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UBERON:0004209

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Name:renal vesicle
Namespace:FANTOM
Definition:"The renal vesicle is the primordial structure of the nephron epithelium, and is formed by the condensation of mesenchymal cells. " [GO:0072077]
Synonyms: "stage I nephron" EXACT ZFA:0005586
Comments:Editor notes: note that this class includes both metanephric and mesonephric vesicles - ZFA and EHDAA2 associations are placed with these classes. TODO - make a more specific develops_from relationship - see UBERON:0005107

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0007497(developing epithelial placode),UBERON:0007503(epithelial vesicle)
develops_from:UBERON:0004208(nephrogenic mesenchyme)
part_of:UBERON:0010536(nephron progenitor)



Children

develops from:UBERON:0004198 (comma-shaped body),UBERON:0010532 (primitive nephron)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004209 (renal vesicle), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.87e-64FFCP PHASE2:Hg19::chr2:120409486..120409492,+#_2c37c430723ed188cee7769131b6ee56p@chr2:120409486..120409492, +
6.87e-64FFCP PHASE1:Hg19::chr2:120409486..120409492,+#_2c37c430723ed188cee7769131b6ee56p@chr2:120409486..120409492, +
9.62e-40FFCP PHASE2:Hg19::chr1:94713418..94713436,+#_be70af6ff884ac6f15aaff1dacfe819cp1@ENST00000413103
9.62e-40FFCP PHASE1:Hg19::chr1:94713418..94713436,+#_be70af6ff884ac6f15aaff1dacfe819cp1@ENST00000413103
1.16e-36FFCP PHASE1:Hg19::chr17:79426453..79426462,+#_a6382e286dbdf1b5d2081fb4cb4af070p@chr17:79426453..79426462, +
1.16e-36FFCP PHASE2:Hg19::chr17:79426453..79426462,+#_a6382e286dbdf1b5d2081fb4cb4af070p@chr17:79426453..79426462, +
1.31e-36FFCP PHASE1:Hg19::chr8:77557753..77557755,-#_61498b375dc84a822ddbd50162324775p@chr8:77557753..77557755, -
1.31e-36FFCP PHASE2:Hg19::chr8:77557753..77557755,-#_61498b375dc84a822ddbd50162324775p@chr8:77557753..77557755, -
5.58e-32FFCP PHASE1:Hg19::chr1:32042764..32042776,+#_2392da3b90616dd328db4ebaddbc500fp6@TINAGL1
5.58e-32FFCP PHASE2:Hg19::chr1:32042764..32042776,+#_2392da3b90616dd328db4ebaddbc500fp6@TINAGL1
1.53e-30FFCP PHASE2:Hg19::chr15:91416076..91416089,+#_b9a660d495a350ee924a854156fcafdbp9@FURIN
1.53e-30FFCP PHASE1:Hg19::chr15:91416076..91416089,+#_b9a660d495a350ee924a854156fcafdbp9@FURIN
3.83e-30FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_888028d57e6b6ea0cc9e5044ba6ffb8bp7@LRRN4
3.83e-30FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_888028d57e6b6ea0cc9e5044ba6ffb8bp7@LRRN4
1.78e-29FFCP PHASE1:Hg19::chr22:47030082..47030087,+#_908f1ab254a86780c2bcd5b584a1faa8p@chr22:47030082..47030087, +
1.78e-29FFCP PHASE2:Hg19::chr22:47030082..47030087,+#_908f1ab254a86780c2bcd5b584a1faa8+, p@chr22:47030082..47030087
1.78e-29FFCP PHASE2:Hg19::chr1:42777312..42777314,+#_908f1ab254a86780c2bcd5b584a1faa8+, p@chr1:42777312..42777314
1.78e-29FFCP PHASE2:Hg19::chr2:26700984..26700993,-#_908f1ab254a86780c2bcd5b584a1faa8p7@OTOF
1.78e-29FFCP PHASE2:Hg19::chr2:26700331..26700340,-#_908f1ab254a86780c2bcd5b584a1faa8p@chr2:26700331..26700340, -
1.78e-29FFCP PHASE2:Hg19::chr6:18225523..18225534,-#_908f1ab254a86780c2bcd5b584a1faa8p@chr6:18225523..18225534, -
1.78e-29FFCP PHASE1:Hg19::chr6:18225523..18225534,-#_908f1ab254a86780c2bcd5b584a1faa8p@chr6:18225523..18225534, -
1.78e-29FFCP PHASE1:Hg19::chr2:26700984..26700993,-#_908f1ab254a86780c2bcd5b584a1faa8p7@OTOF
1.78e-29FFCP PHASE1:Hg19::chr1:42777312..42777314,+#_908f1ab254a86780c2bcd5b584a1faa8p@chr1:42777312..42777314, +
1.78e-29FFCP PHASE1:Hg19::chr2:26700331..26700340,-#_908f1ab254a86780c2bcd5b584a1faa8p@chr2:26700331..26700340, -
7.96e-27FFCP PHASE2:Hg19::chr10:3477893..3477912,-#_d6eed8dd14fec1a57a2250b83477a28bp@chr10:3477893..3477912, -
7.96e-27FFCP PHASE1:Hg19::chr10:3477893..3477912,-#_d6eed8dd14fec1a57a2250b83477a28bp@chr10:3477893..3477912, -
6.29e-26FFCP PHASE2:Hg19::chr1:172926077..172926120,-#_738f99ca439b716f5376a47eba1cbcd2p@chr1:172926077..172926120, -
6.29e-26FFCP PHASE1:Hg19::chr1:172926077..172926120,-#_738f99ca439b716f5376a47eba1cbcd2p@chr1:172926077..172926120, -
6.32e-26FFCP PHASE2:Hg19::chrX:128782722..128782738,-#_a41099eee94908a51cc8a52e21fb7ed7p5@APLN
6.32e-26FFCP PHASE1:Hg19::chrX:128782722..128782738,-#_a41099eee94908a51cc8a52e21fb7ed7p5@APLN
9.89e-26FFCP PHASE2:Hg19::chr2:693380..693398,+#_62f44026e6e772a4ddba62ffef7db8d7p@chr2:693380..693398, +
9.89e-26FFCP PHASE1:Hg19::chr2:693380..693398,+#_62f44026e6e772a4ddba62ffef7db8d7p@chr2:693380..693398, +
1.28e-23FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_5c8ffea96fb24557565cceb0b47707cfp@chr2:133426030..133426041, -
1.28e-23FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_5c8ffea96fb24557565cceb0b47707cfp@chr2:133426030..133426041, -
1.28e-23FFCP PHASE2:Hg19::chr6:84849252..84849259,+#_5c8ffea96fb24557565cceb0b47707cfp@chr6:84849252..84849259, +
1.28e-23FFCP PHASE1:Hg19::chr6:84849252..84849259,+#_5c8ffea96fb24557565cceb0b47707cfp@chr6:84849252..84849259, +
1.44e-23FFCP PHASE1:Hg19::chr7:28998254..28998261,-#_e2a0a2508ab60241a1199a56699e04eep10@TRIL
1.44e-23FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_e2a0a2508ab60241a1199a56699e04eep23@TTC39A
1.44e-23FFCP PHASE2:Hg19::chr7:28998254..28998261,-#_e2a0a2508ab60241a1199a56699e04eep10@TRIL
1.44e-23FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_e2a0a2508ab60241a1199a56699e04eep23@TTC39A
1.61e-23FFCP PHASE1:Hg19::chr7:4051097..4051112,+#_0e6bc5a6ec836d5cc1d023f47e2427f1+, p@chr7:4051097..4051112
1.61e-23FFCP PHASE2:Hg19::chr7:4051097..4051112,+#_0e6bc5a6ec836d5cc1d023f47e2427f1p@chr7:4051097..4051112, +
1.61e-23FFCP PHASE2:Hg19::chr15:85403302..85403304,+#_0e6bc5a6ec836d5cc1d023f47e2427f1p@chr15:85403302..85403304, +
1.61e-23FFCP PHASE1:Hg19::chr15:85403302..85403304,+#_0e6bc5a6ec836d5cc1d023f47e2427f1p@chr15:85403302..85403304, +
1.8e-23FFCP PHASE2:Hg19::chr16:2141529..2141537,+#_e9df6dec30a6e8fa7e2cbc571e98d27bp@chr16:2141529..2141537, +
1.8e-23FFCP PHASE1:Hg19::chr16:2141529..2141537,+#_e9df6dec30a6e8fa7e2cbc571e98d27bp@chr16:2141529..2141537, +
2.92e-22FFCP PHASE1:Hg19::chr5:74244100..74244117,+#_7535efc392a784eaf5f537cadbfa46f7p@chr5:74244100..74244117, +
2.92e-22FFCP PHASE2:Hg19::chr5:74244100..74244117,+#_7535efc392a784eaf5f537cadbfa46f7p@chr5:74244100..74244117, +
5.69e-22FFCP PHASE1:Hg19::chr5:148651758..148651769,-#_4f3b5e662c2a76585b790444f2a0a192p@chr5:148651758..148651769, -
5.69e-22FFCP PHASE2:Hg19::chr5:148651758..148651769,-#_4f3b5e662c2a76585b790444f2a0a192p@chr5:148651758..148651769, -
2.9e-21FFCP PHASE1:Hg19::chr16:86768403..86768437,+#_6e23282ea5d05012d781d29e27cc2e47p@chr16:86768403..86768437, +
2.9e-21FFCP PHASE2:Hg19::chr16:86768403..86768437,+#_6e23282ea5d05012d781d29e27cc2e47p@chr16:86768403..86768437, +
4.78e-21FFCP PHASE2:Hg19::chr17:2076002..2076026,-#_4ca89d0ccd55799e5320184d0b6dc7b0-, p@chr17:2076002..2076026
4.78e-21FFCP PHASE1:Hg19::chr17:2076002..2076026,-#_4ca89d0ccd55799e5320184d0b6dc7b0p@chr17:2076002..2076026, -
1.26e-20FFCP PHASE1:Hg19::chr1:32712897..32712909,+#_40cdc7d43231e3e268048af041dce42ep3@FAM167B
1.26e-20FFCP PHASE2:Hg19::chr1:32712897..32712909,+#_40cdc7d43231e3e268048af041dce42ep3@FAM167B
2.32e-20FFCP PHASE2:Hg19::chr11:124628392..124628427,-#_966bc2426ab5830fc1bb9e9d52161a09p@chr11:124628392..124628427, -
2.32e-20FFCP PHASE1:Hg19::chr11:124628392..124628427,-#_966bc2426ab5830fc1bb9e9d52161a09p@chr11:124628392..124628427, -
3.42e-20FFCP PHASE1:Hg19::chr3:98591021..98591026,-#_0567382b7c7058264906e7bcb35a5418p1@ENST00000487339
3.42e-20FFCP PHASE2:Hg19::chr3:98591021..98591026,-#_0567382b7c7058264906e7bcb35a5418p1@ENST00000487339
3.44e-20FFCP PHASE1:Hg19::chr19:47231340..47231383,-#_8b2d59947a9f822c6c79e8b359174a0ap@chr19:47231340..47231383, -
3.44e-20FFCP PHASE2:Hg19::chr19:47231340..47231383,-#_8b2d59947a9f822c6c79e8b359174a0ap@chr19:47231340..47231383, -
3.58e-20FFCP PHASE2:Hg19::chr19:1826957..1826984,-#_526136fcb33d10e19c62b4ed5226b243p@chr19:1826957..1826984, -
3.58e-20FFCP PHASE1:Hg19::chr19:1826957..1826984,-#_526136fcb33d10e19c62b4ed5226b243p@chr19:1826957..1826984, -
4.39e-20FFCP PHASE2:Hg19::chr4:38057595..38057624,-#_309ec1f01286eeb09a36f3b50be0ac32p@chr4:38057595..38057624, -
4.39e-20FFCP PHASE1:Hg19::chr4:38057595..38057624,-#_309ec1f01286eeb09a36f3b50be0ac32p@chr4:38057595..38057624, -
7.13e-20FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_f68f7d14345215f83342f048020dd227p@chr2:133426106..133426117, -
7.13e-20FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_f68f7d14345215f83342f048020dd227p@chr2:133426106..133426117, -
7.84e-20FFCP PHASE2:Hg19::chr9:35753821..35753835,-#_d26403ab91a979cb8e3320c99acd137ap@chr9:35753821..35753835, -
7.84e-20FFCP PHASE2:Hg19::chr15:36653709..36653720,-#_d26403ab91a979cb8e3320c99acd137ap@chr15:36653709..36653720, -
7.84e-20FFCP PHASE1:Hg19::chr9:35753821..35753835,-#_d26403ab91a979cb8e3320c99acd137ap@chr9:35753821..35753835, -
7.84e-20FFCP PHASE1:Hg19::chr15:36653709..36653720,-#_d26403ab91a979cb8e3320c99acd137ap@chr15:36653709..36653720, -
8.62e-20FFCP PHASE2:Hg19::chr4:145568170..145568180,-#_a85f81853b5fb9a2e647b8792afffc7cp@chr4:145568170..145568180, -
8.62e-20FFCP PHASE1:Hg19::chr4:145568170..145568180,-#_a85f81853b5fb9a2e647b8792afffc7cp@chr4:145568170..145568180, -
1.04e-19FFCP PHASE2:Hg19::chr19:38397228..38397266,-#_b8700712e088a4d231c578f215353fbap1@WDR87
1.04e-19FFCP PHASE1:Hg19::chr19:38397228..38397266,-#_b8700712e088a4d231c578f215353fbap1@WDR87
1.15e-19FFCP PHASE1:Hg19::chr14:91270270..91270281,-#_f8e606f9bba856b3ce2fcd8a6941b75ap@chr14:91270270..91270281, -
1.15e-19FFCP PHASE2:Hg19::chr14:91270270..91270281,-#_f8e606f9bba856b3ce2fcd8a6941b75ap@chr14:91270270..91270281, -
2.44e-19FFCP PHASE2:Hg19::chr12:52306196..52306215,+#_f07375e17eaafcdce8394d1434ce5a8dp6@ACVRL1
2.44e-19FFCP PHASE1:Hg19::chr12:52306196..52306215,+#_f07375e17eaafcdce8394d1434ce5a8dp6@ACVRL1
3.27e-19FFCP PHASE1:Hg19::chr3:43538305..43538325,-#_666b8df3b5ee86e43fd252dd91eeb28ap@chr3:43538305..43538325, -
3.27e-19FFCP PHASE2:Hg19::chr3:43538305..43538325,-#_666b8df3b5ee86e43fd252dd91eeb28ap@chr3:43538305..43538325, -
4.64e-19FFCP PHASE2:Hg19::chr17:171147..171161,+#_47d30c285a726633e095c245057ca97ep@chr17:171147..171161, +
4.64e-19FFCP PHASE1:Hg19::chr17:171147..171161,+#_47d30c285a726633e095c245057ca97ep@chr17:171147..171161, +
5.39e-19FFCP PHASE2:Hg19::chr1:22211913..22211920,+#_7a11c370c32093a82038b23370ab028bp@chr1:22211913..22211920, +
5.39e-19FFCP PHASE1:Hg19::chr1:22211913..22211920,+#_7a11c370c32093a82038b23370ab028bp@chr1:22211913..22211920, +
1.99e-18FFCP PHASE1:Hg19::chr7:27219833..27219845,-#_8b5c38414a97e98ddc3167e164f65ba9p7@HOXA10
1.99e-18FFCP PHASE2:Hg19::chr7:27219833..27219845,-#_8b5c38414a97e98ddc3167e164f65ba9p7@HOXA10
2.69e-18FFCP PHASE1:Hg19::chr1:32041957..32041990,+#_437f69039b68a603a7443320ba173005p3@TINAGL1
2.69e-18FFCP PHASE2:Hg19::chr1:32041957..32041990,+#_437f69039b68a603a7443320ba173005p3@TINAGL1
4.1e-18FFCP PHASE1:Hg19::chr6:132270228..132270243,-#_46bb073926f33dca0b244d507842e642p17@CTGF
4.1e-18FFCP PHASE2:Hg19::chr6:132270228..132270243,-#_46bb073926f33dca0b244d507842e642p17@CTGF
5.7e-18FFCP PHASE2:Hg19::chr11:940729..940745,+#_4f16e872073068a950497cd2235ec0efp5@AP2A2
5.7e-18FFCP PHASE1:Hg19::chr11:940729..940745,+#_4f16e872073068a950497cd2235ec0efp5@AP2A2
6.5e-18FFCP PHASE2:Hg19::chr19:42007093..42007107,-#_b66200b48c2a2eb30ddbb903b71e6353p@chr19:42007093..42007107, -
6.5e-18FFCP PHASE1:Hg19::chr19:42007093..42007107,-#_b66200b48c2a2eb30ddbb903b71e6353p@chr19:42007093..42007107, -
6.99e-18FFCP PHASE2:Hg19::chrX:128781853..128781866,-#_4cf2c3d56bd6ace541bafa41a145a276p@chrX:128781853..128781866, -
6.99e-18FFCP PHASE1:Hg19::chrX:128781853..128781866,-#_4cf2c3d56bd6ace541bafa41a145a276p@chrX:128781853..128781866, -
1.24e-17FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_4dbe9cb22c612065409af4327614dd68p@chr16:86604624..86604648, +
1.24e-17FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_4dbe9cb22c612065409af4327614dd68p@chr16:86604624..86604648, +