Personal tools

UBERON:0000978

From FANTOM5_SSTAR

Jump to: navigation, search

Name:leg
Namespace:FANTOM
Definition:"The portion of the hindlimb that contains both the stylopod and zeugopod." [Wikipedia:Leg#Limb]
Xrefs:
links:

BTO:0000721
EFO:0001411
EHDAA2:0000972
EHDAA:5151
EHDAA:6176
EHDAA:8289
EMAPA:17489
GAID:49
MA:0000047
MESH:A.01.378.610
OpenCyc:Mx4rvViYzZwpEbGdrcN5Y29ycA

VHOG:0000345
Synonyms: "lower extremity" RELATED [MESH:A.01.378.610]
"tetrapod leg" EXACT []
Comments:The term leg can mean: [1] an appendage on which an animal walks [2] the entire hindlimb of a tetrapod [3] the segment of a human leg between knee and ankle (cf FMA) [4] the region of a hindlimb include the stylopod and zeugopod, but excluding the autopod. We define this class as [4], and thus 'leg' is compltely analagous to 'arm'. For [1], see the class 'locomotive weight-bearing appendage'. For [2] we use 'hindlimb'. For [3] we use the less open to misinterpretation 'hindlimb zeugopod'. Editor note: currently declared as overlapping foot, as AOs disagree over whether some ankle parts are in the leg or foot
Alt_id: UBERON:FBbt_00004640-FMA_24979-MA_0000047-MIAA_0000095
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0006058(multi-limb segment region),UBERON:0008784(lower limb segment)
part_of:UBERON:0002103(hindlimb)



Children

part of:UBERON:0000376 (hindlimb stylopod),UBERON:0001383 (muscle of leg),UBERON:0001465 (knee),UBERON:0003569 (leg connective tissue),UBERON:0003823 (hindlimb zeugopod),UBERON:0004174 (leg joint),UBERON:0004466 (musculature of leg),UBERON:0005893 (leg bone)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000978 (leg), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_43f5e3fee8efef591cdda7625cb68fb6p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_43f5e3fee8efef591cdda7625cb68fb6p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_43f5e3fee8efef591cdda7625cb68fb6p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_43f5e3fee8efef591cdda7625cb68fb6p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_43f5e3fee8efef591cdda7625cb68fb6p@chr7:128483294..128483304, +
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_a205c5a72d97c26fa1778dac8162fd38p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_a205c5a72d97c26fa1778dac8162fd38p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_a205c5a72d97c26fa1778dac8162fd38p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_a205c5a72d97c26fa1778dac8162fd38p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_a205c5a72d97c26fa1778dac8162fd38p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_a205c5a72d97c26fa1778dac8162fd38p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_a205c5a72d97c26fa1778dac8162fd38p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_a205c5a72d97c26fa1778dac8162fd38+, p@chr5:137206180..137206187
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_a205c5a72d97c26fa1778dac8162fd38p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_a205c5a72d97c26fa1778dac8162fd38p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_a205c5a72d97c26fa1778dac8162fd38p7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_a205c5a72d97c26fa1778dac8162fd38p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_a205c5a72d97c26fa1778dac8162fd38p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_a205c5a72d97c26fa1778dac8162fd38p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_a205c5a72d97c26fa1778dac8162fd38p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_a205c5a72d97c26fa1778dac8162fd38p54@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_a205c5a72d97c26fa1778dac8162fd38p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_a205c5a72d97c26fa1778dac8162fd38p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_a205c5a72d97c26fa1778dac8162fd38p93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_a205c5a72d97c26fa1778dac8162fd38p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_a205c5a72d97c26fa1778dac8162fd38p46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_a205c5a72d97c26fa1778dac8162fd38p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_a205c5a72d97c26fa1778dac8162fd38p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_a205c5a72d97c26fa1778dac8162fd38p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_a205c5a72d97c26fa1778dac8162fd38p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_a205c5a72d97c26fa1778dac8162fd38p77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_a205c5a72d97c26fa1778dac8162fd38p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_a205c5a72d97c26fa1778dac8162fd38p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_a205c5a72d97c26fa1778dac8162fd38p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_a205c5a72d97c26fa1778dac8162fd38p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_a205c5a72d97c26fa1778dac8162fd38p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_a205c5a72d97c26fa1778dac8162fd38p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_a205c5a72d97c26fa1778dac8162fd38p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_a205c5a72d97c26fa1778dac8162fd38p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_a205c5a72d97c26fa1778dac8162fd38p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_a205c5a72d97c26fa1778dac8162fd38p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_a205c5a72d97c26fa1778dac8162fd38p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_a205c5a72d97c26fa1778dac8162fd38p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_a205c5a72d97c26fa1778dac8162fd38p108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_a205c5a72d97c26fa1778dac8162fd38p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_a205c5a72d97c26fa1778dac8162fd38p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_a205c5a72d97c26fa1778dac8162fd38p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_a205c5a72d97c26fa1778dac8162fd38p@chr22:36000901..36000903, -
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_87071814312013c7792190cdab31f7eap@chr3:69168368..69168389, -
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_87071814312013c7792190cdab31f7eap73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr6:125535391..125535409,+#_87071814312013c7792190cdab31f7eap@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_87071814312013c7792190cdab31f7eap@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_87071814312013c7792190cdab31f7eap@chr5:95180155..95180172, +
2.55e-98FFCP PHASE1:Hg19::chr12:69653866..69653876,+#_87071814312013c7792190cdab31f7eap@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr12:122884464..122884467,-#_87071814312013c7792190cdab31f7eap38@CLIP1
2.55e-98FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_87071814312013c7792190cdab31f7eap@chr3:35732964..35732965, +
2.55e-98FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_87071814312013c7792190cdab31f7ea-, p@chr10:29918007..29918031
2.55e-98FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_87071814312013c7792190cdab31f7eap38@CLIP1
2.55e-98FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_87071814312013c7792190cdab31f7eap@chr10:97037060..97037066, -
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_87071814312013c7792190cdab31f7eap@chr2:179656442..179656451, -
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_87071814312013c7792190cdab31f7eap27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_87071814312013c7792190cdab31f7eap@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_87071814312013c7792190cdab31f7eap@chr12:102079632..102079647, -
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_87071814312013c7792190cdab31f7eap@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_87071814312013c7792190cdab31f7eap@chr12:102079632..102079647, -
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_87071814312013c7792190cdab31f7eap@chr12:69653866..69653876, +
2.55e-98FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_87071814312013c7792190cdab31f7eap@chr5:95180155..95180172, +
2.55e-98FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_87071814312013c7792190cdab31f7eap73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_87071814312013c7792190cdab31f7eap@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_87071814312013c7792190cdab31f7ea+, p@chr22:26299595..26299605
2.55e-98FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_87071814312013c7792190cdab31f7eap@chr3:35732964..35732965, +
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_87071814312013c7792190cdab31f7eap@chr21:47769234..47769239, +
2.55e-98FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_87071814312013c7792190cdab31f7eap@chr2:152566311..152566321, -
2.55e-98FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_87071814312013c7792190cdab31f7eap@chr22:26299595..26299605, +