Personal tools

UBERON:0007123

From FANTOM5_SSTAR

Jump to: navigation, search

Name:pharyngeal pouch 2
Namespace:FANTOM
Definition:"The second pouch between the second and third arches. Contributes to the middle ear, epithelial lining of Crypts (spaces) of the palatine tonsils, supplied by the facial nerve[WP]" [PMID:16313389, Wikipedia:Pharyngeal_pouch_(embryology)#Second_pouch]
Xrefs:
links:

AAO:0011115
EFO:0003633
EHDAA2:0000061
EMAPA:16275
ncithesaurus:Second_Pharyngeal_Pouch
RETIRED_EHDAA2:0000060
SCTID:345349000
TAO:0001130
VHOG:0000967
XAO:0000247

ZFA:0001130
Synonyms: "2nd arch branchial pouch" EXACT [RETIRED_EHDAA2:0000060]
"2nd arch branchial pouch endoderm" EXACT [EHDAA2:0000061]
"pharyngeal pouches 2" EXACT PLURAL [ZFA:0001130]
"second arch pharyngeal pouch" EXACT [OBOL:automatic]
"second visceral pouch" EXACT [XAO:0000247]
"visceral pouch 2" EXACT [XAO:0000247]
Alt_id: UBERON:0005715
Subset: vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0004117(pharyngeal pouch)



Children

develops from:UBERON:0003091 (thyroid primordium)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology




Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0007123 (pharyngeal pouch 2), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
7.76e-118FFCP PHASE1:Hg19::chr8:11333461..11333472,-#_f03b86f4e725aad6a95700d7548036dap@chr8:11333461..11333472, -
7.76e-118FFCP PHASE2:Hg19::chr8:11333461..11333472,-#_f03b86f4e725aad6a95700d7548036dap@chr8:11333461..11333472, -
6.64e-89FFCP PHASE1:Hg19::chr8:11333445..11333459,-#_356d78224cc757cca03c177654641f15p@chr8:11333445..11333459, -
6.64e-89FFCP PHASE2:Hg19::chr8:11333445..11333459,-#_356d78224cc757cca03c177654641f15p@chr8:11333445..11333459, -
3.18e-79FFCP PHASE1:Hg19::chr14:36645825..36645840,-#_bd69ee190bbaf061f2cbb40e5e443bc8p5@ENST00000556013
3.18e-79FFCP PHASE2:Hg19::chr14:36645825..36645840,-#_bd69ee190bbaf061f2cbb40e5e443bc8p5@ENST00000556013
3.49e-79FFCP PHASE2:Hg19::chr8:133898957..133898963,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133898957..133898963, -
3.49e-79FFCP PHASE1:Hg19::chr2:1457477..1457487,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1457477..1457487, +
3.49e-79FFCP PHASE2:Hg19::chr14:21560489..21560506,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr14:21560489..21560506, -
3.49e-79FFCP PHASE2:Hg19::chr8:134145732..134145736,+#_20a8e25dd036699ac7e17ab087a84a3fp27@TG
3.49e-79FFCP PHASE2:Hg19::chr2:1440068..1440076,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1440068..1440076, +
3.49e-79FFCP PHASE1:Hg19::chr19:20473429..20473445,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr19:20473429..20473445, +
3.49e-79FFCP PHASE2:Hg19::chr8:133981694..133981700,+#_20a8e25dd036699ac7e17ab087a84a3fp35@TG
3.49e-79FFCP PHASE2:Hg19::chr8:133900307..133900325,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133900307..133900325, -
3.49e-79FFCP PHASE1:Hg19::chr9:100616714..100616732,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr9:100616714..100616732, +
3.49e-79FFCP PHASE2:Hg19::chr8:133895164..133895167,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133895164..133895167, +
3.49e-79FFCP PHASE1:Hg19::chr8:133898904..133898911,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133898904..133898911, +
3.49e-79FFCP PHASE2:Hg19::chr8:134108463..134108470,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:134108463..134108470, +
3.49e-79FFCP PHASE2:Hg19::chr2:134788828..134788834,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:134788828..134788834, -
3.49e-79FFCP PHASE1:Hg19::chr2:1417430..1417444,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1417430..1417444, +
3.49e-79FFCP PHASE1:Hg19::chr21:39644214..39644219,+#_20a8e25dd036699ac7e17ab087a84a3fp21@KCNJ15
3.49e-79FFCP PHASE1:Hg19::chr7:88388628..88388669,+#_20a8e25dd036699ac7e17ab087a84a3fp6@ZNF804B
3.49e-79FFCP PHASE1:Hg19::chr6:43837226..43837237,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr6:43837226..43837237, -
3.49e-79FFCP PHASE2:Hg19::chr2:1426850..1426859,+#_20a8e25dd036699ac7e17ab087a84a3fp10@TPO
3.49e-79FFCP PHASE2:Hg19::chr8:133898734..133898737,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133898734..133898737, +
3.49e-79FFCP PHASE1:Hg19::chr8:133878995..133879011,+#_20a8e25dd036699ac7e17ab087a84a3fp32@TG
3.49e-79FFCP PHASE1:Hg19::chr8:133900347..133900354,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133900347..133900354, -
3.49e-79FFCP PHASE1:Hg19::chr8:134145732..134145736,+#_20a8e25dd036699ac7e17ab087a84a3fp27@TG
3.49e-79FFCP PHASE2:Hg19::chr8:133978809..133978829,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133978809..133978829, +
3.49e-79FFCP PHASE1:Hg19::chr8:133981694..133981700,+#_20a8e25dd036699ac7e17ab087a84a3fp35@TG
3.49e-79FFCP PHASE1:Hg19::chr8:134108463..134108470,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:134108463..134108470, +
3.49e-79FFCP PHASE2:Hg19::chr4:88047429..88047437,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr4:88047429..88047437, +
3.49e-79FFCP PHASE2:Hg19::chr7:88388628..88388669,+#_20a8e25dd036699ac7e17ab087a84a3fp6@ZNF804B
3.49e-79FFCP PHASE2:Hg19::chr7:107301340..107301345,+#_20a8e25dd036699ac7e17ab087a84a3fp13@SLC26A4
3.49e-79FFCP PHASE1:Hg19::chr8:133895229..133895236,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133895229..133895236, -
3.49e-79FFCP PHASE2:Hg19::chr2:1457500..1457511,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1457500..1457511, +
3.49e-79FFCP PHASE1:Hg19::chr2:134788853..134788858,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:134788853..134788858, -
3.49e-79FFCP PHASE2:Hg19::chr8:133899004..133899013,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133899004..133899013, -
3.49e-79FFCP PHASE1:Hg19::chr2:1457500..1457511,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1457500..1457511, +
3.49e-79FFCP PHASE2:Hg19::chr8:133885414..133885420,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133885414..133885420, -
3.49e-79FFCP PHASE1:Hg19::chr14:81421428..81421431,+#_20a8e25dd036699ac7e17ab087a84a3fp11@TSHR
3.49e-79FFCP PHASE2:Hg19::chr2:1440089..1440096,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1440089..1440096, +
3.49e-79FFCP PHASE2:Hg19::chr14:81421428..81421431,+#_20a8e25dd036699ac7e17ab087a84a3fp11@TSHR
3.49e-79FFCP PHASE2:Hg19::chr8:133981703..133981711,+#_20a8e25dd036699ac7e17ab087a84a3fp31@TG
3.49e-79FFCP PHASE1:Hg19::chr8:133900606..133900611,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133900606..133900611, +
3.49e-79FFCP PHASE2:Hg19::chr8:133900339..133900344,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133900339..133900344, -
3.49e-79FFCP PHASE2:Hg19::chr8:133906083..133906088,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133906083..133906088, +
3.49e-79FFCP PHASE1:Hg19::chr7:107301447..107301451,+#_20a8e25dd036699ac7e17ab087a84a3fp23@SLC26A4
3.49e-79FFCP PHASE2:Hg19::chr8:133895195..133895206,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133895195..133895206, +
3.49e-79FFCP PHASE1:Hg19::chr8:133883693..133883699,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133883693..133883699, -
3.49e-79FFCP PHASE1:Hg19::chr8:133898763..133898768,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133898763..133898768, -
3.49e-79FFCP PHASE2:Hg19::chr6:148533199..148533206,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr6:148533199..148533206, +
3.49e-79FFCP PHASE1:Hg19::chr1:36771641..36771644,+#_20a8e25dd036699ac7e17ab087a84a3fp11@SH3D21
3.49e-79FFCP PHASE2:Hg19::chr8:133935716..133935719,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133935716..133935719, +
3.49e-79FFCP PHASE2:Hg19::chr14:67998625..67998628,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr14:67998625..67998628, -
3.49e-79FFCP PHASE1:Hg19::chr8:133978809..133978829,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133978809..133978829, +
3.49e-79FFCP PHASE2:Hg19::chr8:133898904..133898911,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133898904..133898911, +
3.49e-79FFCP PHASE1:Hg19::chr8:133894753..133894756,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133894753..133894756, -
3.49e-79FFCP PHASE2:Hg19::chr8:133948038..133948045,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133948038..133948045, +
3.49e-79FFCP PHASE1:Hg19::chr16:66420861..66420868,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr16:66420861..66420868, +
3.49e-79FFCP PHASE1:Hg19::chr2:1426812..1426834,+#_20a8e25dd036699ac7e17ab087a84a3fp5@TPO
3.49e-79FFCP PHASE1:Hg19::chr8:133900431..133900436,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133900431..133900436, +
3.49e-79FFCP PHASE2:Hg19::chr8:134125750..134125765,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:134125750..134125765, +
3.49e-79FFCP PHASE2:Hg19::chr2:1417344..1417367,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1417344..1417367, +
3.49e-79FFCP PHASE1:Hg19::chr8:133906083..133906088,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133906083..133906088, +
3.49e-79FFCP PHASE1:Hg19::chr8:133981703..133981711,+#_20a8e25dd036699ac7e17ab087a84a3fp31@TG
3.49e-79FFCP PHASE2:Hg19::chr8:134107312..134107315,+#_20a8e25dd036699ac7e17ab087a84a3fp46@TG
3.49e-79FFCP PHASE1:Hg19::chr8:133885307..133885312,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133885307..133885312, +
3.49e-79FFCP PHASE2:Hg19::chr9:100615454..100615457,-#_20a8e25dd036699ac7e17ab087a84a3f-, p@chr9:100615454..100615457
3.49e-79FFCP PHASE2:Hg19::chr7:107301406..107301418,+#_20a8e25dd036699ac7e17ab087a84a3fp5@SLC26A4
3.49e-79FFCP PHASE2:Hg19::chr8:133878995..133879011,+#_20a8e25dd036699ac7e17ab087a84a3fp32@TG
3.49e-79FFCP PHASE1:Hg19::chr8:133935716..133935719,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133935716..133935719, +
3.49e-79FFCP PHASE1:Hg19::chr2:1459933..1459941,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1459933..1459941, +
3.49e-79FFCP PHASE1:Hg19::chr8:133895057..133895065,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133895057..133895065, +
3.49e-79FFCP PHASE1:Hg19::chr6:148533199..148533206,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr6:148533199..148533206, +
3.49e-79FFCP PHASE2:Hg19::chr2:1459933..1459941,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1459933..1459941, +
3.49e-79FFCP PHASE1:Hg19::chr8:133899413..133899418,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133899413..133899418, +
3.49e-79FFCP PHASE1:Hg19::chr2:1440068..1440076,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1440068..1440076, +
3.49e-79FFCP PHASE2:Hg19::chr8:133981720..133981727,+#_20a8e25dd036699ac7e17ab087a84a3fp21@TG
3.49e-79FFCP PHASE2:Hg19::chr8:133900347..133900354,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133900347..133900354, -
3.49e-79FFCP PHASE2:Hg19::chr8:133906121..133906132,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133906121..133906132, +
3.49e-79FFCP PHASE2:Hg19::chr8:133895229..133895236,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133895229..133895236, -
3.49e-79FFCP PHASE1:Hg19::chr8:134125750..134125765,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:134125750..134125765, +
3.49e-79FFCP PHASE2:Hg19::chr22:31521904..31521930,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr22:31521904..31521930, +
3.49e-79FFCP PHASE1:Hg19::chr8:133948038..133948045,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133948038..133948045, +
3.49e-79FFCP PHASE2:Hg19::chr2:134788853..134788858,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:134788853..134788858, -
3.49e-79FFCP PHASE2:Hg19::chr9:100616714..100616732,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr9:100616714..100616732, +
3.49e-79FFCP PHASE1:Hg19::chr8:133882027..133882038,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133882027..133882038, +
3.49e-79FFCP PHASE1:Hg19::chr8:134107312..134107315,+#_20a8e25dd036699ac7e17ab087a84a3fp46@TG
3.49e-79FFCP PHASE2:Hg19::chr15:64421903..64421920,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr15:64421903..64421920, +
3.49e-79FFCP PHASE2:Hg19::chr8:133900606..133900611,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133900606..133900611, +
3.49e-79FFCP PHASE1:Hg19::chr8:133894780..133894789,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133894780..133894789, +
3.49e-79FFCP PHASE2:Hg19::chr8:133898763..133898768,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133898763..133898768, -
3.49e-79FFCP PHASE1:Hg19::chr8:133899244..133899254,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133899244..133899254, -
3.49e-79FFCP PHASE1:Hg19::chr2:1426850..1426859,+#_20a8e25dd036699ac7e17ab087a84a3fp10@TPO
3.49e-79FFCP PHASE2:Hg19::chr8:133980132..133980143,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133980132..133980143, +
3.49e-79FFCP PHASE2:Hg19::chr8:133883693..133883699,-#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133883693..133883699, -
3.49e-79FFCP PHASE2:Hg19::chr2:1417430..1417444,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr2:1417430..1417444, +
3.49e-79FFCP PHASE1:Hg19::chr8:133906121..133906132,+#_20a8e25dd036699ac7e17ab087a84a3fp@chr8:133906121..133906132, +
3.49e-79FFCP PHASE1:Hg19::chr7:107301340..107301345,+#_20a8e25dd036699ac7e17ab087a84a3fp13@SLC26A4










Property "Property value" (as page type) with input value "UBPROP:0000001 "Second of the pharyngeal (endodermal) evaginations between the visceral arches from which the Eustachian tube is derived; pouches 2-4 open as gill slits.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.