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UBERON:0001876

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Name:amygdala
Namespace:FANTOM
Definition:"Subdivision of basal ganglion of telencephalon which is an almond-shaped gray mass in the dorsomedial part of the temporal lobe[FMA]" [FMA:61841, Wikipedia:Amygdala]
Xrefs:
links:

BM:Tel-Am
BTO:0001042
EFO:0000252
EV:0100189
EV:0100190
FMA:61841
GAID:616
[ Amyg.png Amyg.png]
[ 200px-Amyg.png 200px-Amyg.png]
MA:0000887
MAT:0000289
MESH:A.08.186.211.577.090
MIAA:0000289
ncithesaurus:Amygdala
NIF_GrossAnatomy:birnlex_1241
OpenCyc:Mx4rwJC_2ZwpEbGdrcN5Y29ycA

VHOG:0001277
Synonyms: "amygdaloid area" RELATED []
"amygdaloid body" EXACT []
"amygdaloid complex" EXACT [NIF_GrossAnatomy:birnlex_1241]
"amygdaloid nuclear complex" EXACT []
"amygdaloid nuclear group" RELATED [BTO:0001042]
"amygdaloid nuclear groups" EXACT []
"archistriatum" EXACT []
"corpus amygdaloideum" RELATED [BTO:0001042]
"corpus amygdaloideum" RELATED LATIN [Wikipedia:Amygdala]
"nucleus amygdalae" RELATED [BTO:0001042]
Comments:AO notes: MA and FMA differ on relationship to basal ganglion. The FMA text def suggests a subdivision, but it is classified as a subtype
Alt_id: UBERON:FMA_61841-MA_0000887-MIAA_0000289
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002420(basal ganglion),UBERON:0016538(cortex of temporal lobe)
part_of:UBERON:0000349(limbic system),UBERON:0001869(cerebral hemisphere),UBERON:0001871(temporal lobe)



Children

is a:FF:10360-105E9 (amygdala, newborn, donor10223)
derives from:FF:0010151 (human amygdala - adult donor sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001876 (amygdala), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
4.61e-131FFCP PHASE2:Hg19::chr9:34502907..34502912,-#_06d43d3a78b82e1d2bf4b25e4802638ap@chr9:34502907..34502912, -
4.61e-131FFCP PHASE1:Hg19::chr9:34502907..34502912,-#_06d43d3a78b82e1d2bf4b25e4802638ap@chr9:34502907..34502912, -
4.61e-131FFCP PHASE2:Hg19::chr8:54745692..54745698,-#_06d43d3a78b82e1d2bf4b25e4802638ap11@ATP6V1H
4.61e-131FFCP PHASE1:Hg19::chr8:54745692..54745698,-#_06d43d3a78b82e1d2bf4b25e4802638ap11@ATP6V1H
1.75e-130FFCP PHASE2:Hg19::chr6:1035766..1035777,+#_fd548d3fe537643d37b58265af453cd9p@chr6:1035766..1035777, +
1.75e-130FFCP PHASE1:Hg19::chr6:1035766..1035777,+#_fd548d3fe537643d37b58265af453cd9p@chr6:1035766..1035777, +
1.56e-79FFCP PHASE1:Hg19::chr4:118735142..118735153,-#_e08f2b1e799c2db1f81135b800d33d91p@chr4:118735142..118735153, -
1.56e-79FFCP PHASE2:Hg19::chr4:118735142..118735153,-#_e08f2b1e799c2db1f81135b800d33d91p@chr4:118735142..118735153, -
2.34e-79FFCP PHASE2:Hg19::chr11:74047383..74047406,-#_19c691dab406fd324c5364db67158b16p@chr11:74047383..74047406, -
2.34e-79FFCP PHASE1:Hg19::chr11:74047383..74047406,-#_19c691dab406fd324c5364db67158b16p@chr11:74047383..74047406, -
1.16e-78FFCP PHASE1:Hg19::chr3:132976005..132976010,-#_2f4d9aaad96441df33b1c87896573bd2p2@ENST00000505721
1.16e-78FFCP PHASE2:Hg19::chr3:132976005..132976010,-#_2f4d9aaad96441df33b1c87896573bd2p2@ENST00000505721
2.84e-66FFCP PHASE1:Hg19::chr15:40582949..40582989,+#_e771b4986817677721234a8c1514080dp@chr15:40582949..40582989, +
2.84e-66FFCP PHASE2:Hg19::chr12:81992190..81992193,-#_e771b4986817677721234a8c1514080dp20@PPFIA2
2.84e-66FFCP PHASE2:Hg19::chr15:40582949..40582989,+#_e771b4986817677721234a8c1514080dp@chr15:40582949..40582989, +
2.84e-66FFCP PHASE1:Hg19::chr12:81992190..81992193,-#_e771b4986817677721234a8c1514080dp20@PPFIA2
5.53e-66FFCP PHASE1:Hg19::chr10:106423509..106423521,+#_36446c2fbf7502c8f90c76b7c0392f31p@chr10:106423509..106423521, +
5.53e-66FFCP PHASE2:Hg19::chr10:106423509..106423521,+#_36446c2fbf7502c8f90c76b7c0392f31p@chr10:106423509..106423521, +
1.13e-57FFCP PHASE2:Hg19::chr1:20813796..20813807,-#_0375e5bc0dfbf040666b41d29a7dfdc8-, p@chr1:20813796..20813807
1.13e-57FFCP PHASE1:Hg19::chr1:20813796..20813807,-#_0375e5bc0dfbf040666b41d29a7dfdc8p@chr1:20813796..20813807, -
6.36e-57FFCP PHASE2:Hg19::chr17:49500350..49500395,+#_317b30fa0fc63b1741c6aa5363290220p@chr17:49500350..49500395, +
6.36e-57FFCP PHASE1:Hg19::chr17:49500350..49500395,+#_317b30fa0fc63b1741c6aa5363290220p@chr17:49500350..49500395, +
1.13e-56FFCP PHASE1:Hg19::chr16:61719084..61719087,-#_ae288ac728861114bac4ba999f56d1bep@chr16:61719084..61719087, -
1.13e-56FFCP PHASE2:Hg19::chr16:61719084..61719087,-#_ae288ac728861114bac4ba999f56d1bep@chr16:61719084..61719087, -
8.82e-51FFCP PHASE1:Hg19::chr8:117658838..117658848,-#_86c6804d31a5e724be02ca8d4185cc74p@chr8:117658838..117658848, -
8.82e-51FFCP PHASE2:Hg19::chr1:62439037..62439047,+#_86c6804d31a5e724be02ca8d4185cc74p13@INADL
8.82e-51FFCP PHASE2:Hg19::chr8:117658838..117658848,-#_86c6804d31a5e724be02ca8d4185cc74-, p@chr8:117658838..117658848
8.82e-51FFCP PHASE1:Hg19::chr13:101712292..101712306,-#_86c6804d31a5e724be02ca8d4185cc74p@chr13:101712292..101712306, -
8.82e-51FFCP PHASE1:Hg19::chr1:62439037..62439047,+#_86c6804d31a5e724be02ca8d4185cc74p13@INADL
8.82e-51FFCP PHASE2:Hg19::chr13:101712292..101712306,-#_86c6804d31a5e724be02ca8d4185cc74p@chr13:101712292..101712306, -
1.14e-50FFCP PHASE2:Hg19::chr8:132052458..132052469,-#_861bbde162451cf5b884392749825520p4@ADCY8
1.14e-50FFCP PHASE1:Hg19::chr8:132052458..132052469,-#_861bbde162451cf5b884392749825520p4@ADCY8
2.42e-50FFCP PHASE1:Hg19::chr4:46391569..46391580,-#_6d68f5ef5f4e690be238abc8715c9290p17@GABRA2
2.42e-50FFCP PHASE2:Hg19::chr4:46391569..46391580,-#_6d68f5ef5f4e690be238abc8715c9290p17@GABRA2
2.74e-50FFCP PHASE1:Hg19::chr11:63486158..63486182,+#_efb2331a83b9eab944fa20d91e2bc566p@chr11:63486158..63486182, +
2.74e-50FFCP PHASE1:Hg19::chr16:5945370..5945377,+#_efb2331a83b9eab944fa20d91e2bc566p@chr16:5945370..5945377, +
2.74e-50FFCP PHASE2:Hg19::chr16:5945370..5945377,+#_efb2331a83b9eab944fa20d91e2bc566+, p@chr16:5945370..5945377
2.74e-50FFCP PHASE1:Hg19::chr4:46247082..46247090,-#_efb2331a83b9eab944fa20d91e2bc566p@chr4:46247082..46247090, -
2.74e-50FFCP PHASE2:Hg19::chr11:63486158..63486182,+#_efb2331a83b9eab944fa20d91e2bc566p@chr11:63486158..63486182, +
2.74e-50FFCP PHASE2:Hg19::chr4:46247082..46247090,-#_efb2331a83b9eab944fa20d91e2bc566-, p@chr4:46247082..46247090
4.0e-50FFCP PHASE1:Hg19::chr12:133195356..133195367,+#_c3d8492818b0e69d9ccd08682c46e520p3@P2RX2
4.0e-50FFCP PHASE2:Hg19::chr12:133195356..133195367,+#_c3d8492818b0e69d9ccd08682c46e520p3@P2RX2
4.52e-50FFCP PHASE2:Hg19::chr16:24372933..24372944,+#_af81371bc9b9b6fe0d284a5cc1edb4f8p@chr16:24372933..24372944, +
4.52e-50FFCP PHASE1:Hg19::chr16:24372933..24372944,+#_af81371bc9b9b6fe0d284a5cc1edb4f8p@chr16:24372933..24372944, +
4.52e-50FFCP PHASE1:Hg19::chr5:161530948..161530957,+#_af81371bc9b9b6fe0d284a5cc1edb4f8p@chr5:161530948..161530957, +
4.52e-50FFCP PHASE1:Hg19::chr1:181361950..181361956,+#_af81371bc9b9b6fe0d284a5cc1edb4f8p@chr1:181361950..181361956, +
4.52e-50FFCP PHASE2:Hg19::chr6:132723206..132723217,-#_af81371bc9b9b6fe0d284a5cc1edb4f8p@chr6:132723206..132723217, -
4.52e-50FFCP PHASE1:Hg19::chr4:160189108..160189117,+#_af81371bc9b9b6fe0d284a5cc1edb4f8p44@RAPGEF2
4.52e-50FFCP PHASE2:Hg19::chr5:161530948..161530957,+#_af81371bc9b9b6fe0d284a5cc1edb4f8p@chr5:161530948..161530957, +
4.52e-50FFCP PHASE1:Hg19::chr20:55841819..55841842,+#_af81371bc9b9b6fe0d284a5cc1edb4f8p2@ENST00000412321, p2@uc010gir.1
4.52e-50FFCP PHASE2:Hg19::chr4:160189108..160189117,+#_af81371bc9b9b6fe0d284a5cc1edb4f8p44@RAPGEF2
4.52e-50FFCP PHASE2:Hg19::chr1:181361950..181361956,+#_af81371bc9b9b6fe0d284a5cc1edb4f8p@chr1:181361950..181361956, +
4.52e-50FFCP PHASE2:Hg19::chr20:23357397..23357407,-#_af81371bc9b9b6fe0d284a5cc1edb4f8p@chr20:23357397..23357407, -
4.52e-50FFCP PHASE1:Hg19::chr6:132723206..132723217,-#_af81371bc9b9b6fe0d284a5cc1edb4f8p@chr6:132723206..132723217, -
4.52e-50FFCP PHASE1:Hg19::chr20:23357397..23357407,-#_af81371bc9b9b6fe0d284a5cc1edb4f8p@chr20:23357397..23357407, -
4.52e-50FFCP PHASE1:Hg19::chr7:44282202..44282211,-#_af81371bc9b9b6fe0d284a5cc1edb4f8p22@CAMK2B
4.52e-50FFCP PHASE2:Hg19::chr7:44282202..44282211,-#_af81371bc9b9b6fe0d284a5cc1edb4f8p22@CAMK2B
4.52e-50FFCP PHASE2:Hg19::chr20:55841819..55841842,+#_af81371bc9b9b6fe0d284a5cc1edb4f8p2@ENST00000412321, p2@uc010gir.1
5.15e-50FFCP PHASE2:Hg19::chr18:11751466..11751475,+#_1c1af045b3a57264afcea3c833396e6ep22@GNAL
5.15e-50FFCP PHASE1:Hg19::chr18:11751466..11751475,+#_1c1af045b3a57264afcea3c833396e6ep22@GNAL
2.04e-45FFCP PHASE2:Hg19::chr9:95569585..95569596,+#_7a19662e7712915c30dc9ae9ae836bf9p@chr9:95569585..95569596, +
2.04e-45FFCP PHASE1:Hg19::chr9:95569585..95569596,+#_7a19662e7712915c30dc9ae9ae836bf9p@chr9:95569585..95569596, +
3.19e-45FFCP PHASE1:Hg19::chrX:21666936..21666940,+#_a396ba09af8d7717d5580346449f1eacp@chrX:21666936..21666940, +
3.19e-45FFCP PHASE2:Hg19::chrX:21666936..21666940,+#_a396ba09af8d7717d5580346449f1eacp@chrX:21666936..21666940, +
4.0e-45FFCP PHASE2:Hg19::chr7:107302142..107302149,-#_2f93722ad4d1379f6528887a9e54f2c6p3@ENST00000440512
4.0e-45FFCP PHASE1:Hg19::chr7:107302142..107302149,-#_2f93722ad4d1379f6528887a9e54f2c6p3@ENST00000440512
5.0e-45FFCP PHASE2:Hg19::chr11:64411144..64411154,-#_e670e6938faaffdaa354398879fc8719p14@NRXN2
5.0e-45FFCP PHASE2:Hg19::chr5:63258078..63258088,-#_e670e6938faaffdaa354398879fc8719p6@HTR1A
5.0e-45FFCP PHASE1:Hg19::chr5:63258078..63258088,-#_e670e6938faaffdaa354398879fc8719p6@HTR1A
5.0e-45FFCP PHASE1:Hg19::chr11:64411144..64411154,-#_e670e6938faaffdaa354398879fc8719p14@NRXN2
7.83e-45FFCP PHASE1:Hg19::chrX:139795975..139795980,+#_89d98893dc6eb6f70bb3087891394c2fp@chrX:139795975..139795980, +
7.83e-45FFCP PHASE1:Hg19::chr2:173724876..173724893,+#_89d98893dc6eb6f70bb3087891394c2fp16@RAPGEF4
7.83e-45FFCP PHASE2:Hg19::chrX:139795975..139795980,+#_89d98893dc6eb6f70bb3087891394c2fp@chrX:139795975..139795980, +
7.83e-45FFCP PHASE2:Hg19::chr2:173724876..173724893,+#_89d98893dc6eb6f70bb3087891394c2fp16@RAPGEF4
1.53e-44FFCP PHASE2:Hg19::chr22:42393379..42393386,+#_356b4b406afde948fbcbfc67a4e28109p@chr22:42393379..42393386, +
1.53e-44FFCP PHASE2:Hg19::chr8:102701504..102701522,-#_356b4b406afde948fbcbfc67a4e28109p@chr8:102701504..102701522, -
1.53e-44FFCP PHASE1:Hg19::chr8:102701504..102701522,-#_356b4b406afde948fbcbfc67a4e28109p@chr8:102701504..102701522, -
1.53e-44FFCP PHASE1:Hg19::chr22:42393379..42393386,+#_356b4b406afde948fbcbfc67a4e28109p@chr22:42393379..42393386, +
1.91e-44FFCP PHASE1:Hg19::chrX:152587216..152587232,-#_8de960619b14f7974f57c8ae9621b946p@chrX:152587216..152587232, -
1.91e-44FFCP PHASE1:Hg19::chr9:87425922..87425930,+#_8de960619b14f7974f57c8ae9621b946p47@NTRK2
1.91e-44FFCP PHASE2:Hg19::chr9:87425922..87425930,+#_8de960619b14f7974f57c8ae9621b946p47@NTRK2
1.91e-44FFCP PHASE2:Hg19::chrX:152587216..152587232,-#_8de960619b14f7974f57c8ae9621b946p@chrX:152587216..152587232, -
3.99e-41FFCP PHASE1:Hg19::chr11:99941186..99941205,+#_070ea400a67140d79e16555af4b8f913p5@CNTN5
3.99e-41FFCP PHASE2:Hg19::chr11:99941186..99941205,+#_070ea400a67140d79e16555af4b8f913p5@CNTN5
3.99e-41FFCP PHASE1:Hg19::chr19:51164823..51164832,-#_070ea400a67140d79e16555af4b8f913p@chr19:51164823..51164832, -
3.99e-41FFCP PHASE2:Hg19::chr19:51164823..51164832,-#_070ea400a67140d79e16555af4b8f913p@chr19:51164823..51164832, -
4.89e-41FFCP PHASE2:Hg19::chr3:113023157..113023168,-#_5c907bc368d1d889b1e2bc49d3dfe343p4@WDR52
4.89e-41FFCP PHASE1:Hg19::chr3:113023157..113023168,-#_5c907bc368d1d889b1e2bc49d3dfe343p4@WDR52
5.99e-41FFCP PHASE2:Hg19::chr2:242815160..242815176,+#_9a751438967fe08b65039e3d8f00fc3bp@chr2:242815160..242815176, +
5.99e-41FFCP PHASE1:Hg19::chr2:242815160..242815176,+#_9a751438967fe08b65039e3d8f00fc3bp@chr2:242815160..242815176, +
8.98e-41FFCP PHASE1:Hg19::chr4:152403542..152403579,+#_32c0c826e3888583f3ed855349957db7p6@FAM160A1
8.98e-41FFCP PHASE2:Hg19::chr4:152403542..152403579,+#_32c0c826e3888583f3ed855349957db7p6@FAM160A1
1.34e-40FFCP PHASE1:Hg19::chr11:35281815..35281828,-#_9e2f525b55847c217f828f86f0cd9ac9p@chr11:35281815..35281828, -
1.34e-40FFCP PHASE2:Hg19::chr11:35281815..35281828,-#_9e2f525b55847c217f828f86f0cd9ac9p@chr11:35281815..35281828, -
2.01e-40FFCP PHASE1:Hg19::chr12:71314547..71314562,-#_e884c5e658f046c53fd9a69d88c20db4p8@PTPRR
2.01e-40FFCP PHASE2:Hg19::chr12:71314547..71314562,-#_e884c5e658f046c53fd9a69d88c20db4p8@PTPRR
3.01e-40FFCP PHASE1:Hg19::chr18:11751516..11751523,+#_6a53463225d6db855902a4dcb97d5da1p17@GNAL
3.01e-40FFCP PHASE2:Hg19::chr18:11751516..11751523,+#_6a53463225d6db855902a4dcb97d5da1p17@GNAL
5.49e-40FFCP PHASE1:Hg19::chr10:116887377..116887393,+#_c6bf8df3902fca35a38a96ab88aa85ccp@chr10:116887377..116887393, +
5.49e-40FFCP PHASE2:Hg19::chr10:116887377..116887393,+#_c6bf8df3902fca35a38a96ab88aa85ccp@chr10:116887377..116887393, +