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UBERON:0001961

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Name:mucosa-associated lymphoid tissue
Namespace:FANTOM
Definition:"diffuse system of small concentrations of lymphoid tissue found in various sites of the body such as the gastrointestinal tract, thyroid, breast, lung, salivary glands, eye, and skin[WP]. Mucosal-associated lymphoid tissue is typically found as nodules associated with mucosal epithelia with distinct internal structures including B- and T-zones for the activation of lymphocytes[GO]." [Wikipedia:Mucosa-associated_lymphoid_tissue]
Xrefs:
links:

FMA:62819
MA:0000140

ncithesaurus:Mucosa-Associated_Lymphoid_Tissue
Synonyms: "epithelio-lymphoid tissue" EXACT []
"MALT" EXACT []
"mucosa associated lymphatic tissue" EXACT []
"mucosa associated lymphoid tissue" EXACT []
"mucosa-associated lymphoid tissue" EXACT [GO:0048537]
"mucosal-associated lymphatic tissue" EXACT [GO:0048537]
"mucosal-associated lymphoid tissue" EXACT [GO:0048537]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_62819-MA_0000140
Subset: uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0012069(epithelium-associated lymphoid tissue)
part_of:UBERON:0000344(mucosa)



Children

is a:UBERON:0001962 (gut-associated lymphoid tissue)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001961 (mucosa-associated lymphoid tissue), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr20:21684387..21684390,-#_71e06f13452d3b007fcf29e7d9a7066ep2@ENST00000424377
5.42e-195FFCP PHASE2:Hg19::chr12:53200416..53200421,+#_71e06f13452d3b007fcf29e7d9a7066ep7@CU692075
5.42e-195FFCP PHASE2:Hg19::chr16:12334592..12334599,+#_71e06f13452d3b007fcf29e7d9a7066ep@chr16:12334592..12334599, +
5.42e-195FFCP PHASE1:Hg19::chr16:12334592..12334599,+#_71e06f13452d3b007fcf29e7d9a7066ep@chr16:12334592..12334599, +
5.42e-195FFCP PHASE2:Hg19::chr20:21684387..21684390,-#_71e06f13452d3b007fcf29e7d9a7066ep2@ENST00000424377
5.42e-195FFCP PHASE2:Hg19::chr2:89459813..89459818,-#_71e06f13452d3b007fcf29e7d9a7066ep1@IGKV6-21
5.42e-195FFCP PHASE1:Hg19::chr19:5850872..5850893,-#_71e06f13452d3b007fcf29e7d9a7066ep@chr19:5850872..5850893, -
5.42e-195FFCP PHASE1:Hg19::chr14:107049312..107049315,-#_71e06f13452d3b007fcf29e7d9a7066ep2@IGHV3-53
5.42e-195FFCP PHASE2:Hg19::chr16:12337006..12337010,+#_71e06f13452d3b007fcf29e7d9a7066ep@chr16:12337006..12337010, +
5.42e-195FFCP PHASE1:Hg19::chr16:12337006..12337010,+#_71e06f13452d3b007fcf29e7d9a7066ep@chr16:12337006..12337010, +
5.42e-195FFCP PHASE2:Hg19::chr19:5850872..5850893,-#_71e06f13452d3b007fcf29e7d9a7066ep@chr19:5850872..5850893, -
5.42e-195FFCP PHASE1:Hg19::chr12:53200416..53200421,+#_71e06f13452d3b007fcf29e7d9a7066ep7@CU692075
5.42e-195FFCP PHASE2:Hg19::chr14:107049312..107049315,-#_71e06f13452d3b007fcf29e7d9a7066ep2@IGHV3-53
5.42e-195FFCP PHASE1:Hg19::chr2:89459813..89459818,-#_71e06f13452d3b007fcf29e7d9a7066ep1@IGKV6-21
9.37e-99FFCP PHASE1:Hg19::chr7:25361115..25361117,+#_f363284ca4f003686a89986e6532b61ap@chr7:25361115..25361117, +
9.37e-99FFCP PHASE2:Hg19::chr20:31611186..31611191,+#_f363284ca4f003686a89986e6532b61ap10@BPIFB6
9.37e-99FFCP PHASE2:Hg19::chr7:25361115..25361117,+#_f363284ca4f003686a89986e6532b61ap@chr7:25361115..25361117, +
9.37e-99FFCP PHASE1:Hg19::chr11:1249994..1249999,+#_f363284ca4f003686a89986e6532b61ap30@MUC5B
9.37e-99FFCP PHASE1:Hg19::chr19:14662395..14662414,+#_f363284ca4f003686a89986e6532b61ap@chr19:14662395..14662414, +
9.37e-99FFCP PHASE2:Hg19::chr19:14662395..14662414,+#_f363284ca4f003686a89986e6532b61ap@chr19:14662395..14662414, +
9.37e-99FFCP PHASE1:Hg19::chr6:168095835..168095838,-#_f363284ca4f003686a89986e6532b61ap@chr6:168095835..168095838, -
9.37e-99FFCP PHASE1:Hg19::chr20:31611454..31611461,+#_f363284ca4f003686a89986e6532b61ap8@BPIFB6
9.37e-99FFCP PHASE2:Hg19::chr11:1263622..1263627,+#_f363284ca4f003686a89986e6532b61ap@chr11:1263622..1263627, +
9.37e-99FFCP PHASE2:Hg19::chr6:168095835..168095838,-#_f363284ca4f003686a89986e6532b61ap@chr6:168095835..168095838, -
9.37e-99FFCP PHASE2:Hg19::chr20:31611454..31611461,+#_f363284ca4f003686a89986e6532b61ap8@BPIFB6
9.37e-99FFCP PHASE1:Hg19::chr20:31611186..31611191,+#_f363284ca4f003686a89986e6532b61ap10@BPIFB6
9.37e-99FFCP PHASE1:Hg19::chr11:1263622..1263627,+#_f363284ca4f003686a89986e6532b61ap@chr11:1263622..1263627, +
9.37e-99FFCP PHASE2:Hg19::chr11:1249994..1249999,+#_f363284ca4f003686a89986e6532b61ap30@MUC5B
2.55e-98FFCP PHASE2:Hg19::chr11:1263382..1263385,+#_d6f18d0476650f94a4565cbe7fd75824p@chr11:1263382..1263385, +
2.55e-98FFCP PHASE2:Hg19::chr16:70602961..70602972,+#_d6f18d0476650f94a4565cbe7fd75824p@chr16:70602961..70602972, +
2.55e-98FFCP PHASE2:Hg19::chr10:135337234..135337244,-#_d6f18d0476650f94a4565cbe7fd75824p@chr10:135337234..135337244, -
2.55e-98FFCP PHASE2:Hg19::chr11:1260725..1260734,+#_d6f18d0476650f94a4565cbe7fd75824p@chr11:1260725..1260734, +
2.55e-98FFCP PHASE2:Hg19::chr12:52478564..52478569,+#_d6f18d0476650f94a4565cbe7fd75824+, p@chr12:52478564..52478569
2.55e-98FFCP PHASE1:Hg19::chr10:135337234..135337244,-#_d6f18d0476650f94a4565cbe7fd75824p@chr10:135337234..135337244, -
2.55e-98FFCP PHASE1:Hg19::chr11:1263382..1263385,+#_d6f18d0476650f94a4565cbe7fd75824p@chr11:1263382..1263385, +
2.55e-98FFCP PHASE1:Hg19::chr4:8437851..8437881,+#_d6f18d0476650f94a4565cbe7fd75824p6@METTL19
2.55e-98FFCP PHASE2:Hg19::chr4:8437851..8437881,+#_d6f18d0476650f94a4565cbe7fd75824p6@METTL19
2.55e-98FFCP PHASE2:Hg19::chr20:36694529..36694537,+#_d6f18d0476650f94a4565cbe7fd75824p30@RPRD1B
2.55e-98FFCP PHASE1:Hg19::chr11:1260725..1260734,+#_d6f18d0476650f94a4565cbe7fd75824p@chr11:1260725..1260734, +
2.55e-98FFCP PHASE1:Hg19::chr20:36694529..36694537,+#_d6f18d0476650f94a4565cbe7fd75824p30@RPRD1B
2.55e-98FFCP PHASE1:Hg19::chr16:70602961..70602972,+#_d6f18d0476650f94a4565cbe7fd75824p@chr16:70602961..70602972, +
2.55e-98FFCP PHASE1:Hg19::chr12:52478564..52478569,+#_d6f18d0476650f94a4565cbe7fd75824p@chr12:52478564..52478569, +
1.87e-86FFCP PHASE1:Mm9::chr12:116051009..116051016,-#_ee613dbff46de927c7350e66aca0bbbfp@chr12:116051009..116051016, -
1.87e-86FFCP PHASE2:Mm9::chr12:115974938..115974945,-#_ee613dbff46de927c7350e66aca0bbbf-, p@chr12:115974938..115974945
1.87e-86FFCP PHASE2:Mm9::chr9:69086930..69086933,+#_ee613dbff46de927c7350e66aca0bbbfp@chr9:69086930..69086933, +
1.87e-86FFCP PHASE2:Mm9::chr17:59564142..59564144,+#_ee613dbff46de927c7350e66aca0bbbfp@chr17:59564142..59564144, +
1.87e-86FFCP PHASE1:Mm9::chr12:115974938..115974945,-#_ee613dbff46de927c7350e66aca0bbbfp@chr12:115974938..115974945, -
1.87e-86FFCP PHASE1:Mm9::chr19:31038353..31038362,+#_ee613dbff46de927c7350e66aca0bbbfp@chr19:31038353..31038362, +
1.87e-86FFCP PHASE2:Mm9::chr12:115979100..115979103,-#_ee613dbff46de927c7350e66aca0bbbfp@chr12:115979100..115979103, -
1.87e-86FFCP PHASE1:Mm9::chr12:115979100..115979103,-#_ee613dbff46de927c7350e66aca0bbbfp@chr12:115979100..115979103, -
1.87e-86FFCP PHASE2:Mm9::chr12:116051009..116051016,-#_ee613dbff46de927c7350e66aca0bbbfp@chr12:116051009..116051016, -
1.87e-86FFCP PHASE1:Mm9::chr8:23117055..23117056,-#_ee613dbff46de927c7350e66aca0bbbfp@chr8:23117055..23117056, -
1.87e-86FFCP PHASE2:Mm9::chr2:63059909..63059910,+#_ee613dbff46de927c7350e66aca0bbbfp@chr2:63059909..63059910, +
1.87e-86FFCP PHASE1:Mm9::chr6:69701328..69701342,-#_ee613dbff46de927c7350e66aca0bbbfp1@ENSMUST00000114212
1.87e-86FFCP PHASE1:Mm9::chr17:59564142..59564144,+#_ee613dbff46de927c7350e66aca0bbbfp@chr17:59564142..59564144, +
1.87e-86FFCP PHASE2:Mm9::chr2:14201203..14201212,+#_ee613dbff46de927c7350e66aca0bbbfp@chr2:14201203..14201212, +
1.87e-86FFCP PHASE2:Mm9::chr19:38060099..38060102,+#_ee613dbff46de927c7350e66aca0bbbfp@chr19:38060099..38060102, +
1.87e-86FFCP PHASE1:Mm9::chr2:14201203..14201212,+#_ee613dbff46de927c7350e66aca0bbbfp@chr2:14201203..14201212, +
1.87e-86FFCP PHASE1:Mm9::chr6:69785263..69785268,-#_ee613dbff46de927c7350e66aca0bbbfp@chr6:69785263..69785268, -
1.87e-86FFCP PHASE1:Mm9::chr9:69086930..69086933,+#_ee613dbff46de927c7350e66aca0bbbf+, p@chr9:69086930..69086933
1.87e-86FFCP PHASE1:Mm9::chr19:38060099..38060102,+#_ee613dbff46de927c7350e66aca0bbbfp@chr19:38060099..38060102, +
1.87e-86FFCP PHASE2:Mm9::chr6:69701328..69701342,-#_ee613dbff46de927c7350e66aca0bbbfp1@ENSMUST00000114212
1.87e-86FFCP PHASE2:Mm9::chr6:69785263..69785268,-#_ee613dbff46de927c7350e66aca0bbbfp@chr6:69785263..69785268, -
1.87e-86FFCP PHASE1:Mm9::chr2:63059909..63059910,+#_ee613dbff46de927c7350e66aca0bbbfp@chr2:63059909..63059910, +
1.87e-86FFCP PHASE2:Mm9::chr8:23117055..23117056,-#_ee613dbff46de927c7350e66aca0bbbfp@chr8:23117055..23117056, -
1.87e-86FFCP PHASE2:Mm9::chr19:31038353..31038362,+#_ee613dbff46de927c7350e66aca0bbbfp@chr19:31038353..31038362, +
1.23e-66FFCP PHASE2:Hg19::chr12:52478546..52478552,+#_6e29dbda06d056f1b8a4b0c49b6aa1f1p@chr12:52478546..52478552, +
1.23e-66FFCP PHASE2:Hg19::chr1:157567826..157567835,-#_6e29dbda06d056f1b8a4b0c49b6aa1f1p2@FCRL4
1.23e-66FFCP PHASE1:Hg19::chr1:157567826..157567835,-#_6e29dbda06d056f1b8a4b0c49b6aa1f1p2@FCRL4
1.23e-66FFCP PHASE1:Hg19::chr12:52478546..52478552,+#_6e29dbda06d056f1b8a4b0c49b6aa1f1p@chr12:52478546..52478552, +
2.39e-66FFCP PHASE2:Hg19::chr20:31612754..31612763,+#_897b359620fd78a4029d1f5d3ea7a577p@chr20:31612754..31612763, +
2.39e-66FFCP PHASE2:Hg19::chr14:103560509..103560517,+#_897b359620fd78a4029d1f5d3ea7a577+, p@chr14:103560509..103560517
2.39e-66FFCP PHASE1:Hg19::chr19:36640447..36640459,+#_897b359620fd78a4029d1f5d3ea7a577p@chr19:36640447..36640459, +
2.39e-66FFCP PHASE2:Hg19::chr13:107026326..107026335,-#_897b359620fd78a4029d1f5d3ea7a577p@chr13:107026326..107026335, -
2.39e-66FFCP PHASE1:Hg19::chr11:1265985..1265990,+#_897b359620fd78a4029d1f5d3ea7a577p@chr11:1265985..1265990, +
2.39e-66FFCP PHASE2:Hg19::chr20:62321640..62321645,+#_897b359620fd78a4029d1f5d3ea7a577p1@BC131817
2.39e-66FFCP PHASE1:Hg19::chr20:62321640..62321645,+#_897b359620fd78a4029d1f5d3ea7a577p1@BC131817
2.39e-66FFCP PHASE1:Hg19::chr14:103560509..103560517,+#_897b359620fd78a4029d1f5d3ea7a577p@chr14:103560509..103560517, +
2.39e-66FFCP PHASE1:Hg19::chr13:107026326..107026335,-#_897b359620fd78a4029d1f5d3ea7a577p@chr13:107026326..107026335, -
2.39e-66FFCP PHASE1:Hg19::chr20:31612754..31612763,+#_897b359620fd78a4029d1f5d3ea7a577p@chr20:31612754..31612763, +
2.39e-66FFCP PHASE2:Hg19::chr19:36640447..36640459,+#_897b359620fd78a4029d1f5d3ea7a577p@chr19:36640447..36640459, +
2.39e-66FFCP PHASE2:Hg19::chr11:1265985..1265990,+#_897b359620fd78a4029d1f5d3ea7a577p@chr11:1265985..1265990, +
4.66e-66FFCP PHASE2:Hg19::chr3:187957664..187957675,+#_9f67c72851bfaa15d213f23f32b39291p58@LPP
4.66e-66FFCP PHASE1:Hg19::chr11:1283367..1283377,+#_9f67c72851bfaa15d213f23f32b39291p@chr11:1283367..1283377, +
4.66e-66FFCP PHASE1:Hg19::chr6:30954084..30954093,-#_9f67c72851bfaa15d213f23f32b39291p@chr6:30954084..30954093, -
4.66e-66FFCP PHASE1:Hg19::chr1:152382640..152382645,+#_9f67c72851bfaa15d213f23f32b39291p@chr1:152382640..152382645, +
4.66e-66FFCP PHASE1:Hg19::chr18:29006845..29006854,-#_9f67c72851bfaa15d213f23f32b39291p@chr18:29006845..29006854, -
4.66e-66FFCP PHASE2:Hg19::chr18:29006845..29006854,-#_9f67c72851bfaa15d213f23f32b39291p@chr18:29006845..29006854, -
4.66e-66FFCP PHASE2:Hg19::chr6:30954084..30954093,-#_9f67c72851bfaa15d213f23f32b39291p@chr6:30954084..30954093, -
4.66e-66FFCP PHASE1:Hg19::chr19:51530837..51530842,-#_9f67c72851bfaa15d213f23f32b39291p10@KLK11
4.66e-66FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_9f67c72851bfaa15d213f23f32b39291p@chr3:124535316..124535340, +
4.66e-66FFCP PHASE2:Hg19::chr19:51530837..51530842,-#_9f67c72851bfaa15d213f23f32b39291p10@KLK11
4.66e-66FFCP PHASE2:Hg19::chr16:69418649..69418659,-#_9f67c72851bfaa15d213f23f32b39291p@chr16:69418649..69418659, -
4.66e-66FFCP PHASE2:Hg19::chr1:152382640..152382645,+#_9f67c72851bfaa15d213f23f32b39291p@chr1:152382640..152382645, +
4.66e-66FFCP PHASE1:Hg19::chr3:187957646..187957656,+#_9f67c72851bfaa15d213f23f32b39291p43@LPP
4.66e-66FFCP PHASE1:Hg19::chr16:69418649..69418659,-#_9f67c72851bfaa15d213f23f32b39291p@chr16:69418649..69418659, -
4.66e-66FFCP PHASE2:Hg19::chr18:49921251..49921263,+#_9f67c72851bfaa15d213f23f32b39291p@chr18:49921251..49921263, +
4.66e-66FFCP PHASE2:Hg19::chr12:53673418..53673427,+#_9f67c72851bfaa15d213f23f32b39291p9@ESPL1
4.66e-66FFCP PHASE2:Hg19::chr11:1283367..1283377,+#_9f67c72851bfaa15d213f23f32b39291p@chr11:1283367..1283377, +
4.66e-66FFCP PHASE1:Hg19::chr18:49921251..49921263,+#_9f67c72851bfaa15d213f23f32b39291p@chr18:49921251..49921263, +