mm9::chr2:154028303..154028316,+ p@chr2:154028303..154028316
+
Mm9::chr2:154028356..154028365,+ p@chr2:154028356..154028365
+
Mm9::chr2:154028402..154028426,+ p@chr2:154028402..154028426
+
Mm9::chr2:154028426..154028468,- p@chr2:154028426..154028468
-
Mm9::chr2:154030430..154030445,+ p@chr2:154030430..154030445
+
Mm9::chr2:154030456..154030466,+ p@chr2:154030456..154030466
+
Mm9::chr2:154030489..154030505,+ +
p@chr2:154030489..154030505
Mm9::chr2:154030513..154030522,+ p@chr2:154030513..154030522
+
Mm9::chr2:154031152..154031174,+ p@chr2:154031152..154031174
+
Mm9::chr2:154031197..154031211,- p@chr2:154031197..154031211
-
Mm9::chr2:154031214..154031231,+ p@chr2:154031214..154031231
+
Mm9::chr2:154032166..154032169,+ +
p@chr2:154032166..154032169
Mm9::chr2:154032171..154032193,- p@chr2:154032171..154032193
-
Mm9::chr2:154032184..154032194,+ p@chr2:154032184..154032194
+
Mm9::chr2:154032201..154032233,+ p@chr2:154032201..154032233
+
Mm9::chr2:154032211..154032221,- -
p@chr2:154032211..154032221
Mm9::chr2:154032235..154032241,+ p@chr2:154032235..154032241
+
Mm9::chr2:154032255..154032261,+ p@chr2:154032255..154032261
+
Mm9::chr2:154032873..154032882,+ p@chr2:154032873..154032882
+
Mm9::chr2:154032892..154032907,- p@chr2:154032892..154032907
-
Mm9::chr2:154037257..154037270,- p@chr2:154037257..154037270
-
Mm9::chr2:154037257..154037273,+ p@chr2:154037257..154037273
+
Mm9::chr2:154038734..154038745,+ p@chr2:154038734..154038745
+
Mm9::chr2:154038743..154038767,- p@chr2:154038743..154038767
-
Mm9::chr2:154038774..154038797,+ p@chr2:154038774..154038797
+
Mm9::chr2:154039743..154039754,+ p@chr2:154039743..154039754
+
Mm9::chr2:154039757..154039790,+ p@chr2:154039757..154039790
+
Mm9::chr2:154039800..154039811,+ p@chr2:154039800..154039811
+
Mm9::chr2:154039828..154039854,+ p@chr2:154039828..154039854
+
Mm9::chr2:154040994..154041006,+ p@chr2:154040994..154041006
+
Mm9::chr2:154041029..154041049,- p@chr2:154041029..154041049
-
Mm9::chr2:154042903..154042945,+ p@chr2:154042903..154042945
+
Mm9::chr2:154045916..154045946,+ p@chr2:154045916..154045946
+
Mm9::chr2:154045946..154045966,- p@chr2:154045946..154045966
-
Mm9::chr2:164008328..164008348,- p4@Wfdc5
Mm9::chr2:164008403..164008422,- p2@Wfdc5
Mm9::chr2:164008449..164008456,- p6@Wfdc5
Mm9::chr2:180126739..180126742,+ p@chr2:180126739..180126742
+
Mm9::chr2:52061738..52061746,- p@chr2:52061738..52061746
-
Mm9::chr2:60560588..60560599,- p10@Itgb6
Mm9::chr2:71913136..71913144,- p@chr2:71913136..71913144
-
Mm9::chr2:84662683..84662699,- p2@Smtnl1
Mm9::chr3:113280651..113280658,- p7@Amy1
Mm9::chr3:30690822..30690825,+ p@chr3:30690822..30690825
+
Mm9::chr3:92338424..92338441,- p@chr3:92338424..92338441
-
Mm9::chr3:93197618..93197621,+ p1@Rptn
Mm9::chr4:124380960..124380970,+ p@chr4:124380960..124380970
+
Mm9::chr4:124380981..124380984,+ p@chr4:124380981..124380984
+
Mm9::chr4:132626792..132626797,- p@chr4:132626792..132626797
-
Mm9::chr4:132626809..132626820,- p@chr4:132626809..132626820
-
Mm9::chr4:32400050..32400057,+ p@chr4:32400050..32400057
+
Mm9::chr5:121977233..121977267,- p8@Mapkapk5
Mm9::chr5:121977269..121977278,- p16@Mapkapk5
Mm9::chr5:64359159..64359160,+ p@chr5:64359159..64359160
+
Mm9::chr5:76792812..76792816,- p1@Nmu
Mm9::chr5:86898080..86898087,- p3@Tmprss11a
Mm9::chr5:88398480..88398486,+ p1@2310003L06Rik
Mm9::chr5:91456483..91456518,+ p1@Epgn
Mm9::chr6:125640633..125640642,+ p3@Ano2
Mm9::chr6:132314147..132314153,- p1@Gm4736
p1@Gm8882
Mm9::chr6:132389732..132389736,- p@chr6:132389732..132389736
-
Mm9::chr6:132389759..132389787,- p@chr6:132389759..132389787
-
Mm9::chr6:41810304..41810307,+ p1@Sval2
Mm9::chr6:93765798..93765806,- p@chr6:93765798..93765806
-
Mm9::chr7:149024970..149024987,+ p1@Muc5b
Mm9::chr7:149030648..149030693,+ p@chr7:149030648..149030693
+
Mm9::chr7:149031277..149031282,+ p@chr7:149031277..149031282
+
Mm9::chr7:149050564..149050574,+ p@chr7:149050564..149050574
+
Mm9::chr7:31027882..31027890,- p2@Wdr62
Mm9::chr7:31027894..31027901,- p3@Wdr62
Mm9::chr7:31028518..31028554,- p@chr7:31028518..31028554
-
Mm9::chr7:31339960..31339971,+ +
p@chr7:31339960..31339971
Mm9::chr7:4915935..4915967,- p1@Sbk2
Mm9::chr7:4915970..4915988,- p3@Sbk2
Mm9::chr7:4915997..4916013,- p2@Sbk2
Mm9::chr7:51038197..51038202,+ p@chr7:51038197..51038202
+
Mm9::chr7:51270656..51270681,+ p@chr7:51270656..51270681
+
Mm9::chr8:112138317..112138321,+ p2@Pkd1l3
Mm9::chr8:15057149..15057160,+ p9@Myom2
Mm9::chr8:19197144..19197150,- p@chr8:19197144..19197150
-
Mm9::chr8:19198702..19198706,+ p1@Defb4
Mm9::chr8:27934890..27934902,- p@chr8:27934890..27934902
-
Mm9::chr8:74245929..74245933,- p10@Fcho1
Mm9::chr8:95903645..95903655,- p1@Ces1h
Mm9::chr8:95903662..95903669,- p2@Ces1h
Mm9::chr8:95903671..95903681,- p3@Ces1h
Mm9::chr8:95903716..95903724,- p4@Ces1h
Mm9::chr8:96661097..96661113,+ p1@Mt4
Mm9::chr9:109871536..109871541,+ p@chr9:109871536..109871541
+
Mm9::chr9:112129931..112129946,+ p1@ENSMUST00000161216
Mm9::chr9:112129947..112129965,+ p2@ENSMUST00000161216
Mm9::chr9:53698050..53698064,+ p1@Sln
Mm9::chr9:62513835..62513850,- p@chr9:62513835..62513850
-
Mm9::chr9:62513853..62513869,- p@chr9:62513853..62513869
-
Mm9::chr9:62513870..62513876,- p@chr9:62513870..62513876
-
Mm9::chr9:62513877..62513884,- p@chr9:62513877..62513884
-
Mm9::chr9:62513888..62513895,- p@chr9:62513888..62513895
-
Mm9::chrX:154140506..154140517,+ p8@Smpx
Mm9::chrX:160707431..160707454,+ p3@Pir
Mm9::chrX:54040978..54040989,+ p18@Fhl1
Mm9::chrX:70934920..70934962,- p@chrX:70934920..70934962
-


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


GO IDGO nameFDR corrected p-value
GO:0005200structural constituent of cytoskeleton7.3737477811178e-07
GO:0006941striated muscle contraction1.50004141068602e-06
GO:0005882intermediate filament1.50004141068602e-06
GO:0045111intermediate filament cytoskeleton1.50004141068602e-06
GO:0032982myosin filament1.50004141068602e-06
GO:0005863striated muscle thick filament1.50004141068602e-06
GO:0005859muscle myosin complex1.79681521810723e-06
GO:0044430cytoskeletal part1.89200161475689e-06
GO:0003012muscle system process2.06482693906102e-06
GO:0006936muscle contraction2.06482693906102e-06
GO:0016460myosin II complex2.07149551644975e-06
GO:0005856cytoskeleton3.01869986238872e-06
GO:0030017sarcomere1.76742392364845e-05
GO:0044449contractile fiber part2.05255791304866e-05
GO:0030016myofibril2.90995652226637e-05
GO:0043292contractile fiber3.11160074081959e-05
GO:0016459myosin complex0.000270248118320049
GO:0043232intracellular non-membrane-bound organelle0.000714526775871007
GO:0043228non-membrane-bound organelle0.000714526775871007
GO:0007010cytoskeleton organization and biogenesis0.00203011709043385
GO:0001533cornified envelope0.0207526420902453
GO:0015629actin cytoskeleton0.0219114963585475
GO:0050678regulation of epithelial cell proliferation0.0273525588712536
GO:0060023soft palate development0.0376439700112521
GO:0042922neuromedin U receptor binding0.0376439700112521
GO:0005155epidermal growth factor receptor activating ligand activity0.0376439700112521
GO:0050673epithelial cell proliferation0.0388280783388025



Relative expression of the co-expression cluster over median
Analyst:





Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset


uberon_data


Uber Anatomy
Ontology termp-valuen
tongue3.06e-231
gustatory system3.06e-231
future tongue3.06e-231
mouth2.42e-122
oral opening2.42e-122
stomodeum2.42e-122


TFBS overrepresentationSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.19.64327e-17
MA0004.10.350766
MA0006.10.000650369
MA0007.10.513715
MA0009.10.617693
MA0014.12.61415e-12
MA0017.10.337687
MA0019.10.656954
MA0024.10.305382
MA0025.10.165727
MA0027.11.07709
MA0028.14.37501e-05
MA0029.10.265631
MA0030.10.672603
MA0031.10.047353
MA0038.10.0585873
MA0040.11.27224
MA0041.10.119012
MA0042.10.00515965
MA0043.10.0165935
MA0046.10.475785
MA0048.10.0350239
MA0050.10.0227979
MA0051.10.200422
MA0052.11.69573
MA0055.10.398495
MA0056.10
MA0057.12.90251e-06
MA0058.10.41082
MA0059.10.00606517
MA0060.12.0085e-05
MA0061.10.00325088
MA0063.10
MA0066.10.684964
MA0067.10.565197
MA0068.10.00303443
MA0069.10.121917
MA0070.10.239261
MA0071.10.672145
MA0072.10.400255
MA0073.10
MA0074.10.106742
MA0076.10.00022083
MA0077.10.56185
MA0078.11.22801
MA0081.10.0113554
MA0083.10.627807
MA0084.10.68921
MA0087.10.785939
MA0088.10.026475
MA0089.10
MA0090.10.159361
MA0091.10.67888
MA0092.10.535272
MA0093.10.579655
MA0095.10
MA0098.10
MA0100.10.151828
MA0101.10.121747
MA0103.10.498482
MA0105.12.58782e-08
MA0106.10.598938
MA0107.10.11159
MA0108.26.15167
MA0109.10
MA0111.10.0854265
MA0113.10.486276
MA0114.11.08252
MA0115.10.0774601
MA0116.10.211104
MA0117.10.0619061
MA0119.10.42707
MA0122.10.1852
MA0124.10.215629
MA0125.10.633408
MA0130.10
MA0131.10.00422048
MA0132.10
MA0133.10
MA0135.10.238076
MA0136.10.0783512
MA0139.10.0943058
MA0140.10.0503676
MA0141.11.09037
MA0142.10.33129
MA0143.10.391923
MA0144.13.35532
MA0145.10.027258
MA0146.15.7139e-08
MA0147.10.0173374
MA0148.11.26451
MA0149.10.573094
MA0062.21.65605e-07
MA0035.20.0265249
MA0039.28.81579e-08
MA0138.20.820159
MA0002.21.42518
MA0137.21.23165
MA0104.20.00257961
MA0047.21.7147
MA0112.20.0102304
MA0065.20.0801524
MA0150.10.807046
MA0151.10
MA0152.10.181704
MA0153.10.0249221
MA0154.10.225325
MA0155.13.73317e-08
MA0156.10.0434999
MA0157.10.150904
MA0158.10
MA0159.10.272859
MA0160.10.717645
MA0161.10
MA0162.14.07525e-13
MA0163.12.57705e-06
MA0164.10.994853
MA0080.20.0777351
MA0018.20.089085
MA0099.22.282
MA0079.20
MA0102.20.281371
MA0258.10.556866
MA0259.13.07796e-07
MA0442.10