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UBERON:0003059

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Name:presomitic mesoderm
Namespace:FANTOM
Definition:"Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. <a href
Xrefs:
links:

AAO:0011086
EFO:0001982
TAO:0000279
VHOG:0000559
XAO:0000057

ZFA:0000279
Synonyms: "presumptive somite mesoderm" RELATED []
"PSM" RELATED []
"segmental plate" EXACT []
"somitogenic mesoderm" RELATED []
"unsegmented paraxial mesoderm" EXACT [UBERON:cjm]
Alt_id: UBERON:XAO_0000057-ZFA_0000279

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0007282(presumptive segmental plate)
part_of:UBERON:0003077(paraxial mesoderm)



Children

develops from:UBERON:0002329 (somite)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003059 (presomitic mesoderm), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.24e-58FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_f2e11086ca10bfb6174e89f46111e5b9p@chrX:160838683..160838694, +
5.24e-58FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_f2e11086ca10bfb6174e89f46111e5b9p@chrX:160838683..160838694, +
5.11e-50FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_16cf9f251c1c57bf0da847655395fc58p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_16cf9f251c1c57bf0da847655395fc58p@chrX:65748600..65748616, +
5.11e-50FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_16cf9f251c1c57bf0da847655395fc58p@chr12:105433069..105433075, -
5.11e-50FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_16cf9f251c1c57bf0da847655395fc58p@chr12:105433069..105433075, -
1.47e-48FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_8c07e3e502785a76b17c6ad4da5e09fcp@chrX:160838787..160838800, +
1.47e-48FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_8c07e3e502785a76b17c6ad4da5e09fcp@chrX:160838787..160838800, +
1.58e-44FFCP PHASE1:Hg19::chr10:49813077..49813087,-#_caaf15760ba38a4ce546a9275dfad131p8@ARHGAP22
1.58e-44FFCP PHASE2:Hg19::chr10:49813077..49813087,-#_caaf15760ba38a4ce546a9275dfad131p8@ARHGAP22
8.42e-44FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_2f8fdd6bd2f23fb2e3db190e4e2c640dp@chr11:81849982..81850000, +
8.42e-44FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_2f8fdd6bd2f23fb2e3db190e4e2c640dp@chr11:81849982..81850000, +
9.2e-41FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_a5858d788597bec0730cd162f4a7c9acp@chr6:53359400..53359406, +
9.2e-41FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_a5858d788597bec0730cd162f4a7c9ac+, p@chr6:53359400..53359406
1.15e-40FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_a7a24eb9d15b3831843c7b20e0ebfb66p@chr17:14813242..14813246, -
1.15e-40FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_a7a24eb9d15b3831843c7b20e0ebfb66p@chr17:14813242..14813246, -
2.26e-39FFCP PHASE2:Hg19::chr10:49813051..49813064,-#_c2d5a9de8fc0c75137dd364f3b818dfap4@ARHGAP22
2.26e-39FFCP PHASE1:Hg19::chr10:49813051..49813064,-#_c2d5a9de8fc0c75137dd364f3b818dfap4@ARHGAP22
2.88e-39FFCP PHASE2:Hg19::chr9:35685631..35685657,+#_af53ce1caf5d4f7992abee8878a48cd5p@chr9:35685631..35685657, +
2.88e-39FFCP PHASE1:Hg19::chr9:35685631..35685657,+#_af53ce1caf5d4f7992abee8878a48cd5p@chr9:35685631..35685657, +
3.7e-39FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_0be163541f44a17202b377da204da742p4@Gpr39
3.7e-39FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_0be163541f44a17202b377da204da742p4@Gpr39
3.75e-39FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_eac384e47b5631ae0baa1f09dd30577ap@chrX:160823859..160823870, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_eac384e47b5631ae0baa1f09dd30577ap@chrX:160840025..160840037, +
3.75e-39FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_eac384e47b5631ae0baa1f09dd30577ap@chrX:160840048..160840057, +
3.75e-39FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_eac384e47b5631ae0baa1f09dd30577ap@chrX:160823859..160823870, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_eac384e47b5631ae0baa1f09dd30577ap@chrX:160840025..160840037, +
3.75e-39FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_eac384e47b5631ae0baa1f09dd30577ap@chrX:160840048..160840057, +
1.14e-38FFCP PHASE2:Hg19::chr6:148593425..148593498,+#_15359e7aa3f5dfea3a0f7fdc021a54cbp2@SASH1
1.14e-38FFCP PHASE1:Hg19::chr6:148593425..148593498,+#_15359e7aa3f5dfea3a0f7fdc021a54cbp2@SASH1
1.34e-36FFCP PHASE1:Hg19::chr10:49813013..49813032,-#_1c92a48d94f7d168a1b54717e682a729p3@ARHGAP22
1.34e-36FFCP PHASE2:Hg19::chr10:49813013..49813032,-#_1c92a48d94f7d168a1b54717e682a729p3@ARHGAP22
1.46e-35FFCP PHASE1:Hg19::chr19:50031567..50031632,+#_d354578b5a772a4946463c4bd8424eb6p2@RCN3
1.46e-35FFCP PHASE2:Hg19::chr19:50031567..50031632,+#_d354578b5a772a4946463c4bd8424eb6p2@RCN3
3.31e-35FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_b488d1289a402c7605d03eb537cc6b37p11@Fam198b
3.31e-35FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_b488d1289a402c7605d03eb537cc6b37p11@Fam198b
3.69e-35FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_990f98e58d201d977de4aa1b084e6444p@chr1:127574253..127574264, +
3.69e-35FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_990f98e58d201d977de4aa1b084e6444p@chr1:127574253..127574264, +
5.09e-35FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_e9e4477c3be5ab720c922f9f333d51ccp7@Gpr39
5.09e-35FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_e9e4477c3be5ab720c922f9f333d51ccp7@Gpr39
5.98e-35FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_f578b5763413528b12b9cbd262813334p11@Gpr39
5.98e-35FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_f578b5763413528b12b9cbd262813334p11@Gpr39
7.03e-35FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_b2f568332c16477086da0a730511e333p@chrX:160839768..160839780, +
7.03e-35FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_b2f568332c16477086da0a730511e333p@chrX:160839768..160839780, +
9.95e-35FFCP PHASE1:Hg19::chr9:35685445..35685517,+#_b58d234b97cda58dd20ab20fa249f398p@chr9:35685445..35685517, +
9.95e-35FFCP PHASE2:Hg19::chr9:35685445..35685517,+#_b58d234b97cda58dd20ab20fa249f398p@chr9:35685445..35685517, +
1.33e-34FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_c04a62734d68952a8fe327a0325f9ebdp8@Gpr39
1.33e-34FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_c04a62734d68952a8fe327a0325f9ebdp8@Gpr39
1.89e-34FFCP PHASE1:Hg19::chr9:35684475..35684520,+#_954169b314668e6cf33930435316d284p@chr9:35684475..35684520, +
1.89e-34FFCP PHASE2:Hg19::chr9:35684475..35684520,+#_954169b314668e6cf33930435316d284p@chr9:35684475..35684520, +
4.48e-34FFCP PHASE1:Hg19::chr14:94595800..94595811,-#_ad3b4b0fcdce1e9a3d0f4f5dca1a1c1dp3@IFI27L2
4.48e-34FFCP PHASE2:Hg19::chr14:94595800..94595811,-#_ad3b4b0fcdce1e9a3d0f4f5dca1a1c1dp3@IFI27L2
5.0e-34FFCP PHASE1:Hg19::chr7:102553470..102553487,+#_e9189c9b907fbfb9a66cd23148ab2933p2@LRRC17
5.0e-34FFCP PHASE2:Hg19::chr7:102553470..102553487,+#_e9189c9b907fbfb9a66cd23148ab2933p2@LRRC17
2.06e-33FFCP PHASE1:Hg19::chr9:35689148..35689192,+#_73f51c94d50aedc7d930c08201d2f7c5p@chr9:35689148..35689192, +
2.06e-33FFCP PHASE2:Hg19::chr9:35689148..35689192,+#_73f51c94d50aedc7d930c08201d2f7c5p@chr9:35689148..35689192, +
7.56e-33FFCP PHASE2:Hg19::chr7:102553430..102553456,+#_1ca3e842a173f23a346c5b1e59e66d08p1@LRRC17
7.56e-33FFCP PHASE1:Hg19::chr7:102553430..102553456,+#_1ca3e842a173f23a346c5b1e59e66d08p1@LRRC17
1.21e-32FFCP PHASE2:Hg19::chr21:47518695..47518709,+#_6433e708e059cb4b52b477fe9ed418a0p6@COL6A2
1.21e-32FFCP PHASE1:Hg19::chr21:47518695..47518709,+#_6433e708e059cb4b52b477fe9ed418a0p6@COL6A2
2.74e-32FFCP PHASE1:Hg19::chr21:47518637..47518688,+#_acaa17c59368236608eb0ba00ae4e9bep2@COL6A2
2.74e-32FFCP PHASE2:Hg19::chr21:47518637..47518688,+#_acaa17c59368236608eb0ba00ae4e9bep2@COL6A2
3.94e-32FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_b3587ca55dec6f19dbee4d7265bdc55ap@chr7:96658543..96658553, -
3.94e-32FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_b3587ca55dec6f19dbee4d7265bdc55ap@chr7:96658543..96658553, -
5.83e-32FFCP PHASE2:Hg19::chr4:74703497..74703511,+#_f81bc3aabd1a2591ad4e5e7caf6a31a2p@chr4:74703497..74703511, +
5.83e-32FFCP PHASE1:Hg19::chr4:74703497..74703511,+#_f81bc3aabd1a2591ad4e5e7caf6a31a2p@chr4:74703497..74703511, +
9.0e-32FFCP PHASE2:Hg19::chr2:134548872..134548879,-#_77c014de1ac030311213da3e049f3507p@chr2:134548872..134548879, -
9.0e-32FFCP PHASE1:Hg19::chr2:134548872..134548879,-#_77c014de1ac030311213da3e049f3507p@chr2:134548872..134548879, -
9.7e-32FFCP PHASE1:Hg19::chr9:35685273..35685313,+#_a2fd57a29142384f045bec046b7d1930p@chr9:35685273..35685313, +
9.7e-32FFCP PHASE2:Hg19::chr9:35685273..35685313,+#_a2fd57a29142384f045bec046b7d1930p@chr9:35685273..35685313, +
1.33e-31FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_75c15ce5eccdfb7c41f0241228be0348p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_75c15ce5eccdfb7c41f0241228be0348p2@Il6
1.33e-31FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_75c15ce5eccdfb7c41f0241228be0348p@chr7:91081998..91082010, -
1.33e-31FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_75c15ce5eccdfb7c41f0241228be0348p2@Il6
1.59e-31FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_43eb515857562e689fd9ec25cc373ed4p@chr10:67598037..67598049, -
1.59e-31FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_43eb515857562e689fd9ec25cc373ed4p@chr10:67598037..67598049, -
2.72e-31FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_e3a130ac250e466f2e722f9feea4fff4p@chr2:65009852..65009866, -
2.72e-31FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_e3a130ac250e466f2e722f9feea4fff4p@chr2:65009852..65009866, -
2.8e-31FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_51433d1d79b88490b6ee2a66ef20b357p@chr18:52678391..52678395, -
2.8e-31FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_51433d1d79b88490b6ee2a66ef20b357p@chr18:52678391..52678395, -
7.65e-31FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_34156a47cda78b003d4929ee58a21e1fp@chr6:91222095..91222107, +
7.65e-31FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_34156a47cda78b003d4929ee58a21e1fp@chr6:91222095..91222107, +
9.72e-31FFCP PHASE2:Hg19::chr1:79472477..79472510,-#_4347bc7c7cdb10ff571457620e4e7649p2@ELTD1
9.72e-31FFCP PHASE1:Hg19::chr1:79472477..79472510,-#_4347bc7c7cdb10ff571457620e4e7649p2@ELTD1
1.01e-30FFCP PHASE2:Hg19::chr7:100773764..100773799,-#_6d3b33ff7e5a0db8d55bc274ff05b86ep@chr7:100773764..100773799, -
1.01e-30FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_c88761af5d34075a84eab06751929458p9@Kctd10
1.01e-30FFCP PHASE1:Hg19::chr7:100773764..100773799,-#_6d3b33ff7e5a0db8d55bc274ff05b86ep@chr7:100773764..100773799, -
1.01e-30FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_c88761af5d34075a84eab06751929458p9@Kctd10
1.17e-30FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_1967969f3518208a9362908a0af8c6a0p6@Gpr39
1.17e-30FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_1967969f3518208a9362908a0af8c6a0p6@Gpr39
1.26e-30FFCP PHASE2:Hg19::chr12:53491743..53491754,+#_3f49744d867ab382ce8820777c8ae172p1@AK074416
1.26e-30FFCP PHASE1:Hg19::chr12:53491743..53491754,+#_3f49744d867ab382ce8820777c8ae172p1@AK074416
1.4e-30FFCP PHASE1:Hg19::chr7:93516035..93516056,+#_984280c55f41daa9ac7957d3bdee076ep1@CU675118
1.4e-30FFCP PHASE2:Hg19::chr7:93516035..93516056,+#_984280c55f41daa9ac7957d3bdee076ep1@CU675118
1.8e-30FFCP PHASE2:Hg19::chr21:47532318..47532355,+#_6c9dc1fb5b75decefa61c0634f5d4f9ep8@COL6A2
1.8e-30FFCP PHASE1:Hg19::chr21:47532318..47532355,+#_6c9dc1fb5b75decefa61c0634f5d4f9ep8@COL6A2
2.01e-30FFCP PHASE1:Hg19::chr2:33359687..33359717,+#_483d5b43b17ce503e580b47c8e3ba23dp2@LTBP1
2.01e-30FFCP PHASE2:Hg19::chr2:33359687..33359717,+#_483d5b43b17ce503e580b47c8e3ba23dp2@LTBP1
3.87e-30FFCP PHASE2:Hg19::chr21:47542827..47542859,-#_a36e624e49dc93e74544923e642a22f2-, p@chr21:47542827..47542859
3.87e-30FFCP PHASE1:Hg19::chr21:47542827..47542859,-#_a36e624e49dc93e74544923e642a22f2p@chr21:47542827..47542859, -










Property "Property value" (as page type) with input value "UBPROP:0000001 "Unsegmented field of paraxial mesoderm present posterior to the most recently formed somite pair, from which somites will form. Kimmel et al, 1995.[TAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.