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UBERON:0004362

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Name:pharyngeal arch 1
Namespace:FANTOM
Definition:"First of six branchial arches that develops in fetal life during the fourth week of development.[1] It is located between the stomodeum and the first pharyngeal groove." [Wikipedia:First_pharyngeal_arch]
Xrefs:
links:

AAO:0010364
EHDAA2:0000006
EHDAA:573
EMAPA:16118
[ Gray48.png Gray48.png]
[ 200px-Gray48.png 200px-Gray48.png]
ncithesaurus:First_Pharyngeal_Arch
SCTID:308767008
TAO:0001595
VHOG:0000296
XAO:0000097

ZFA:0001612
Synonyms: "1st arch" RELATED [EHDAA2:0000006]
"1st pharyngeal arch" EXACT []
"arcus pharyngeus primus" RELATED LATIN [Wikipedia:First_pharyngeal_arch]
"branchial arch 1" EXACT SENSU []
"first branchial arch" EXACT SENSU []
"first pharyngeal arch" EXACT []
"first visceral arch" EXACT SENSU []
"mandibular arch" EXACT []
"visceral arch 1" EXACT SENSU []
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002539(pharyngeal arch)



Children

part of:UBERON:0007238 (1st arch maxillary component),UBERON:0010042 (1st arch mesenchyme)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004362 (pharyngeal arch 1), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr17:54893192..54893195,-#_478d85bb1133ec2d024817229b513992p14@C17orf67
5.42e-195FFCP PHASE1:Hg19::chr17:54893192..54893195,-#_478d85bb1133ec2d024817229b513992p14@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr17:54893213..54893220,-#_7eecffe7a1af54b4a0f049eee18a149bp12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893213..54893220,-#_7eecffe7a1af54b4a0f049eee18a149bp12@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr8:57353655..57353662,-#_7eecffe7a1af54b4a0f049eee18a149bp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893269..54893278,-#_7eecffe7a1af54b4a0f049eee18a149bp11@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893269..54893278,-#_7eecffe7a1af54b4a0f049eee18a149bp11@C17orf67
9.37e-99FFCP PHASE2:Hg19::chr8:57353655..57353662,-#_7eecffe7a1af54b4a0f049eee18a149bp@chr8:57353655..57353662, -
9.37e-99FFCP PHASE2:Hg19::chr17:54893292..54893300,-#_7eecffe7a1af54b4a0f049eee18a149bp13@C17orf67
9.37e-99FFCP PHASE1:Hg19::chr17:54893292..54893300,-#_7eecffe7a1af54b4a0f049eee18a149bp13@C17orf67
2.39e-66FFCP PHASE2:Hg19::chr5:75912402..75912418,-#_f320f64724ddd24a9e1c8c87f0939894p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr5:75912402..75912418,-#_f320f64724ddd24a9e1c8c87f0939894p@chr5:75912402..75912418, -
2.39e-66FFCP PHASE1:Hg19::chr4:151503647..151503656,+#_f320f64724ddd24a9e1c8c87f0939894p14@MAB21L2
2.39e-66FFCP PHASE2:Hg19::chr4:151503647..151503656,+#_f320f64724ddd24a9e1c8c87f0939894p14@MAB21L2
4.66e-66FFCP PHASE1:Hg19::chr4:151505582..151505614,+#_7b2484d74d559bc4a5b13ba0be9a315fp@chr4:151505582..151505614, +
4.66e-66FFCP PHASE2:Hg19::chr4:151505582..151505614,+#_7b2484d74d559bc4a5b13ba0be9a315fp@chr4:151505582..151505614, +
1.46e-50FFCP PHASE1:Hg19::chr3:157823323..157823328,+#_d6c3c9d5a8045da285b6161fda82c50dp17@RSRC1
1.46e-50FFCP PHASE2:Hg19::chr8:57354278..57354286,+#_d6c3c9d5a8045da285b6161fda82c50d+, p@chr8:57354278..57354286
1.46e-50FFCP PHASE2:Hg19::chr3:157823323..157823328,+#_d6c3c9d5a8045da285b6161fda82c50dp17@RSRC1
1.46e-50FFCP PHASE1:Hg19::chr8:57354278..57354286,+#_d6c3c9d5a8045da285b6161fda82c50dp@chr8:57354278..57354286, +
1.46e-50FFCP PHASE2:Hg19::chr17:54893196..54893207,-#_d6c3c9d5a8045da285b6161fda82c50dp9@C17orf67
1.46e-50FFCP PHASE1:Hg19::chr17:54893196..54893207,-#_d6c3c9d5a8045da285b6161fda82c50dp9@C17orf67
2.42e-50FFCP PHASE1:Hg19::chr8:57802672..57802682,-#_6a3e6224f049b8f9731a0be25bec351bp@chr8:57802672..57802682, -
2.42e-50FFCP PHASE2:Hg19::chr8:57802672..57802682,-#_6a3e6224f049b8f9731a0be25bec351bp@chr8:57802672..57802682, -
3.99e-50FFCP PHASE1:Hg19::chr5:75913767..75913778,-#_8b1563dd0a480448b944159f5751cb98p@chr5:75913767..75913778, -
3.99e-50FFCP PHASE1:Hg19::chr12:85673913..85673919,+#_8b1563dd0a480448b944159f5751cb98p7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr12:85673913..85673919,+#_8b1563dd0a480448b944159f5751cb98p7@ALX1
3.99e-50FFCP PHASE2:Hg19::chr17:76930661..76930674,+#_8b1563dd0a480448b944159f5751cb98p1@AK123925
3.99e-50FFCP PHASE1:Hg19::chr17:76930661..76930674,+#_8b1563dd0a480448b944159f5751cb98p1@AK123925
3.99e-50FFCP PHASE2:Hg19::chr5:75913767..75913778,-#_8b1563dd0a480448b944159f5751cb98p@chr5:75913767..75913778, -
6.58e-50FFCP PHASE2:Hg19::chr2:33519090..33519092,+#_83953bd91a2f1d03c5e183b1fa385a19p@chr2:33519090..33519092, +
6.58e-50FFCP PHASE2:Hg19::chr13:28961248..28961262,-#_83953bd91a2f1d03c5e183b1fa385a19p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr13:28961248..28961262,-#_83953bd91a2f1d03c5e183b1fa385a19p23@FLT1
6.58e-50FFCP PHASE1:Hg19::chr2:33519090..33519092,+#_83953bd91a2f1d03c5e183b1fa385a19p@chr2:33519090..33519092, +
6.62e-41FFCP PHASE1:Hg19::chr8:57354143..57354152,+#_a8d165a96ce222fd5934e04b072e348ep@chr8:57354143..57354152, +
6.62e-41FFCP PHASE1:Hg19::chr8:57353779..57353790,-#_a8d165a96ce222fd5934e04b072e348ep@chr8:57353779..57353790, -
6.62e-41FFCP PHASE2:Hg19::chr8:57354143..57354152,+#_a8d165a96ce222fd5934e04b072e348ep@chr8:57354143..57354152, +
6.62e-41FFCP PHASE2:Hg19::chr8:57353779..57353790,-#_a8d165a96ce222fd5934e04b072e348e-, p@chr8:57353779..57353790
6.62e-41FFCP PHASE1:Hg19::chr8:57353666..57353675,-#_a8d165a96ce222fd5934e04b072e348ep@chr8:57353666..57353675, -
6.62e-41FFCP PHASE2:Hg19::chr8:57353666..57353675,-#_a8d165a96ce222fd5934e04b072e348ep@chr8:57353666..57353675, -
1.48e-40FFCP PHASE2:Hg19::chr1:6615391..6615401,+#_cc93c584e126fae87033e162e7653b0dp2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr1:6615391..6615401,+#_cc93c584e126fae87033e162e7653b0dp2@TAS1R1
1.48e-40FFCP PHASE1:Hg19::chr20:49253452..49253461,-#_cc93c584e126fae87033e162e7653b0dp12@FAM65C
1.48e-40FFCP PHASE2:Hg19::chr1:75600308..75600316,+#_cc93c584e126fae87033e162e7653b0dp8@LHX8
1.48e-40FFCP PHASE2:Hg19::chr20:49253452..49253461,-#_cc93c584e126fae87033e162e7653b0dp12@FAM65C
1.48e-40FFCP PHASE1:Hg19::chr1:75600308..75600316,+#_cc93c584e126fae87033e162e7653b0dp8@LHX8
2.21e-40FFCP PHASE2:Hg19::chr5:75912831..75912842,-#_68ea1c095883480f52c394119e6e335ap@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr5:75912831..75912842,-#_68ea1c095883480f52c394119e6e335ap@chr5:75912831..75912842, -
2.21e-40FFCP PHASE1:Hg19::chr16:67687543..67687559,-#_68ea1c095883480f52c394119e6e335ap@chr16:67687543..67687559, -
2.21e-40FFCP PHASE2:Hg19::chr16:67687543..67687559,-#_68ea1c095883480f52c394119e6e335ap@chr16:67687543..67687559, -
3.3e-40FFCP PHASE1:Hg19::chr6:46190219..46190230,-#_dc19854154ae263c2f4ac0dec7ee8482p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE2:Hg19::chr6:46190219..46190230,-#_dc19854154ae263c2f4ac0dec7ee8482p@chr6:46190219..46190230, -
3.3e-40FFCP PHASE1:Hg19::chr9:125165007..125165016,+#_dc19854154ae263c2f4ac0dec7ee8482p@chr9:125165007..125165016, +
3.3e-40FFCP PHASE2:Hg19::chr9:125165007..125165016,+#_dc19854154ae263c2f4ac0dec7ee8482p@chr9:125165007..125165016, +
1.84e-34FFCP PHASE2:Hg19::chr8:57359557..57359570,-#_5180c0a38d6dbaf04721dd85fc1fa07fp5@PENK
1.84e-34FFCP PHASE2:Hg19::chr4:8594472..8594473,+#_5180c0a38d6dbaf04721dd85fc1fa07fp4@CPZ
1.84e-34FFCP PHASE2:Hg19::chr10:15760985..15760992,-#_5180c0a38d6dbaf04721dd85fc1fa07fp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr4:8594472..8594473,+#_5180c0a38d6dbaf04721dd85fc1fa07fp4@CPZ
1.84e-34FFCP PHASE1:Hg19::chr10:15760985..15760992,-#_5180c0a38d6dbaf04721dd85fc1fa07fp@chr10:15760985..15760992, -
1.84e-34FFCP PHASE1:Hg19::chr8:57359557..57359570,-#_5180c0a38d6dbaf04721dd85fc1fa07fp5@PENK
2.58e-34FFCP PHASE2:Hg19::chr14:61125018..61125037,-#_503c8cdd6a41e9ddfdc0da46ea264ffdp9@SIX1
2.58e-34FFCP PHASE1:Hg19::chr14:61125018..61125037,-#_503c8cdd6a41e9ddfdc0da46ea264ffdp9@SIX1
5.05e-34FFCP PHASE1:Hg19::chr6:134327986..134327991,-#_3bfe5fcb3a885c9be518b9d232fadb2ep@chr6:134327986..134327991, -
5.05e-34FFCP PHASE2:Hg19::chr6:134327986..134327991,-#_3bfe5fcb3a885c9be518b9d232fadb2ep@chr6:134327986..134327991, -
7.06e-34FFCP PHASE1:Hg19::chr13:58291223..58291226,+#_ab48e9eacea3c0964cfe098274e14574p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE2:Hg19::chr13:58291223..58291226,+#_ab48e9eacea3c0964cfe098274e14574p@chr13:58291223..58291226, +
7.06e-34FFCP PHASE1:Hg19::chr8:57353676..57353688,-#_ab48e9eacea3c0964cfe098274e14574-, p@chr8:57353676..57353688
7.06e-34FFCP PHASE2:Hg19::chr8:57353676..57353688,-#_ab48e9eacea3c0964cfe098274e14574p@chr8:57353676..57353688, -
9.85e-34FFCP PHASE1:Hg19::chrX:133792540..133792551,-#_c5507ff94ab1130d093e1cba43aab934p4@PLAC1
9.85e-34FFCP PHASE1:Hg19::chr5:127873659..127873667,-#_c5507ff94ab1130d093e1cba43aab934p12@FBN2
9.85e-34FFCP PHASE1:Hg19::chr5:19721484..19721507,-#_c5507ff94ab1130d093e1cba43aab934p@chr5:19721484..19721507, -
9.85e-34FFCP PHASE2:Hg19::chr5:127873659..127873667,-#_c5507ff94ab1130d093e1cba43aab934p12@FBN2
9.85e-34FFCP PHASE2:Hg19::chrX:133792540..133792551,-#_c5507ff94ab1130d093e1cba43aab934p4@PLAC1
9.85e-34FFCP PHASE2:Hg19::chr5:19721484..19721507,-#_c5507ff94ab1130d093e1cba43aab934-, p@chr5:19721484..19721507
7.48e-30FFCP PHASE2:Hg19::chr8:57353982..57353991,-#_715eca560da61cf08efa95b73ba49656p@chr8:57353982..57353991, -
7.48e-30FFCP PHASE1:Hg19::chr8:57353804..57353821,-#_715eca560da61cf08efa95b73ba49656p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE1:Hg19::chr8:57354360..57354367,+#_715eca560da61cf08efa95b73ba49656p@chr8:57354360..57354367, +
7.48e-30FFCP PHASE2:Hg19::chr8:57353804..57353821,-#_715eca560da61cf08efa95b73ba49656p@chr8:57353804..57353821, -
7.48e-30FFCP PHASE2:Hg19::chr8:57354360..57354367,+#_715eca560da61cf08efa95b73ba49656+, p@chr8:57354360..57354367
7.48e-30FFCP PHASE1:Hg19::chr8:57353982..57353991,-#_715eca560da61cf08efa95b73ba49656-, p@chr8:57353982..57353991
9.99e-30FFCP PHASE1:Hg19::chr10:15762107..15762114,-#_8efbe51384e570b1b35e58e72144568dp10@ITGA8
9.99e-30FFCP PHASE1:Hg19::chr3:157824322..157824334,-#_8efbe51384e570b1b35e58e72144568dp7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr3:157824322..157824334,-#_8efbe51384e570b1b35e58e72144568dp7@SHOX2
9.99e-30FFCP PHASE2:Hg19::chr10:15762107..15762114,-#_8efbe51384e570b1b35e58e72144568dp10@ITGA8
1.33e-29FFCP PHASE2:Hg19::chr17:79071218..79071221,-#_8d4a66f65fe7ee497ab7481014436274p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE1:Hg19::chr22:28193943..28193956,-#_8d4a66f65fe7ee497ab7481014436274p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE2:Hg19::chr22:28193943..28193956,-#_8d4a66f65fe7ee497ab7481014436274p@chr22:28193943..28193956, -
1.33e-29FFCP PHASE1:Hg19::chrX:132670143..132670152,-#_8d4a66f65fe7ee497ab7481014436274p@chrX:132670143..132670152, -
1.33e-29FFCP PHASE1:Hg19::chr17:79071218..79071221,-#_8d4a66f65fe7ee497ab7481014436274p@chr17:79071218..79071221, -
1.33e-29FFCP PHASE2:Hg19::chrX:132670143..132670152,-#_8d4a66f65fe7ee497ab7481014436274p@chrX:132670143..132670152, -
1.78e-29FFCP PHASE2:Hg19::chr1:21904551..21904569,-#_6a8e72ab3d4b2a68ee209595570d44f8p@chr1:21904551..21904569, -
1.78e-29FFCP PHASE1:Hg19::chr1:21904551..21904569,-#_6a8e72ab3d4b2a68ee209595570d44f8p@chr1:21904551..21904569, -
3.16e-29FFCP PHASE1:Hg19::chr14:89044406..89044416,+#_546c226781f0ea3efbea62c156a3ebc4p@chr14:89044406..89044416, +
3.16e-29FFCP PHASE1:Hg19::chr8:57359975..57359992,-#_546c226781f0ea3efbea62c156a3ebc4p@chr8:57359975..57359992, -
3.16e-29FFCP PHASE2:Hg19::chr8:57359975..57359992,-#_546c226781f0ea3efbea62c156a3ebc4-, p@chr8:57359975..57359992
3.16e-29FFCP PHASE2:Hg19::chr1:156470861..156470868,-#_546c226781f0ea3efbea62c156a3ebc4p18@MEF2D
3.16e-29FFCP PHASE1:Hg19::chr1:156470861..156470868,-#_546c226781f0ea3efbea62c156a3ebc4p18@MEF2D
3.16e-29FFCP PHASE2:Hg19::chr14:89044406..89044416,+#_546c226781f0ea3efbea62c156a3ebc4p@chr14:89044406..89044416, +
4.2e-29FFCP PHASE1:Hg19::chr4:151503350..151503358,+#_90195c617544e34bba2f4772b8ebe477p11@MAB21L2
4.2e-29FFCP PHASE2:Hg19::chr4:151503350..151503358,+#_90195c617544e34bba2f4772b8ebe477p11@MAB21L2










Property "Property value" (as page type) with input value "UBPROP:0000001 "The first of the series of bony or cartilaginous arches that develop in the walls of the mouth cavity and pharynx of the embryo.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.