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UBERON:0004880

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Name:chordamesoderm
Namespace:FANTOM
Definition:"The central region of trunk mesoderm. This tissue forms the notochord" [UBERON:cjm]
Xrefs:
links:

AAO:0000478
chordamesoderm:[1]
EFO:0003426
TAO:0000091

ZFA:0000091
Synonyms: "axial chorda mesoderm" EXACT [ZFA:0000091]
"chorda mesoderm" EXACT []
"dorsal mesoderm" EXACT [UBERONREF:0000002]
"presumptive notochord" EXACT [ZFA:0000091]
Comments:note that WP treats this as synonym of axial mesoderm

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0000922(embryo),UBERON:0003068(axial mesoderm)



Children

develops from:UBERON:0002328 (notochord)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004880 (chordamesoderm), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
8.26e-98FFCP PHASE1:Hg19::chr3:174737010..174737023,+#_04804a6035813f474aa2cd65f157988fp@chr3:174737010..174737023, +
8.26e-98FFCP PHASE2:Hg19::chr3:174737010..174737023,+#_04804a6035813f474aa2cd65f157988fp@chr3:174737010..174737023, +
3.03e-84FFCP PHASE2:Hg19::chr20:21687193..21687206,+#_d5f62b6399e7e50fd0b65a9d64062609p4@PAX1
3.03e-84FFCP PHASE1:Hg19::chr20:21687193..21687206,+#_d5f62b6399e7e50fd0b65a9d64062609p4@PAX1
2.39e-66FFCP PHASE2:Hg19::chr9:33028063..33028067,-#_b85240482f7d6aab27acac2a1ffcf584-, p@chr9:33028063..33028067
2.39e-66FFCP PHASE1:Hg19::chr9:33028063..33028067,-#_b85240482f7d6aab27acac2a1ffcf584p@chr9:33028063..33028067, -
5.46e-60FFCP PHASE1:Hg19::chr5:30104176..30104187,-#_b1e89bf65064d0724f7d5388059db3d9p@chr5:30104176..30104187, -
5.46e-60FFCP PHASE2:Hg19::chr5:30104176..30104187,-#_b1e89bf65064d0724f7d5388059db3d9p@chr5:30104176..30104187, -
9.77e-45FFCP PHASE2:Hg19::chr2:241987807..241987808,+#_69d400e86031c6bde26319e68a25179fp22@SNED1
9.77e-45FFCP PHASE1:Hg19::chr2:241987807..241987808,+#_69d400e86031c6bde26319e68a25179fp22@SNED1
6.64e-41FFCP PHASE1:Hg19::chr2:242004292..242004308,+#_8515b98e725edcb654cfcc3ce7a74071p15@SNED1
6.64e-41FFCP PHASE2:Hg19::chr2:242004292..242004308,+#_8515b98e725edcb654cfcc3ce7a74071p15@SNED1
1.31e-40FFCP PHASE1:Hg19::chr1:19811132..19811155,-#_9c4ce72e24e713d32de84e49da76438ap20@CAPZB
1.31e-40FFCP PHASE2:Hg19::chr1:19811132..19811155,-#_9c4ce72e24e713d32de84e49da76438ap20@CAPZB
1.8e-38FFCP PHASE2:Hg19::chr2:12248310..12248334,-#_06320e83f12abfe5fb5c8dff9c51ca9fp@chr2:12248310..12248334, -
1.8e-38FFCP PHASE1:Hg19::chr2:12248310..12248334,-#_06320e83f12abfe5fb5c8dff9c51ca9fp@chr2:12248310..12248334, -
2.75e-34FFCP PHASE2:Hg19::chr14:61190754..61190776,-#_36ac732b005ddfc0166e6dcd9bccc46ep6@SIX4
2.75e-34FFCP PHASE1:Hg19::chr14:61190754..61190776,-#_36ac732b005ddfc0166e6dcd9bccc46ep6@SIX4
5.96e-34FFCP PHASE2:Hg19::chr11:93468399..93468405,-#_b15c8bd94313b14eca4bfc0784746e29p19@TAF1D, p1@SNORA40
5.96e-34FFCP PHASE1:Hg19::chr13:51101468..51101499,-#_b15c8bd94313b14eca4bfc0784746e29p1@ENST00000428276
5.96e-34FFCP PHASE1:Hg19::chr4:88727274..88727278,+#_b15c8bd94313b14eca4bfc0784746e29p@chr4:88727274..88727278, +
5.96e-34FFCP PHASE1:Hg19::chr11:93468399..93468405,-#_b15c8bd94313b14eca4bfc0784746e29p19@TAF1D, p1@SNORA40
5.96e-34FFCP PHASE2:Hg19::chr4:88727274..88727278,+#_b15c8bd94313b14eca4bfc0784746e29p@chr4:88727274..88727278, +
5.96e-34FFCP PHASE2:Hg19::chr13:51101468..51101499,-#_b15c8bd94313b14eca4bfc0784746e29p1@ENST00000428276
2.09e-33FFCP PHASE1:Hg19::chr4:13546130..13546145,-#_576ea65401b6ee08628e3737f32442f4p4@NKX3-2
2.09e-33FFCP PHASE2:Hg19::chr4:13546130..13546145,-#_576ea65401b6ee08628e3737f32442f4p4@NKX3-2
4.01e-31FFCP PHASE2:Hg19::chr7:18832913..18832946,+#_fa9ba24d7c172d6928392a564ac38467p19@HDAC9
4.01e-31FFCP PHASE1:Hg19::chr7:18832913..18832946,+#_fa9ba24d7c172d6928392a564ac38467p19@HDAC9
1.98e-30FFCP PHASE2:Hg19::chr2:241897125..241897142,-#_004d9dff4d1667066275305c1be3a077p@chr2:241897125..241897142, -
1.98e-30FFCP PHASE1:Hg19::chr2:241897125..241897142,-#_004d9dff4d1667066275305c1be3a077p@chr2:241897125..241897142, -
4.84e-30FFCP PHASE2:Hg19::chr3:80727046..80727051,-#_f54876704a77e0b1023e24c172782c1bp@chr3:80727046..80727051, -
4.84e-30FFCP PHASE1:Hg19::chr3:80727046..80727051,-#_f54876704a77e0b1023e24c172782c1bp@chr3:80727046..80727051, -
7.46e-30FFCP PHASE1:Hg19::chr7:158224707..158224729,-#_4e8e522f4a1d186d9e208ea7d5fc30c3-, p@chr7:158224707..158224729
7.46e-30FFCP PHASE2:Hg19::chr7:158224707..158224729,-#_4e8e522f4a1d186d9e208ea7d5fc30c3p@chr7:158224707..158224729, -
1.48e-29FFCP PHASE1:Hg19::chr1:65888177..65888194,+#_3c21000ec16fc802f6abe6a69aa9bf6cp@chr1:65888177..65888194, +
1.48e-29FFCP PHASE2:Hg19::chr1:65888177..65888194,+#_3c21000ec16fc802f6abe6a69aa9bf6c+, p@chr1:65888177..65888194
2.72e-28FFCP PHASE2:Hg19::chr14:100848311..100848321,+#_baddf03b92d746c51c8c9297d9234245p5@WDR25
2.72e-28FFCP PHASE1:Hg19::chr14:100848311..100848321,+#_baddf03b92d746c51c8c9297d9234245p5@WDR25
3.26e-27FFCP PHASE2:Hg19::chr1:78695274..78695292,+#_f480bfae7decf2a59fb600532ddc3645p1@MGC27382
3.26e-27FFCP PHASE1:Hg19::chr1:78695274..78695292,+#_f480bfae7decf2a59fb600532ddc3645p1@MGC27382
6.92e-27FFCP PHASE1:Hg19::chr1:19778678..19778689,-#_cd6baccb11e9111ddb689453c491d6eep@chr1:19778678..19778689, -
6.92e-27FFCP PHASE2:Hg19::chr1:19778678..19778689,-#_cd6baccb11e9111ddb689453c491d6ee-, p@chr1:19778678..19778689
1.46e-26FFCP PHASE1:Hg19::chr7:18832834..18832859,+#_63bf3b8b40e4a4aa8a2575cc713cdc00p18@HDAC9
1.46e-26FFCP PHASE2:Hg19::chr7:18832834..18832859,+#_63bf3b8b40e4a4aa8a2575cc713cdc00p18@HDAC9
1.74e-26FFCP PHASE1:Hg19::chr4:156129991..156130013,+#_51a9a690c125bbece3103a12f0ce8206p2@NPY2R
1.74e-26FFCP PHASE2:Hg19::chr4:156129991..156130013,+#_51a9a690c125bbece3103a12f0ce8206p2@NPY2R
7.41e-26FFCP PHASE1:Hg19::chr14:61113228..61113233,-#_210403069c1b791bf80a1d8d22e14b20p@chr14:61113228..61113233, -
7.41e-26FFCP PHASE2:Hg19::chr14:61113228..61113233,-#_210403069c1b791bf80a1d8d22e14b20p@chr14:61113228..61113233, -
2.04e-25FFCP PHASE1:Hg19::chr7:27212374..27212387,-#_cda5a78c9dcec163f1a82bbd3629e9b1p12@HOXA10
2.04e-25FFCP PHASE2:Hg19::chr7:27212374..27212387,-#_cda5a78c9dcec163f1a82bbd3629e9b1p12@HOXA10
6.22e-25FFCP PHASE1:Hg19::chr14:23574186..23574212,-#_5bf8e3feeda1cf191440dd02d75f5b2bp1@uc010aki.1
6.22e-25FFCP PHASE2:Hg19::chr14:23574186..23574212,-#_5bf8e3feeda1cf191440dd02d75f5b2bp1@uc010aki.1
9.49e-25FFCP PHASE2:Hg19::chr20:21686317..21686350,+#_38d23d35ab2382d79a7d05785cc77397p1@PAX1
9.49e-25FFCP PHASE1:Hg19::chr20:21686317..21686350,+#_38d23d35ab2382d79a7d05785cc77397p1@PAX1
4.58e-24FFCP PHASE2:Hg19::chr5:140887761..140887777,+#_5e2b7b6b0a788df18cf264b6f75e6564p@chr5:140887761..140887777, +
4.58e-24FFCP PHASE1:Hg19::chr5:140887761..140887777,+#_5e2b7b6b0a788df18cf264b6f75e6564p@chr5:140887761..140887777, +
5.35e-24FFCP PHASE2:Hg19::chr20:21686290..21686311,+#_8b3e6d33de83f17a8a581df6a0a90202p2@PAX1
5.35e-24FFCP PHASE1:Hg19::chr20:21686290..21686311,+#_8b3e6d33de83f17a8a581df6a0a90202p2@PAX1
8.55e-24FFCP PHASE1:Hg19::chr7:18832759..18832786,+#_230564567e06f1c9c3a80cac46a6b8b2p16@HDAC9
8.55e-24FFCP PHASE2:Hg19::chr7:18832759..18832786,+#_230564567e06f1c9c3a80cac46a6b8b2p16@HDAC9
2.01e-23FFCP PHASE2:Hg19::chr4:77068930..77068959,-#_f257289c2fa48463ddc1537c5199d8dbp4@NUP54
2.01e-23FFCP PHASE1:Hg19::chr4:77068930..77068959,-#_f257289c2fa48463ddc1537c5199d8dbp4@NUP54
2.28e-23FFCP PHASE1:Hg19::chr4:13546632..13546662,-#_8de8bc1fb3e296fe2cd4088556f65c26p1@NKX3-2
2.28e-23FFCP PHASE2:Hg19::chr4:13546632..13546662,-#_8de8bc1fb3e296fe2cd4088556f65c26p1@NKX3-2
3.27e-23FFCP PHASE1:Hg19::chr14:23574164..23574179,-#_dad9bc2a30f1158e880b77c15b6b6d52p3@uc010aki.1
3.27e-23FFCP PHASE2:Hg19::chr14:23574164..23574179,-#_dad9bc2a30f1158e880b77c15b6b6d52p3@uc010aki.1
1.25e-22FFCP PHASE2:Hg19::chr1:78695343..78695353,+#_dbc63beeb1d1ee0439a77309bb905b95p2@ENST00000413519
1.25e-22FFCP PHASE1:Hg19::chr1:78695343..78695353,+#_dbc63beeb1d1ee0439a77309bb905b95p2@ENST00000413519
1.46e-22FFCP PHASE1:Hg19::chr9:123239747..123239765,-#_5f88ff0fa634fb5aa6fea7c56a9ab353p12@CDK5RAP2
1.46e-22FFCP PHASE2:Hg19::chr9:123239747..123239765,-#_5f88ff0fa634fb5aa6fea7c56a9ab353p12@CDK5RAP2
9.47e-22FFCP PHASE1:Hg19::chr1:171076859..171076870,+#_4379cbe851f921df328c9b5e989258fbp@chr1:171076859..171076870, +
9.47e-22FFCP PHASE2:Hg19::chr1:171076859..171076870,+#_4379cbe851f921df328c9b5e989258fbp@chr1:171076859..171076870, +
1.35e-21FFCP PHASE2:Hg19::chr7:100202784..100202796,-#_35f30a2fbd1f47730b1c8c1c5e29fcccp@chr7:100202784..100202796, -
1.35e-21FFCP PHASE1:Hg19::chr7:100202784..100202796,-#_35f30a2fbd1f47730b1c8c1c5e29fcccp@chr7:100202784..100202796, -
3.83e-21FFCP PHASE1:Hg19::chr14:37126814..37126834,+#_b071b4f9e451ae84ba76462c7e64feb3p4@PAX9
3.83e-21FFCP PHASE2:Hg19::chr14:37126814..37126834,+#_b071b4f9e451ae84ba76462c7e64feb3p4@PAX9
4.02e-21FFCP PHASE1:Hg19::chr3:176765178..176765190,-#_d692d3631b95ef817205451dd537ea67p@chr3:176765178..176765190, -
4.02e-21FFCP PHASE2:Hg19::chr3:176765178..176765190,-#_d692d3631b95ef817205451dd537ea67p@chr3:176765178..176765190, -
4.06e-21FFCP PHASE1:Hg19::chr1:19810947..19810977,-#_6561f4d122b752cb996efc461dc88aeap17@CAPZB
4.06e-21FFCP PHASE2:Hg19::chr1:19810947..19810977,-#_6561f4d122b752cb996efc461dc88aeap17@CAPZB
5.43e-21FFCP PHASE2:Hg19::chr12:54422268..54422278,+#_e7a5f7e6ad9532c8163d41bd4f272c35p8@HOXC6
5.43e-21FFCP PHASE1:Hg19::chr12:54422268..54422278,+#_e7a5f7e6ad9532c8163d41bd4f272c35p8@HOXC6
4.94e-20FFCP PHASE2:Hg19::chr17:38613285..38613298,-#_cb4a5f677a09dd57c7ddc00097d1afabp@chr17:38613285..38613298, -
4.94e-20FFCP PHASE1:Hg19::chr17:38613285..38613298,-#_cb4a5f677a09dd57c7ddc00097d1afabp@chr17:38613285..38613298, -
9.53e-20FFCP PHASE1:Hg19::chr20:43343596..43343608,+#_557386db5673b27531999b3bc7bbe013p6@WISP2
9.53e-20FFCP PHASE2:Hg19::chr20:43343596..43343608,+#_557386db5673b27531999b3bc7bbe013p6@WISP2
1.46e-19FFCP PHASE1:Hg19::chr1:78958320..78958332,+#_a782e9cce51d8fd0410fc8871b6ddff1p2@PTGFR
1.46e-19FFCP PHASE2:Hg19::chr1:78958320..78958332,+#_a782e9cce51d8fd0410fc8871b6ddff1p2@PTGFR
2.04e-19FFCP PHASE1:Hg19::chr4:70707689..70707711,-#_9bd36f72c830a5fdd97c89ef01921e9ap@chr4:70707689..70707711, -
2.04e-19FFCP PHASE2:Hg19::chr4:70707689..70707711,-#_9bd36f72c830a5fdd97c89ef01921e9ap@chr4:70707689..70707711, -
3.75e-19FFCP PHASE1:Hg19::chr14:37126870..37126882,+#_3dcaa8c7fd991d053e8f24c4fbd8515ep1@ENST00000555639
3.75e-19FFCP PHASE2:Hg19::chr14:37126870..37126882,+#_3dcaa8c7fd991d053e8f24c4fbd8515ep1@ENST00000555639
4.68e-19FFCP PHASE1:Hg19::chr2:12246664..12246694,+#_dce1b9ed9e87eb581f08e40f7c02d350p1@ENST00000449986
4.68e-19FFCP PHASE2:Hg19::chr2:12246664..12246694,+#_dce1b9ed9e87eb581f08e40f7c02d350p1@ENST00000449986
1.04e-18FFCP PHASE1:Hg19::chr3:158390171..158390180,-#_987e30939dcbb096f71fabd2ec903edap3@LXN
1.04e-18FFCP PHASE2:Hg19::chr3:158390171..158390180,-#_987e30939dcbb096f71fabd2ec903edap3@LXN
5.12e-18FFCP PHASE1:Hg19::chr6:112375300..112375334,+#_60c38cda633deff37487c4e4773518bep1@WISP3
5.12e-18FFCP PHASE2:Hg19::chr6:112375300..112375334,+#_60c38cda633deff37487c4e4773518bep1@WISP3
9.14e-18FFCP PHASE1:Hg19::chr8:77595678..77595688,+#_bdb76b0944e285b32e346345b0767406p9@ZFHX4
9.14e-18FFCP PHASE2:Hg19::chr8:77595678..77595688,+#_bdb76b0944e285b32e346345b0767406p9@ZFHX4