Personal tools

UBERON:0001003

From FANTOM5_SSTAR

Jump to: navigation, search

Name:skin epidermis
Namespace:FANTOM
Definition:"The outer layer of the skin[WP]. cellular, multilayered epithelium derived from the ectoderm[ZFA]." [ISBN10:0073040584, Wikipedia:Epidermis_(skin)]
Xrefs:
links:

AAO:0000143
BTO:0000404
EFO:0000954
EHDAA2:0001844
EMAPA:17525
EV:0100153
FMA:70596
GAID:932
MA:0000153
MAT:0000154
MESH:A.10.272.497
MIAA:0000154
ncithesaurus:Epidermis
SCTID:361694003
TAO:0000105
VHOG:0000077
XAO:0000028

ZFA:0000105
Synonyms: "adult epidermis" EXACT []
"skin" BROAD []
"vertebrate epidermis" EXACT []
Comments:Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. In terrestrial vertebrates the epidermis often forms an outer keratinized or cornified layer, the stratum corneum. Interaction between the epideris and dermis gives rise to feathers (birds), hair and mammary glands (mammals), teeth and scales (placoid: chondrichthyans; cosmoids, ganoid, cycloid in bony fishes).
Alt_id: UBERON:FBbt_00004993-FBbt_00005401-FMA_70596-MA_0000153-MIAA_0000154-WBbt_0005733-XAO_0000028-ZFA_0000105
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0007376(outer epithelium),UBERON:3000961(external integument structure)
develops_from:UBERON:0007383(enveloping layer of ectoderm)
part_of:UBERON:0002097(skin of body)



Children

is a:FF:0011174 (Skin - armpit hair follicle),FF:0011178 (Skin - torso),FF:0011459 (tongue epidermis (vallate papillae)- donor1)
derives from:FF:0100849 (melanoma cell line sample)
develops from:UBERON:0005086 (hair follicle placode)
part of:CL:0000312 (keratinocyte),UBERON:0001705 (nail),UBERON:0001820 (sweat gland),UBERON:0001821 (sebaceous gland),UBERON:0002025 (stratum basale of epidermis),UBERON:0002073 (hair follicle),UBERON:0004882 (eponychium),UBERON:0007771 (epidermis gland),UBERON:0009564 (distal limb integumentary appendage),CL:1000428 (stem cell of epidermis)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001003 (skin epidermis), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.4e-86FFCP PHASE1:Mm9::chr4:113836063..113836075,+#_d815a566a39f91845066641869350398p1@Skint11
1.4e-86FFCP PHASE2:Mm9::chr5:137057540..137057550,-#_d815a566a39f91845066641869350398p@chr5:137057540..137057550, -
1.4e-86FFCP PHASE1:Mm9::chr13:113381448..113381495,-#_d815a566a39f91845066641869350398-, p@chr13:113381448..113381495
1.4e-86FFCP PHASE1:Mm9::chr5:137057540..137057550,-#_d815a566a39f91845066641869350398p@chr5:137057540..137057550, -
1.4e-86FFCP PHASE2:Mm9::chr4:113836063..113836075,+#_d815a566a39f91845066641869350398p1@Skint11
1.4e-86FFCP PHASE2:Mm9::chr13:113381448..113381495,-#_d815a566a39f91845066641869350398p@chr13:113381448..113381495, -
1.4e-86FFCP PHASE2:Mm9::chr11:94981134..94981147,+#_d815a566a39f91845066641869350398p2@Dlx3
1.4e-86FFCP PHASE1:Mm9::chr1:191609138..191609151,+#_d815a566a39f91845066641869350398p@chr1:191609138..191609151, +
1.4e-86FFCP PHASE1:Mm9::chr11:94981134..94981147,+#_d815a566a39f91845066641869350398p2@Dlx3
1.4e-86FFCP PHASE1:Mm9::chr15:101593988..101593997,-#_d815a566a39f91845066641869350398p1@Krt74
1.4e-86FFCP PHASE1:Mm9::chr11:99227413..99227429,-#_d815a566a39f91845066641869350398p@chr11:99227413..99227429, -
1.4e-86FFCP PHASE1:Mm9::chr4:138313406..138313411,-#_d815a566a39f91845066641869350398p2@Pla2g2f
1.4e-86FFCP PHASE2:Mm9::chr11:36246521..36246530,-#_d815a566a39f91845066641869350398p@chr11:36246521..36246530, -
1.4e-86FFCP PHASE2:Mm9::chr11:99227413..99227429,-#_d815a566a39f91845066641869350398p@chr11:99227413..99227429, -
1.4e-86FFCP PHASE2:Mm9::chr4:138313406..138313411,-#_d815a566a39f91845066641869350398p2@Pla2g2f
1.4e-86FFCP PHASE1:Mm9::chr4:113836042..113836053,+#_d815a566a39f91845066641869350398p2@Skint11
1.4e-86FFCP PHASE2:Mm9::chr1:191609138..191609151,+#_d815a566a39f91845066641869350398p@chr1:191609138..191609151, +
1.4e-86FFCP PHASE2:Mm9::chr15:101593988..101593997,-#_d815a566a39f91845066641869350398p1@Krt74
1.4e-86FFCP PHASE2:Mm9::chr4:113836042..113836053,+#_d815a566a39f91845066641869350398p2@Skint11
1.4e-86FFCP PHASE1:Mm9::chr11:36246521..36246530,-#_d815a566a39f91845066641869350398p@chr11:36246521..36246530, -
1.07e-72FFCP PHASE2:Mm9::chr11:99207849..99207853,-#_35c72a50cca2f8fa26f37b55e9e70114p@chr11:99207849..99207853, -
1.07e-72FFCP PHASE1:Mm9::chr15:83953604..83953633,-#_35c72a50cca2f8fa26f37b55e9e70114p1@Pnpla5
1.07e-72FFCP PHASE2:Mm9::chr7:127260268..127260277,+#_35c72a50cca2f8fa26f37b55e9e70114p@chr7:127260268..127260277, +
1.07e-72FFCP PHASE2:Mm9::chr5:137057441..137057450,-#_35c72a50cca2f8fa26f37b55e9e70114p@chr5:137057441..137057450, -
1.07e-72FFCP PHASE2:Mm9::chr3:90343597..90343613,+#_35c72a50cca2f8fa26f37b55e9e70114p@chr3:90343597..90343613, +
1.07e-72FFCP PHASE1:Mm9::chr1:133938531..133938534,-#_35c72a50cca2f8fa26f37b55e9e70114p6@Mfsd4
1.07e-72FFCP PHASE2:Mm9::chr1:133938531..133938534,-#_35c72a50cca2f8fa26f37b55e9e70114p6@Mfsd4
1.07e-72FFCP PHASE2:Mm9::chr5:137057490..137057506,-#_35c72a50cca2f8fa26f37b55e9e70114p@chr5:137057490..137057506, -
1.07e-72FFCP PHASE1:Mm9::chr1:46949894..46949911,-#_35c72a50cca2f8fa26f37b55e9e70114p@chr1:46949894..46949911, -
1.07e-72FFCP PHASE1:Mm9::chr5:137057441..137057450,-#_35c72a50cca2f8fa26f37b55e9e70114p@chr5:137057441..137057450, -
1.07e-72FFCP PHASE1:Mm9::chr7:127260268..127260277,+#_35c72a50cca2f8fa26f37b55e9e70114p@chr7:127260268..127260277, +
1.07e-72FFCP PHASE2:Mm9::chr15:83953604..83953633,-#_35c72a50cca2f8fa26f37b55e9e70114p1@Pnpla5
1.07e-72FFCP PHASE2:Mm9::chr7:97432305..97432311,+#_35c72a50cca2f8fa26f37b55e9e70114p@chr7:97432305..97432311, +
1.07e-72FFCP PHASE1:Mm9::chr7:97432305..97432311,+#_35c72a50cca2f8fa26f37b55e9e70114p@chr7:97432305..97432311, +
1.07e-72FFCP PHASE1:Mm9::chr11:99207849..99207853,-#_35c72a50cca2f8fa26f37b55e9e70114p@chr11:99207849..99207853, -
1.07e-72FFCP PHASE1:Mm9::chr3:90343597..90343613,+#_35c72a50cca2f8fa26f37b55e9e70114p@chr3:90343597..90343613, +
1.07e-72FFCP PHASE1:Mm9::chr5:137057490..137057506,-#_35c72a50cca2f8fa26f37b55e9e70114p@chr5:137057490..137057506, -
1.07e-72FFCP PHASE2:Mm9::chr1:46949894..46949911,-#_35c72a50cca2f8fa26f37b55e9e70114p@chr1:46949894..46949911, -
1.5e-72FFCP PHASE1:Mm9::chr6:97778311..97778326,+#_048f4f3e503aa29828d3ad94c96cef09p@chr6:97778311..97778326, +
1.5e-72FFCP PHASE2:Mm9::chr10:66991117..66991146,+#_048f4f3e503aa29828d3ad94c96cef09p@chr10:66991117..66991146, +
1.5e-72FFCP PHASE2:Mm9::chr10:43724117..43724131,-#_048f4f3e503aa29828d3ad94c96cef09p@chr10:43724117..43724131, -
1.5e-72FFCP PHASE1:Mm9::chr3:138004932..138004945,+#_048f4f3e503aa29828d3ad94c96cef09p@chr3:138004932..138004945, +
1.5e-72FFCP PHASE2:Mm9::chr1:37973330..37973344,-#_048f4f3e503aa29828d3ad94c96cef09p1@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr15:25672069..25672077,+#_048f4f3e503aa29828d3ad94c96cef09p25@Myo10
1.5e-72FFCP PHASE1:Mm9::chr10:66991117..66991146,+#_048f4f3e503aa29828d3ad94c96cef09p@chr10:66991117..66991146, +
1.5e-72FFCP PHASE1:Mm9::chr13:112045218..112045226,+#_048f4f3e503aa29828d3ad94c96cef09p1@Actbl2
1.5e-72FFCP PHASE2:Mm9::chr6:134595955..134595965,-#_048f4f3e503aa29828d3ad94c96cef09p@chr6:134595955..134595965, -
1.5e-72FFCP PHASE1:Mm9::chr10:43724117..43724131,-#_048f4f3e503aa29828d3ad94c96cef09p@chr10:43724117..43724131, -
1.5e-72FFCP PHASE2:Mm9::chr6:97778311..97778326,+#_048f4f3e503aa29828d3ad94c96cef09p@chr6:97778311..97778326, +
1.5e-72FFCP PHASE2:Mm9::chr3:138004932..138004945,+#_048f4f3e503aa29828d3ad94c96cef09p@chr3:138004932..138004945, +
1.5e-72FFCP PHASE2:Mm9::chr13:112045218..112045226,+#_048f4f3e503aa29828d3ad94c96cef09p1@Actbl2
1.5e-72FFCP PHASE1:Mm9::chr1:37973257..37973271,-#_048f4f3e503aa29828d3ad94c96cef09p2@Lyg2
1.5e-72FFCP PHASE1:Mm9::chr15:25672069..25672077,+#_048f4f3e503aa29828d3ad94c96cef09p25@Myo10
1.5e-72FFCP PHASE1:Mm9::chr6:134595955..134595965,-#_048f4f3e503aa29828d3ad94c96cef09p@chr6:134595955..134595965, -
1.5e-72FFCP PHASE1:Mm9::chr1:37973330..37973344,-#_048f4f3e503aa29828d3ad94c96cef09p1@Lyg2
1.5e-72FFCP PHASE2:Mm9::chr1:37973257..37973271,-#_048f4f3e503aa29828d3ad94c96cef09p2@Lyg2
2.1e-72FFCP PHASE2:Mm9::chr1:89485356..89485361,+#_23d0dca5fc094d401a4162eead8f3fbap@chr1:89485356..89485361, +
2.1e-72FFCP PHASE2:Mm9::chr4:82496625..82496637,-#_23d0dca5fc094d401a4162eead8f3fbap6@Zdhhc21
2.1e-72FFCP PHASE1:Mm9::chr1:89485356..89485361,+#_23d0dca5fc094d401a4162eead8f3fbap@chr1:89485356..89485361, +
2.1e-72FFCP PHASE2:Mm9::chr4:111707315..111707319,+#_23d0dca5fc094d401a4162eead8f3fbap@chr4:111707315..111707319, +
2.1e-72FFCP PHASE1:Mm9::chr4:82496625..82496637,-#_23d0dca5fc094d401a4162eead8f3fbap6@Zdhhc21
2.1e-72FFCP PHASE2:Mm9::chr7:117436977..117436981,-#_23d0dca5fc094d401a4162eead8f3fbap@chr7:117436977..117436981, -
2.1e-72FFCP PHASE1:Mm9::chr7:117436977..117436981,-#_23d0dca5fc094d401a4162eead8f3fbap@chr7:117436977..117436981, -
2.1e-72FFCP PHASE1:Mm9::chr4:111707315..111707319,+#_23d0dca5fc094d401a4162eead8f3fbap@chr4:111707315..111707319, +
4.13e-72FFCP PHASE1:Mm9::chr4:113672105..113672116,-#_75881265724b5394dfcedbcefb0c18c0p1@Skint5
4.13e-72FFCP PHASE2:Mm9::chr4:113672105..113672116,-#_75881265724b5394dfcedbcefb0c18c0p1@Skint5
1.65e-69FFCP PHASE2:Mm9::chr11:115168521..115168541,+#_47627590e07b81024b47854cbf08cad9p1@Otop2
1.65e-69FFCP PHASE2:Mm9::chr6:97778346..97778356,+#_47627590e07b81024b47854cbf08cad9p@chr6:97778346..97778356, +
1.65e-69FFCP PHASE1:Mm9::chr3:93248697..93248704,+#_47627590e07b81024b47854cbf08cad9p@chr3:93248697..93248704, +
1.65e-69FFCP PHASE2:Mm9::chr16:56831979..56831988,-#_47627590e07b81024b47854cbf08cad9p13@Tmem45a
1.65e-69FFCP PHASE1:Mm9::chr4:144311356..144311370,-#_47627590e07b81024b47854cbf08cad9p2@Gm13178
1.65e-69FFCP PHASE2:Mm9::chr3:93247552..93247564,+#_47627590e07b81024b47854cbf08cad9p@chr3:93247552..93247564, +
1.65e-69FFCP PHASE1:Mm9::chr8:63958211..63958219,+#_47627590e07b81024b47854cbf08cad9p@chr8:63958211..63958219, +
1.65e-69FFCP PHASE1:Mm9::chr3:93249140..93249149,+#_47627590e07b81024b47854cbf08cad9p@chr3:93249140..93249149, +
1.65e-69FFCP PHASE1:Mm9::chr5:81472249..81472294,+#_47627590e07b81024b47854cbf08cad9p@chr5:81472249..81472294, +
1.65e-69FFCP PHASE1:Mm9::chr9:67169769..67169780,-#_47627590e07b81024b47854cbf08cad9p@chr9:67169769..67169780, -
1.65e-69FFCP PHASE2:Mm9::chr15:101770858..101770865,-#_47627590e07b81024b47854cbf08cad9p2@Krt79
1.65e-69FFCP PHASE2:Mm9::chr11:99913595..99913606,+#_47627590e07b81024b47854cbf08cad9p1@ENSMUST00000136820, p1@uc007lke.1
1.65e-69FFCP PHASE1:Mm9::chr3:93249391..93249400,+#_47627590e07b81024b47854cbf08cad9p@chr3:93249391..93249400, +
1.65e-69FFCP PHASE1:Mm9::chr3:93247552..93247564,+#_47627590e07b81024b47854cbf08cad9p@chr3:93247552..93247564, +
1.65e-69FFCP PHASE1:Mm9::chr18:25099958..25099967,+#_47627590e07b81024b47854cbf08cad9p@chr18:25099958..25099967, +
1.65e-69FFCP PHASE1:Mm9::chr19:59989963..59989986,-#_47627590e07b81024b47854cbf08cad9p@chr19:59989963..59989986, -
1.65e-69FFCP PHASE2:Mm9::chr17:14011908..14011919,+#_47627590e07b81024b47854cbf08cad9p13@Mllt4
1.65e-69FFCP PHASE2:Mm9::chr4:82496602..82496610,-#_47627590e07b81024b47854cbf08cad9p8@Zdhhc21
1.65e-69FFCP PHASE2:Mm9::chr9:67169769..67169780,-#_47627590e07b81024b47854cbf08cad9p@chr9:67169769..67169780, -
1.65e-69FFCP PHASE1:Mm9::chr5:75107109..75107125,-#_47627590e07b81024b47854cbf08cad9-, p@chr5:75107109..75107125
1.65e-69FFCP PHASE2:Mm9::chr19:25196775..25196781,+#_47627590e07b81024b47854cbf08cad9p@chr19:25196775..25196781, +
1.65e-69FFCP PHASE1:Mm9::chr1:129125186..129125194,+#_47627590e07b81024b47854cbf08cad9p@chr1:129125186..129125194, +
1.65e-69FFCP PHASE2:Mm9::chr5:75107109..75107125,-#_47627590e07b81024b47854cbf08cad9p@chr5:75107109..75107125, -
1.65e-69FFCP PHASE2:Mm9::chr9:43876286..43876293,+#_47627590e07b81024b47854cbf08cad9p@chr9:43876286..43876293, +
1.65e-69FFCP PHASE2:Mm9::chr3:93249140..93249149,+#_47627590e07b81024b47854cbf08cad9p@chr3:93249140..93249149, +
1.65e-69FFCP PHASE1:Mm9::chr18:20469239..20469258,+#_47627590e07b81024b47854cbf08cad9p2@Dsg1a
1.65e-69FFCP PHASE1:Mm9::chr11:99913595..99913606,+#_47627590e07b81024b47854cbf08cad9p1@ENSMUST00000136820, p1@uc007lke.1
1.65e-69FFCP PHASE1:Mm9::chr6:97778346..97778356,+#_47627590e07b81024b47854cbf08cad9p@chr6:97778346..97778356, +
1.65e-69FFCP PHASE1:Mm9::chr16:56831943..56831948,-#_47627590e07b81024b47854cbf08cad9p14@Tmem45a
1.65e-69FFCP PHASE1:Mm9::chr11:95086849..95086855,-#_47627590e07b81024b47854cbf08cad9p3@ENSMUST00000150818
1.65e-69FFCP PHASE2:Mm9::chr19:59989963..59989986,-#_47627590e07b81024b47854cbf08cad9p@chr19:59989963..59989986, -
1.65e-69FFCP PHASE2:Mm9::chr2:129949046..129949050,+#_47627590e07b81024b47854cbf08cad9p2@Tgm6
1.65e-69FFCP PHASE1:Mm9::chr3:93249466..93249478,+#_47627590e07b81024b47854cbf08cad9p@chr3:93249466..93249478, +
1.65e-69FFCP PHASE1:Mm9::chr4:135527809..135527823,-#_47627590e07b81024b47854cbf08cad9p4@Lypla2










Property "Property value" (as page type) with input value "UBPROP:0000001 "A cellular, multilayered epithelium derived from the ectoderm. Zebrafish epidermis consists only of living cells unlike terrestrial vertebrates in which dead, keratinized cells are present. Le Guellec et al, 2004.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000001 "The outer epithelial layer of the external integument of the body that is derived from the embryonic epiblast.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process., Property "Property value" (as page type) with input value "UBPROP:0000002 "relationship loss: subclass external integument structures (AAO:0000961)[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.