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UBERON:0005876

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Name:undifferentiated genital tubercle
Namespace:FANTOM
Definition:"A genital tubercle is a body of tissue present in the development of the urinary and reproductive organs. It forms in the ventral, caudal region of mammalian embryos of both sexes, and eventually develops into a phallus. In the human fetus the genital tubercle develops around week 4 of gestation, and by week 9 becomes recognizably either a clitoris or penis. This should not be confused with the sinus tubercle which is a proliferation of endoderm induced by paramesonephic ducts. Even after the phallus is developed, the term genital tubercle remains, but only as the terminal end of it[2], which develops into either the glans penis or the glans clitoridis. The genital tubercle is sensitive to dihydrotestosterone and rich in 5-alpha-reductase, so that the amount of fetal testosterone present after the second month is a major determinant of phallus size at birth.[WP]." [Wikipedia:Genital_tubercle]
Xrefs:
links:

EHDAA2:0000705
EHDAA:5925
EMAPA:17382
[ Gray1119.png Gray1119.png]

SCTID:308798005
Synonyms: "tuberculum phallicum; tuberculum genitale" RELATED LATIN [Wikipedia:Genital_tubercle]
Comments:Taxon notes: todo - add taxon constraints

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005423(developing anatomical structure)
develops_from:UBERON:0004874(somatopleure)
part_of:UBERON:0009196(indifferent external genitalia)



Children

develops from:UBERON:0000989 (penis)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005876 (undifferentiated genital tubercle), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
9.37e-99FFCP PHASE1:Hg19::chr12:53068923..53068932,-#_5e7db072831b5150ffb0710557ecfa49p@chr12:53068923..53068932, -
9.37e-99FFCP PHASE2:Hg19::chr12:53068889..53068898,-#_5e7db072831b5150ffb0710557ecfa49p@chr12:53068889..53068898, -
9.37e-99FFCP PHASE2:Hg19::chr12:53068923..53068932,-#_5e7db072831b5150ffb0710557ecfa49p@chr12:53068923..53068932, -
9.37e-99FFCP PHASE1:Hg19::chr12:53068889..53068898,-#_5e7db072831b5150ffb0710557ecfa49p@chr12:53068889..53068898, -
2.55e-98FFCP PHASE2:Hg19::chr9:79379348..79379360,+#_1438dee19778d515afcb329931874abbp1@PCA3
2.55e-98FFCP PHASE1:Hg19::chr17:38976407..38976413,-#_1438dee19778d515afcb329931874abbp20@KRT10
2.55e-98FFCP PHASE2:Hg19::chr16:15811123..15811133,+#_1438dee19778d515afcb329931874abbp@chr16:15811123..15811133, +
2.55e-98FFCP PHASE2:Hg19::chr15:45803320..45803343,+#_1438dee19778d515afcb329931874abbp1@HMGN2P46
2.55e-98FFCP PHASE1:Hg19::chr17:38975820..38975830,-#_1438dee19778d515afcb329931874abbp10@KRT10
2.55e-98FFCP PHASE2:Hg19::chr17:38976407..38976413,-#_1438dee19778d515afcb329931874abbp20@KRT10
2.55e-98FFCP PHASE2:Hg19::chr17:38975820..38975830,-#_1438dee19778d515afcb329931874abbp10@KRT10
2.55e-98FFCP PHASE1:Hg19::chr8:72252453..72252458,-#_1438dee19778d515afcb329931874abbp@chr8:72252453..72252458, -
2.55e-98FFCP PHASE2:Hg19::chr6:110964453..110964459,-#_1438dee19778d515afcb329931874abbp16@CDK19
2.55e-98FFCP PHASE1:Hg19::chr5:59672718..59672753,-#_1438dee19778d515afcb329931874abbp@chr5:59672718..59672753, -
2.55e-98FFCP PHASE2:Hg19::chr5:59672718..59672753,-#_1438dee19778d515afcb329931874abbp@chr5:59672718..59672753, -
2.55e-98FFCP PHASE2:Hg19::chr8:72252453..72252458,-#_1438dee19778d515afcb329931874abbp@chr8:72252453..72252458, -
2.55e-98FFCP PHASE1:Hg19::chr15:45803320..45803343,+#_1438dee19778d515afcb329931874abbp1@HMGN2P46
2.55e-98FFCP PHASE1:Hg19::chr9:79379348..79379360,+#_1438dee19778d515afcb329931874abbp1@PCA3
2.55e-98FFCP PHASE1:Hg19::chr16:15811123..15811133,+#_1438dee19778d515afcb329931874abbp@chr16:15811123..15811133, +
2.55e-98FFCP PHASE1:Hg19::chr6:110964453..110964459,-#_1438dee19778d515afcb329931874abbp16@CDK19
1.23e-66FFCP PHASE2:Hg19::chr12:53068552..53068579,-#_1b14772be9e034606441087efa061c41p@chr12:53068552..53068579, -
1.23e-66FFCP PHASE1:Hg19::chr14:74454889..74454892,-#_1b14772be9e034606441087efa061c41p10@ENTPD5
1.23e-66FFCP PHASE1:Hg19::chr12:53068552..53068579,-#_1b14772be9e034606441087efa061c41p@chr12:53068552..53068579, -
1.23e-66FFCP PHASE2:Hg19::chr14:74454889..74454892,-#_1b14772be9e034606441087efa061c41p10@ENTPD5
2.39e-66FFCP PHASE2:Hg19::chr19:51517928..51517936,-#_2f0a70bf8ef0c61d532e03445871595cp2@AK026045
2.39e-66FFCP PHASE1:Hg19::chr1:61416169..61416181,-#_2f0a70bf8ef0c61d532e03445871595cp@chr1:61416169..61416181, -
2.39e-66FFCP PHASE2:Hg19::chr17:38975796..38975805,-#_2f0a70bf8ef0c61d532e03445871595cp13@KRT10
2.39e-66FFCP PHASE1:Hg19::chr17:38976909..38976919,-#_2f0a70bf8ef0c61d532e03445871595cp@chr17:38976909..38976919, -
2.39e-66FFCP PHASE1:Hg19::chr2:179399981..179399988,-#_2f0a70bf8ef0c61d532e03445871595cp@chr2:179399981..179399988, -
2.39e-66FFCP PHASE2:Hg19::chr17:38976909..38976919,-#_2f0a70bf8ef0c61d532e03445871595cp@chr17:38976909..38976919, -
2.39e-66FFCP PHASE1:Hg19::chr2:179393635..179393640,-#_2f0a70bf8ef0c61d532e03445871595cp167@TTN
2.39e-66FFCP PHASE2:Hg19::chr17:33640639..33640650,+#_2f0a70bf8ef0c61d532e03445871595cp@chr17:33640639..33640650, +
2.39e-66FFCP PHASE2:Hg19::chr2:179393635..179393640,-#_2f0a70bf8ef0c61d532e03445871595cp167@TTN
2.39e-66FFCP PHASE1:Hg19::chr17:38975850..38975854,-#_2f0a70bf8ef0c61d532e03445871595cp19@KRT10
2.39e-66FFCP PHASE1:Hg19::chr19:51517928..51517936,-#_2f0a70bf8ef0c61d532e03445871595cp2@AK026045
2.39e-66FFCP PHASE2:Hg19::chr2:179399981..179399988,-#_2f0a70bf8ef0c61d532e03445871595cp@chr2:179399981..179399988, -
2.39e-66FFCP PHASE1:Hg19::chr1:209545365..209545377,+#_2f0a70bf8ef0c61d532e03445871595cp1@ENST00000447257
2.39e-66FFCP PHASE1:Hg19::chr17:38978526..38978535,+#_2f0a70bf8ef0c61d532e03445871595cp@chr17:38978526..38978535, +
2.39e-66FFCP PHASE1:Hg19::chr4:186434325..186434339,-#_2f0a70bf8ef0c61d532e03445871595cp@chr4:186434325..186434339, -
2.39e-66FFCP PHASE2:Hg19::chr17:38975850..38975854,-#_2f0a70bf8ef0c61d532e03445871595cp19@KRT10
2.39e-66FFCP PHASE1:Hg19::chr6:152585338..152585342,-#_2f0a70bf8ef0c61d532e03445871595cp@chr6:152585338..152585342, -
2.39e-66FFCP PHASE2:Hg19::chr19:38664309..38664322,+#_2f0a70bf8ef0c61d532e03445871595cp@chr19:38664309..38664322, +
2.39e-66FFCP PHASE2:Hg19::chr17:38978526..38978535,+#_2f0a70bf8ef0c61d532e03445871595cp@chr17:38978526..38978535, +
2.39e-66FFCP PHASE2:Hg19::chr6:152585338..152585342,-#_2f0a70bf8ef0c61d532e03445871595cp@chr6:152585338..152585342, -
2.39e-66FFCP PHASE1:Hg19::chr17:33640639..33640650,+#_2f0a70bf8ef0c61d532e03445871595cp@chr17:33640639..33640650, +
2.39e-66FFCP PHASE1:Hg19::chr19:38664309..38664322,+#_2f0a70bf8ef0c61d532e03445871595cp@chr19:38664309..38664322, +
2.39e-66FFCP PHASE2:Hg19::chr1:209545365..209545377,+#_2f0a70bf8ef0c61d532e03445871595cp1@ENST00000447257
2.39e-66FFCP PHASE1:Hg19::chr17:38975796..38975805,-#_2f0a70bf8ef0c61d532e03445871595cp13@KRT10
2.39e-66FFCP PHASE2:Hg19::chr4:186434325..186434339,-#_2f0a70bf8ef0c61d532e03445871595cp@chr4:186434325..186434339, -
2.39e-66FFCP PHASE2:Hg19::chr1:61416169..61416181,-#_2f0a70bf8ef0c61d532e03445871595cp@chr1:61416169..61416181, -
4.66e-66FFCP PHASE1:Hg19::chr5:66771311..66771320,-#_83ff3f07055979f07c17f4d1de996ac6p2@ENST00000508512
4.66e-66FFCP PHASE2:Hg19::chr2:152520302..152520308,-#_83ff3f07055979f07c17f4d1de996ac6p@chr2:152520302..152520308, -
4.66e-66FFCP PHASE1:Hg19::chr10:94301107..94301111,-#_83ff3f07055979f07c17f4d1de996ac6p18@IDE
4.66e-66FFCP PHASE1:Hg19::chr2:152520302..152520308,-#_83ff3f07055979f07c17f4d1de996ac6p@chr2:152520302..152520308, -
4.66e-66FFCP PHASE2:Hg19::chr2:152520333..152520340,-#_83ff3f07055979f07c17f4d1de996ac6p@chr2:152520333..152520340, -
4.66e-66FFCP PHASE2:Hg19::chr5:66771311..66771320,-#_83ff3f07055979f07c17f4d1de996ac6p2@ENST00000508512
4.66e-66FFCP PHASE2:Hg19::chr2:75869014..75869047,+#_83ff3f07055979f07c17f4d1de996ac6p@chr2:75869014..75869047, +
4.66e-66FFCP PHASE2:Hg19::chr2:179542558..179542568,-#_83ff3f07055979f07c17f4d1de996ac6p@chr2:179542558..179542568, -
4.66e-66FFCP PHASE1:Hg19::chr2:179542558..179542568,-#_83ff3f07055979f07c17f4d1de996ac6p@chr2:179542558..179542568, -
4.66e-66FFCP PHASE1:Hg19::chr2:152520333..152520340,-#_83ff3f07055979f07c17f4d1de996ac6p@chr2:152520333..152520340, -
4.66e-66FFCP PHASE1:Hg19::chr2:152548420..152548425,-#_83ff3f07055979f07c17f4d1de996ac6p@chr2:152548420..152548425, -
4.66e-66FFCP PHASE2:Hg19::chr3:52875783..52875812,-#_83ff3f07055979f07c17f4d1de996ac6p7@TMEM110
4.66e-66FFCP PHASE2:Hg19::chr10:94301107..94301111,-#_83ff3f07055979f07c17f4d1de996ac6p18@IDE
4.66e-66FFCP PHASE2:Hg19::chr2:152548420..152548425,-#_83ff3f07055979f07c17f4d1de996ac6p@chr2:152548420..152548425, -
4.66e-66FFCP PHASE1:Hg19::chr3:52875783..52875812,-#_83ff3f07055979f07c17f4d1de996ac6p7@TMEM110
4.66e-66FFCP PHASE2:Hg19::chr13:103555720..103555725,+#_83ff3f07055979f07c17f4d1de996ac6p@chr13:103555720..103555725, +
4.66e-66FFCP PHASE1:Hg19::chr2:75869014..75869047,+#_83ff3f07055979f07c17f4d1de996ac6p@chr2:75869014..75869047, +
4.66e-66FFCP PHASE2:Hg19::chr16:34571309..34571314,-#_83ff3f07055979f07c17f4d1de996ac6p@chr16:34571309..34571314, -
4.66e-66FFCP PHASE1:Hg19::chr13:103555720..103555725,+#_83ff3f07055979f07c17f4d1de996ac6p@chr13:103555720..103555725, +
4.66e-66FFCP PHASE1:Hg19::chr16:34571309..34571314,-#_83ff3f07055979f07c17f4d1de996ac6p@chr16:34571309..34571314, -
1.46e-50FFCP PHASE1:Hg19::chr2:178753478..178753487,-#_a2e04505860d65be0c16040e12e87e4ep10@PDE11A
1.46e-50FFCP PHASE2:Hg19::chr2:178753478..178753487,-#_a2e04505860d65be0c16040e12e87e4ep10@PDE11A
1.46e-50FFCP PHASE2:Hg19::chr17:4448859..4448864,-#_a2e04505860d65be0c16040e12e87e4ep@chr17:4448859..4448864, -
1.46e-50FFCP PHASE1:Hg19::chr17:4448859..4448864,-#_a2e04505860d65be0c16040e12e87e4ep@chr17:4448859..4448864, -
2.42e-50FFCP PHASE1:Hg19::chr16:56598984..56598990,+#_4c39809d372b12014dff8d4f2f025fbap1@MT4
2.42e-50FFCP PHASE1:Hg19::chr10:15646574..15646578,-#_4c39809d372b12014dff8d4f2f025fbap11@ITGA8
2.42e-50FFCP PHASE1:Hg19::chr2:152554090..152554096,-#_4c39809d372b12014dff8d4f2f025fbap@chr2:152554090..152554096, -
2.42e-50FFCP PHASE1:Hg19::chr17:10421962..10421969,-#_4c39809d372b12014dff8d4f2f025fbap2@MYH1
2.42e-50FFCP PHASE2:Hg19::chr2:152554090..152554096,-#_4c39809d372b12014dff8d4f2f025fbap@chr2:152554090..152554096, -
2.42e-50FFCP PHASE1:Hg19::chr10:71351909..71351911,+#_4c39809d372b12014dff8d4f2f025fbap@chr10:71351909..71351911, +
2.42e-50FFCP PHASE1:Hg19::chr2:170783857..170783860,+#_4c39809d372b12014dff8d4f2f025fbap@chr2:170783857..170783860, +
2.42e-50FFCP PHASE2:Hg19::chr10:15646574..15646578,-#_4c39809d372b12014dff8d4f2f025fbap11@ITGA8
2.42e-50FFCP PHASE2:Hg19::chr17:10421962..10421969,-#_4c39809d372b12014dff8d4f2f025fbap2@MYH1
2.42e-50FFCP PHASE2:Hg19::chr16:56598984..56598990,+#_4c39809d372b12014dff8d4f2f025fbap1@MT4
2.42e-50FFCP PHASE1:Hg19::chr20:33451327..33451358,-#_4c39809d372b12014dff8d4f2f025fbap4@GGT7
2.42e-50FFCP PHASE2:Hg19::chr10:71351909..71351911,+#_4c39809d372b12014dff8d4f2f025fbap@chr10:71351909..71351911, +
2.42e-50FFCP PHASE2:Hg19::chr20:33451327..33451358,-#_4c39809d372b12014dff8d4f2f025fbap4@GGT7
2.42e-50FFCP PHASE2:Hg19::chr2:170783857..170783860,+#_4c39809d372b12014dff8d4f2f025fbap@chr2:170783857..170783860, +
3.99e-50FFCP PHASE2:Hg19::chr6:2744431..2744440,-#_93bee6b1718b7b6363a1a1c80287be41p@chr6:2744431..2744440, -
3.99e-50FFCP PHASE1:Hg19::chr12:10856739..10856746,-#_93bee6b1718b7b6363a1a1c80287be41p36@CSDA
3.99e-50FFCP PHASE2:Hg19::chr17:38976882..38976895,-#_93bee6b1718b7b6363a1a1c80287be41p@chr17:38976882..38976895, -
3.99e-50FFCP PHASE2:Hg19::chr12:10856739..10856746,-#_93bee6b1718b7b6363a1a1c80287be41p36@CSDA
3.99e-50FFCP PHASE2:Hg19::chr1:152483278..152483280,+#_93bee6b1718b7b6363a1a1c80287be41p1@LCE5A
3.99e-50FFCP PHASE1:Hg19::chr1:152483278..152483280,+#_93bee6b1718b7b6363a1a1c80287be41p1@LCE5A
3.99e-50FFCP PHASE2:Hg19::chr2:152393727..152393736,-#_93bee6b1718b7b6363a1a1c80287be41p@chr2:152393727..152393736, -
3.99e-50FFCP PHASE1:Hg19::chr5:66771335..66771342,-#_93bee6b1718b7b6363a1a1c80287be41p3@ENST00000508512
3.99e-50FFCP PHASE1:Hg19::chr2:179454661..179454668,-#_93bee6b1718b7b6363a1a1c80287be41p@chr2:179454661..179454668, -
3.99e-50FFCP PHASE1:Hg19::chr2:152393727..152393736,-#_93bee6b1718b7b6363a1a1c80287be41p@chr2:152393727..152393736, -
3.99e-50FFCP PHASE2:Hg19::chr2:179454661..179454668,-#_93bee6b1718b7b6363a1a1c80287be41p@chr2:179454661..179454668, -
3.99e-50FFCP PHASE2:Hg19::chr6:56362490..56362515,-#_93bee6b1718b7b6363a1a1c80287be41p60@DST