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UBERON:0006965

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Name:vascular cord
Namespace:FANTOM
Definition:"The vascular cord is the primordial vasculature that will develop into blood vessels by the process of tubulogenesis[GO]. The vascular cord is composed of angioblast or vascular endothelial cells in a solid linear mass called a cord. The cord then undergoes tubulogenesis to form the lumen of the vessels[ZFA]." [GO:0072360, ZFA:0005077]
Xrefs:
links:

EFO:0003709
TAO:0005077

ZFA:0005077

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0005423(developing anatomical structure)
part_of:UBERON:0014903(primordial vasculature)



Children

develops from:UBERON:0001981 (blood vessel)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0006965 (vascular cord), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
4.37e-99FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_b913e9dc8913bf229ce06fcdf393cf13p2@SOX17
4.37e-99FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_b913e9dc8913bf229ce06fcdf393cf13p2@SOX17
3.03e-83FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_200bbf89388f7526f788e7a6d6ef08b0p@chr12:96830430..96830450, +
3.03e-83FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_200bbf89388f7526f788e7a6d6ef08b0p@chr12:96830430..96830450, +
9.39e-72FFCP PHASE2:Hg19::chr4:70653649..70653665,-#_9535d6e5a9651d04ff45c440fceed6a7p4@SULT1B1
9.39e-72FFCP PHASE1:Hg19::chr4:70653649..70653665,-#_9535d6e5a9651d04ff45c440fceed6a7p4@SULT1B1
1.22e-71FFCP PHASE1:Hg19::chr22:21138343..21138378,+#_135c8d5560e76a0d9a80391c3076bfb9p@chr22:21138343..21138378, +
1.22e-71FFCP PHASE2:Hg19::chr22:21138343..21138378,+#_135c8d5560e76a0d9a80391c3076bfb9p@chr22:21138343..21138378, +
3.75e-70FFCP PHASE2:Hg19::chr4:70653673..70653688,-#_fc2a06ab8870509917de207dfc829571p3@SULT1B1
3.75e-70FFCP PHASE1:Hg19::chr4:70653673..70653688,-#_fc2a06ab8870509917de207dfc829571p3@SULT1B1
4.26e-70FFCP PHASE1:Hg19::chr3:30334038..30334060,+#_71091439963c7c985e77e02e19557e25p@chr3:30334038..30334060, +
4.26e-70FFCP PHASE2:Hg19::chr3:30334038..30334060,+#_71091439963c7c985e77e02e19557e25p@chr3:30334038..30334060, +
1.65e-69FFCP PHASE1:Mm9::chr8:69221163..69221172,+#_792fb79b008c6e00e5b5573313eb4812p6@Npy1r
1.65e-69FFCP PHASE2:Mm9::chr8:69221163..69221172,+#_792fb79b008c6e00e5b5573313eb4812p6@Npy1r
3.42e-69FFCP PHASE1:Hg19::chr7:22629318..22629324,+#_f80a85af9fcc3e12d37906d10596f903p1@ENST00000439823
3.42e-69FFCP PHASE2:Hg19::chr7:22629318..22629324,+#_f80a85af9fcc3e12d37906d10596f903p1@ENST00000439823
1.32e-66FFCP PHASE1:Hg19::chr5:54281535..54281547,-#_e3d2951e659caad85f4666840da03c6cp2@ESM1
1.32e-66FFCP PHASE2:Hg19::chr5:54281535..54281547,-#_e3d2951e659caad85f4666840da03c6cp2@ESM1
1.79e-66FFCP PHASE1:Hg19::chr1:186946626..186946652,+#_39ac3d6537f52fae9407ed4ac89f2e83p@chr1:186946626..186946652, +
1.79e-66FFCP PHASE2:Hg19::chr1:186946626..186946652,+#_39ac3d6537f52fae9407ed4ac89f2e83p@chr1:186946626..186946652, +
2.82e-66FFCP PHASE2:Hg19::chr1:21606171..21606188,-#_e4cf60432cda130112a19d2a4f0d1511p10@ECE1
2.82e-66FFCP PHASE1:Hg19::chr1:21606171..21606188,-#_e4cf60432cda130112a19d2a4f0d1511p10@ECE1
1.57e-65FFCP PHASE1:Hg19::chr4:145567563..145567572,+#_016654caf94772431c750cc76a7dc3e0p8@HHIP
1.57e-65FFCP PHASE2:Hg19::chr4:145567563..145567572,+#_016654caf94772431c750cc76a7dc3e0p8@HHIP
4.84e-64FFCP PHASE2:Hg19::chr10:4823096..4823144,-#_3a34a81bf760d4ae58f959618890da96p@chr10:4823096..4823144, -
4.84e-64FFCP PHASE1:Hg19::chr10:4823096..4823144,-#_3a34a81bf760d4ae58f959618890da96p@chr10:4823096..4823144, -
1.6e-63FFCP PHASE1:Hg19::chr4:145566841..145566862,+#_595bb79dcc90acf279df53462f8fc6a3p10@HHIP
1.6e-63FFCP PHASE2:Hg19::chr4:145566841..145566862,+#_595bb79dcc90acf279df53462f8fc6a3p10@HHIP
1.6e-62FFCP PHASE2:Hg19::chr22:21138313..21138336,+#_ba03282307c61f0748cd4313329b008bp@chr22:21138313..21138336, +
1.6e-62FFCP PHASE1:Hg19::chr22:21138313..21138336,+#_ba03282307c61f0748cd4313329b008bp@chr22:21138313..21138336, +
3.56e-60FFCP PHASE1:Hg19::chr11:102668200..102668228,-#_6bf52174b75c728948a4eb77da99daabp4@MMP1
3.56e-60FFCP PHASE2:Hg19::chr11:102668200..102668228,-#_6bf52174b75c728948a4eb77da99daabp4@MMP1
1.21e-59FFCP PHASE1:Hg19::chr4:145567374..145567390,+#_e2ce049ed4f600cb69af1a2ab44ac3ffp6@HHIP
1.21e-59FFCP PHASE2:Hg19::chr4:145567374..145567390,+#_e2ce049ed4f600cb69af1a2ab44ac3ffp6@HHIP
1.43e-59FFCP PHASE1:Hg19::chr5:54281512..54281517,-#_27f1b9fce5ab22be0073df3e31f87cd5p4@ESM1
1.43e-59FFCP PHASE2:Hg19::chr5:54281512..54281517,-#_27f1b9fce5ab22be0073df3e31f87cd5p4@ESM1
7.93e-59FFCP PHASE1:Hg19::chr4:145567426..145567455,+#_eb30122ded6b5defa5f92116e558f108p5@HHIP
7.93e-59FFCP PHASE2:Hg19::chr4:145567426..145567455,+#_eb30122ded6b5defa5f92116e558f108p5@HHIP
1.41e-58FFCP PHASE1:Hg19::chr3:149258838..149258848,-#_7966385a34d7eb30a73e9602538287bdp24@WWTR1
1.41e-58FFCP PHASE2:Hg19::chr3:149258838..149258848,-#_7966385a34d7eb30a73e9602538287bdp24@WWTR1
5.62e-58FFCP PHASE2:Hg19::chr11:86649508..86649546,-#_8c10462fb23352e69ce75e06a64bfc06p@chr11:86649508..86649546, -
5.62e-58FFCP PHASE1:Hg19::chr11:86649508..86649546,-#_8c10462fb23352e69ce75e06a64bfc06p@chr11:86649508..86649546, -
8.9e-57FFCP PHASE1:Hg19::chr4:145567391..145567425,+#_858fafde64c3199ee3e91e633eaf7b1cp4@HHIP
8.9e-57FFCP PHASE2:Hg19::chr4:145567391..145567425,+#_858fafde64c3199ee3e91e633eaf7b1cp4@HHIP
4.2e-56FFCP PHASE1:Mm9::chr8:69221150..69221161,+#_3a309fc0bdb76a918f5c4dcfe575cb2cp5@Npy1r
4.2e-56FFCP PHASE2:Mm9::chr8:69221150..69221161,+#_3a309fc0bdb76a918f5c4dcfe575cb2cp5@Npy1r
4.2e-56FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_3a309fc0bdb76a918f5c4dcfe575cb2cp4@Il6st
4.2e-56FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_3a309fc0bdb76a918f5c4dcfe575cb2cp4@Il6st
4.77e-56FFCP PHASE2:Hg19::chr4:145567356..145567368,+#_62203b5a12f18ad1948028dfb357b1dfp7@HHIP
4.77e-56FFCP PHASE1:Hg19::chr4:145567356..145567368,+#_62203b5a12f18ad1948028dfb357b1dfp7@HHIP
1.07e-55FFCP PHASE1:Hg19::chr11:102667477..102667490,-#_173fec449deca11db474f55674977ca6p@chr11:102667477..102667490, -
1.07e-55FFCP PHASE2:Hg19::chr11:102667477..102667490,-#_173fec449deca11db474f55674977ca6p@chr11:102667477..102667490, -
1.11e-55FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_d32cefbadae9d013d67e341e860191a8p@chr2:65009852..65009866, -
1.11e-55FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_d32cefbadae9d013d67e341e860191a8p@chr2:65009852..65009866, -
2.0e-55FFCP PHASE1:Hg19::chr11:102668178..102668206,+#_9fec100729c2e61fa19520e13c0d157bp@chr11:102668178..102668206, +
2.0e-55FFCP PHASE2:Hg19::chr11:102668178..102668206,+#_9fec100729c2e61fa19520e13c0d157bp@chr11:102668178..102668206, +
9.51e-55FFCP PHASE1:Hg19::chr4:86700590..86700615,+#_e81e283b9fee75f828a3a18411946829p@chr4:86700590..86700615, +
9.51e-55FFCP PHASE2:Hg19::chr4:86700590..86700615,+#_e81e283b9fee75f828a3a18411946829p@chr4:86700590..86700615, +
1.16e-54FFCP PHASE2:Hg19::chr14:63671393..63671437,+#_3bf04f5d1660510816d5b398b0ee3656p2@RHOJ
1.16e-54FFCP PHASE1:Hg19::chr14:63671393..63671437,+#_3bf04f5d1660510816d5b398b0ee3656p2@RHOJ
5.43e-54FFCP PHASE1:Hg19::chr11:102662162..102662217,-#_9fb9eff841dafb88a5e2176ddc2e649dp@chr11:102662162..102662217, -
5.43e-54FFCP PHASE2:Hg19::chr11:102662162..102662217,-#_9fb9eff841dafb88a5e2176ddc2e649dp@chr11:102662162..102662217, -
1.56e-53FFCP PHASE1:Hg19::chr11:102668074..102668126,-#_d3382fef4f078899a2cad8d134fe67e5p3@MMP1
1.56e-53FFCP PHASE2:Hg19::chr11:102668074..102668126,-#_d3382fef4f078899a2cad8d134fe67e5p3@MMP1
2.27e-53FFCP PHASE1:Hg19::chr11:128562673..128562716,-#_411e1a18538a32da3674e47c07907b55p@chr11:128562673..128562716, -
2.27e-53FFCP PHASE2:Hg19::chr11:128562673..128562716,-#_411e1a18538a32da3674e47c07907b55p@chr11:128562673..128562716, -
5.18e-53FFCP PHASE2:Hg19::chr4:7846444..7846449,-#_c81949b85b9c4478c433f33fb895d784p@chr4:7846444..7846449, -
5.18e-53FFCP PHASE1:Hg19::chr4:7846444..7846449,-#_c81949b85b9c4478c433f33fb895d784p@chr4:7846444..7846449, -
1.64e-52FFCP PHASE2:Mm9::chr11:50416871..50416882,+#_59b3be80ecb8f91c48f4098cae8b82f4p5@Adamts2
1.64e-52FFCP PHASE1:Mm9::chrX:160839744..160839754,+#_59b3be80ecb8f91c48f4098cae8b82f4p@chrX:160839744..160839754, +
1.64e-52FFCP PHASE2:Mm9::chr2:112043522..112043530,-#_59b3be80ecb8f91c48f4098cae8b82f4p@chr2:112043522..112043530, -
1.64e-52FFCP PHASE1:Mm9::chr2:112043522..112043530,-#_59b3be80ecb8f91c48f4098cae8b82f4p@chr2:112043522..112043530, -
1.64e-52FFCP PHASE2:Mm9::chr17:14802633..14802637,-#_59b3be80ecb8f91c48f4098cae8b82f4p@chr17:14802633..14802637, -
1.64e-52FFCP PHASE1:Mm9::chr8:69228447..69228492,+#_59b3be80ecb8f91c48f4098cae8b82f4p@chr8:69228447..69228492, +
1.64e-52FFCP PHASE2:Mm9::chr17:14827154..14827169,-#_59b3be80ecb8f91c48f4098cae8b82f4p@chr17:14827154..14827169, -
1.64e-52FFCP PHASE2:Mm9::chr17:87574327..87574332,+#_59b3be80ecb8f91c48f4098cae8b82f4+, p@chr17:87574327..87574332
1.64e-52FFCP PHASE1:Mm9::chr17:14827154..14827169,-#_59b3be80ecb8f91c48f4098cae8b82f4p@chr17:14827154..14827169, -
1.64e-52FFCP PHASE1:Mm9::chr17:14802633..14802637,-#_59b3be80ecb8f91c48f4098cae8b82f4p@chr17:14802633..14802637, -
1.64e-52FFCP PHASE1:Mm9::chr2:178190171..178190178,+#_59b3be80ecb8f91c48f4098cae8b82f4p@chr2:178190171..178190178, +
1.64e-52FFCP PHASE1:Mm9::chr11:50416871..50416882,+#_59b3be80ecb8f91c48f4098cae8b82f4p5@Adamts2
1.64e-52FFCP PHASE2:Mm9::chrX:160839744..160839754,+#_59b3be80ecb8f91c48f4098cae8b82f4p@chrX:160839744..160839754, +
1.64e-52FFCP PHASE1:Mm9::chr17:87574327..87574332,+#_59b3be80ecb8f91c48f4098cae8b82f4p@chr17:87574327..87574332, +
1.64e-52FFCP PHASE2:Mm9::chr8:69228447..69228492,+#_59b3be80ecb8f91c48f4098cae8b82f4p@chr8:69228447..69228492, +
1.64e-52FFCP PHASE2:Mm9::chr2:178190171..178190178,+#_59b3be80ecb8f91c48f4098cae8b82f4p@chr2:178190171..178190178, +
4.12e-52FFCP PHASE1:Hg19::chr11:102668016..102668028,-#_50deb1786d4173efde2e39fc27b534aap5@MMP1
4.12e-52FFCP PHASE2:Hg19::chr11:102668016..102668028,-#_50deb1786d4173efde2e39fc27b534aap5@MMP1
9.8e-52FFCP PHASE1:Hg19::chr11:102661517..102661541,-#_be9bd30d847261ed1db373adfb43e8cap@chr11:102661517..102661541, -
9.8e-52FFCP PHASE2:Hg19::chr11:102661517..102661541,-#_be9bd30d847261ed1db373adfb43e8cap@chr11:102661517..102661541, -
1.64e-51FFCP PHASE2:Hg19::chr14:23236579..23236596,+#_3ceddd3133c15fd42e42f4e8b979b528p5@OXA1L
1.64e-51FFCP PHASE1:Hg19::chr14:23236579..23236596,+#_3ceddd3133c15fd42e42f4e8b979b528p5@OXA1L
2.14e-51FFCP PHASE2:Hg19::chr4:145567461..145567482,+#_b732de3a0b95ab42406116b7411ad68cp9@HHIP
2.14e-51FFCP PHASE1:Hg19::chr4:145567461..145567482,+#_b732de3a0b95ab42406116b7411ad68cp9@HHIP
6.64e-51FFCP PHASE1:Hg19::chr4:54931911..54931926,-#_3fccc9358e491fcae27f9245a23c7ddep@chr4:54931911..54931926, -
6.64e-51FFCP PHASE2:Hg19::chr4:54931911..54931926,-#_3fccc9358e491fcae27f9245a23c7ddep@chr4:54931911..54931926, -
7.65e-51FFCP PHASE2:Hg19::chr4:145567538..145567544,+#_47021fc04cb45254478bb0f1683bec6cp13@HHIP
7.65e-51FFCP PHASE1:Hg19::chr4:145567538..145567544,+#_47021fc04cb45254478bb0f1683bec6cp13@HHIP
2.55e-50FFCP PHASE1:Hg19::chr11:102668708..102668742,+#_c26c7d57fc4f4b945aa630872b327986p@chr11:102668708..102668742, +
2.55e-50FFCP PHASE2:Hg19::chr11:102668708..102668742,+#_c26c7d57fc4f4b945aa630872b327986p@chr11:102668708..102668742, +
7.98e-50FFCP PHASE2:Hg19::chr6:53359400..53359406,+#_b3aa0fb740535df08139f2534e14ff40p@chr6:53359400..53359406, +
7.98e-50FFCP PHASE1:Hg19::chr6:53359400..53359406,+#_b3aa0fb740535df08139f2534e14ff40+, p@chr6:53359400..53359406