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UBERON:0009661

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Name:midbrain nucleus
Namespace:FANTOM
Definition:"Nucleus located in the midbrain." [ZFIN:curator]
Xrefs:
links:

SCTID:279285003
TAO:0002209

ZFA:0001665

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0002308(nucleus of brain)
part_of:UBERON:0001891(midbrain)



Children

is a:UBERON:0002038 (substantia nigra)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0009661 (midbrain nucleus), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
9.37e-99FFCP PHASE1:Hg19::chr10:68718064..68718067,-#_52ad9112fb8ee0a77a9927b55aa04396p@chr10:68718064..68718067, -
9.37e-99FFCP PHASE1:Hg19::chr4:56229918..56229919,-#_52ad9112fb8ee0a77a9927b55aa04396p@chr4:56229918..56229919, -
9.37e-99FFCP PHASE2:Hg19::chr1:24915966..24915971,+#_52ad9112fb8ee0a77a9927b55aa04396p5@C1orf130
9.37e-99FFCP PHASE1:Hg19::chr1:24915966..24915971,+#_52ad9112fb8ee0a77a9927b55aa04396p5@C1orf130
9.37e-99FFCP PHASE2:Hg19::chr9:139916913..139916917,+#_52ad9112fb8ee0a77a9927b55aa04396+, p@chr9:139916913..139916917
9.37e-99FFCP PHASE2:Hg19::chr10:68718064..68718067,-#_52ad9112fb8ee0a77a9927b55aa04396p@chr10:68718064..68718067, -
9.37e-99FFCP PHASE2:Hg19::chr4:56229918..56229919,-#_52ad9112fb8ee0a77a9927b55aa04396p@chr4:56229918..56229919, -
9.37e-99FFCP PHASE1:Hg19::chr9:139916913..139916917,+#_52ad9112fb8ee0a77a9927b55aa04396p@chr9:139916913..139916917, +
9.37e-99FFCP PHASE1:Hg19::chr10:62149979..62149980,-#_52ad9112fb8ee0a77a9927b55aa04396p59@ANK3
9.37e-99FFCP PHASE2:Hg19::chr10:62149979..62149980,-#_52ad9112fb8ee0a77a9927b55aa04396p59@ANK3
2.55e-98FFCP PHASE1:Hg19::chr1:65776926..65776928,+#_1166e58076a5caada2325b4f7b11ac8bp@chr1:65776926..65776928, +
2.55e-98FFCP PHASE1:Hg19::chr5:57935348..57935354,-#_1166e58076a5caada2325b4f7b11ac8bp@chr5:57935348..57935354, -
2.55e-98FFCP PHASE2:Hg19::chr18:74702556..74702558,-#_1166e58076a5caada2325b4f7b11ac8bp@chr18:74702556..74702558, -
2.55e-98FFCP PHASE1:Hg19::chr18:74702556..74702558,-#_1166e58076a5caada2325b4f7b11ac8bp@chr18:74702556..74702558, -
2.55e-98FFCP PHASE2:Hg19::chr1:65776926..65776928,+#_1166e58076a5caada2325b4f7b11ac8bp@chr1:65776926..65776928, +
2.55e-98FFCP PHASE2:Hg19::chr5:57935348..57935354,-#_1166e58076a5caada2325b4f7b11ac8bp@chr5:57935348..57935354, -
1.23e-66FFCP PHASE1:Hg19::chr10:22967066..22967069,-#_f97d63962233db5346e9d86739692524p@chr10:22967066..22967069, -
1.23e-66FFCP PHASE1:Hg19::chr16:81170013..81170024,-#_f97d63962233db5346e9d86739692524p6@PKD1L2
1.23e-66FFCP PHASE1:Hg19::chr8:53312058..53312067,-#_f97d63962233db5346e9d86739692524p@chr8:53312058..53312067, -
1.23e-66FFCP PHASE1:Hg19::chr16:57309513..57309516,-#_f97d63962233db5346e9d86739692524p@chr16:57309513..57309516, -
1.23e-66FFCP PHASE2:Hg19::chr16:57309513..57309516,-#_f97d63962233db5346e9d86739692524p@chr16:57309513..57309516, -
1.23e-66FFCP PHASE2:Hg19::chr8:53312058..53312067,-#_f97d63962233db5346e9d86739692524p@chr8:53312058..53312067, -
1.23e-66FFCP PHASE2:Hg19::chr16:81170013..81170024,-#_f97d63962233db5346e9d86739692524p6@PKD1L2
1.23e-66FFCP PHASE2:Hg19::chr10:22967066..22967069,-#_f97d63962233db5346e9d86739692524p@chr10:22967066..22967069, -
2.39e-66FFCP PHASE1:Hg19::chr11:7340444..7340448,+#_7a52a960fe416eca5022ec4289192d84p@chr11:7340444..7340448, +
2.39e-66FFCP PHASE2:Hg19::chr14:95727527..95727529,-#_7a52a960fe416eca5022ec4289192d84p@chr14:95727527..95727529, -
2.39e-66FFCP PHASE1:Hg19::chr1:44956567..44956571,+#_7a52a960fe416eca5022ec4289192d84p@chr1:44956567..44956571, +
2.39e-66FFCP PHASE1:Hg19::chr14:95727527..95727529,-#_7a52a960fe416eca5022ec4289192d84p@chr14:95727527..95727529, -
2.39e-66FFCP PHASE2:Hg19::chr1:44956567..44956571,+#_7a52a960fe416eca5022ec4289192d84p@chr1:44956567..44956571, +
2.39e-66FFCP PHASE2:Hg19::chr11:7340444..7340448,+#_7a52a960fe416eca5022ec4289192d84p@chr11:7340444..7340448, +
4.66e-66FFCP PHASE2:Hg19::chr14:105166013..105166017,+#_fc6371cdfba5f3159ad2145b79dc994ap@chr14:105166013..105166017, +
4.66e-66FFCP PHASE1:Hg19::chr14:105166013..105166017,+#_fc6371cdfba5f3159ad2145b79dc994ap@chr14:105166013..105166017, +
4.66e-66FFCP PHASE2:Hg19::chr13:43872447..43872452,-#_fc6371cdfba5f3159ad2145b79dc994ap@chr13:43872447..43872452, -
4.66e-66FFCP PHASE1:Hg19::chr13:43872447..43872452,-#_fc6371cdfba5f3159ad2145b79dc994ap@chr13:43872447..43872452, -
4.66e-66FFCP PHASE2:Hg19::chr13:34922094..34922105,+#_fc6371cdfba5f3159ad2145b79dc994ap@chr13:34922094..34922105, +
4.66e-66FFCP PHASE1:Hg19::chr17:29623232..29623241,-#_fc6371cdfba5f3159ad2145b79dc994ap8@OMG
4.66e-66FFCP PHASE2:Hg19::chr17:29623232..29623241,-#_fc6371cdfba5f3159ad2145b79dc994ap8@OMG
4.66e-66FFCP PHASE1:Hg19::chr13:34922094..34922105,+#_fc6371cdfba5f3159ad2145b79dc994ap@chr13:34922094..34922105, +
4.66e-66FFCP PHASE1:Hg19::chr9:79516011..79516022,-#_fc6371cdfba5f3159ad2145b79dc994ap@chr9:79516011..79516022, -
4.66e-66FFCP PHASE2:Hg19::chr9:79516011..79516022,-#_fc6371cdfba5f3159ad2145b79dc994ap@chr9:79516011..79516022, -
1.46e-50FFCP PHASE2:Hg19::chrX:28627633..28627642,+#_45e8dabb959fa494c2c5df685a5beb60p@chrX:28627633..28627642, +
1.46e-50FFCP PHASE1:Hg19::chr9:108178201..108178203,+#_45e8dabb959fa494c2c5df685a5beb60p@chr9:108178201..108178203, +
1.46e-50FFCP PHASE1:Hg19::chrX:28627633..28627642,+#_45e8dabb959fa494c2c5df685a5beb60p@chrX:28627633..28627642, +
1.46e-50FFCP PHASE2:Hg19::chr9:108178201..108178203,+#_45e8dabb959fa494c2c5df685a5beb60p@chr9:108178201..108178203, +
3.99e-50FFCP PHASE2:Hg19::chr6:89803656..89803659,+#_16951ec517e4efbc646ddfdd16829953p@chr6:89803656..89803659, +
3.99e-50FFCP PHASE2:Hg19::chr3:50717966..50717971,+#_16951ec517e4efbc646ddfdd16829953p@chr3:50717966..50717971, +
3.99e-50FFCP PHASE1:Hg19::chr3:50717966..50717971,+#_16951ec517e4efbc646ddfdd16829953+, p@chr3:50717966..50717971
3.99e-50FFCP PHASE1:Hg19::chr20:52570026..52570037,-#_16951ec517e4efbc646ddfdd16829953p@chr20:52570026..52570037, -
3.99e-50FFCP PHASE1:Hg19::chr6:134626498..134626502,-#_16951ec517e4efbc646ddfdd16829953p@chr6:134626498..134626502, -
3.99e-50FFCP PHASE2:Hg19::chr20:52570026..52570037,-#_16951ec517e4efbc646ddfdd16829953p@chr20:52570026..52570037, -
3.99e-50FFCP PHASE1:Hg19::chr6:89803656..89803659,+#_16951ec517e4efbc646ddfdd16829953p@chr6:89803656..89803659, +
3.99e-50FFCP PHASE2:Hg19::chr6:134626498..134626502,-#_16951ec517e4efbc646ddfdd16829953p@chr6:134626498..134626502, -
6.58e-50FFCP PHASE2:Hg19::chr1:160009700..160009711,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp10@KCNJ10
6.58e-50FFCP PHASE1:Hg19::chr17:70910145..70910148,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr17:70910145..70910148, -
6.58e-50FFCP PHASE1:Hg19::chr9:137240632..137240635,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr9:137240632..137240635, +
6.58e-50FFCP PHASE1:Hg19::chr17:3479944..3479947,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr17:3479944..3479947, -
6.58e-50FFCP PHASE1:Hg19::chr1:160009700..160009711,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp10@KCNJ10
6.58e-50FFCP PHASE2:Hg19::chr9:137240632..137240635,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr9:137240632..137240635, +
6.58e-50FFCP PHASE2:Hg19::chr6:151042126..151042135,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp21@PLEKHG1
6.58e-50FFCP PHASE1:Hg19::chr6:163745521..163745530,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp2@LOC285796
6.58e-50FFCP PHASE2:Hg19::chr17:3479944..3479947,-#_c0fb0b1d9acf851f59ad0bd46ad6299d-, p@chr17:3479944..3479947
6.58e-50FFCP PHASE1:Hg19::chr9:19515907..19515918,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr9:19515907..19515918, -
6.58e-50FFCP PHASE2:Hg19::chr22:48980473..48980481,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr22:48980473..48980481, +
6.58e-50FFCP PHASE2:Hg19::chr18:26665245..26665249,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr18:26665245..26665249, +
6.58e-50FFCP PHASE2:Hg19::chr17:70910145..70910148,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr17:70910145..70910148, -
6.58e-50FFCP PHASE1:Hg19::chr6:151042126..151042135,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp21@PLEKHG1
6.58e-50FFCP PHASE1:Hg19::chr22:48980473..48980481,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr22:48980473..48980481, +
6.58e-50FFCP PHASE2:Hg19::chr1:161275096..161275109,-#_c0fb0b1d9acf851f59ad0bd46ad6299d-, p@chr1:161275096..161275109
6.58e-50FFCP PHASE2:Hg19::chr6:163745521..163745530,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp2@LOC285796
6.58e-50FFCP PHASE2:Hg19::chr9:19515907..19515918,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr9:19515907..19515918, -
6.58e-50FFCP PHASE1:Hg19::chr1:161275096..161275109,-#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr1:161275096..161275109, -
6.58e-50FFCP PHASE1:Hg19::chr18:26665245..26665249,+#_c0fb0b1d9acf851f59ad0bd46ad6299dp@chr18:26665245..26665249, +
8.97e-44FFCP PHASE2:Mm9::chr4:134073493..134073502,-#_ad3321536808d2a947ccf5a965e5c5cbp@chr4:134073493..134073502, -
8.97e-44FFCP PHASE1:Mm9::chr4:134073493..134073502,-#_ad3321536808d2a947ccf5a965e5c5cbp@chr4:134073493..134073502, -
6.62e-41FFCP PHASE1:Hg19::chr5:60933634..60933637,+#_6b5a80d92f7e3a89e83273b7af05011fp4@C5orf64
6.62e-41FFCP PHASE2:Hg19::chr4:139891920..139891924,-#_6b5a80d92f7e3a89e83273b7af05011fp@chr4:139891920..139891924, -
6.62e-41FFCP PHASE2:Hg19::chr5:60933634..60933637,+#_6b5a80d92f7e3a89e83273b7af05011fp4@C5orf64
6.62e-41FFCP PHASE1:Hg19::chr4:139891920..139891924,-#_6b5a80d92f7e3a89e83273b7af05011fp@chr4:139891920..139891924, -
9.91e-41FFCP PHASE2:Hg19::chr13:21100208..21100214,+#_22efb9dd1563a776c51217ae7fd69e64p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE1:Hg19::chr5:152017019..152017026,+#_22efb9dd1563a776c51217ae7fd69e64p@chr5:152017019..152017026, +
9.91e-41FFCP PHASE2:Hg19::chrX:13792462..13792477,-#_22efb9dd1563a776c51217ae7fd69e64p@chrX:13792462..13792477, -
9.91e-41FFCP PHASE1:Hg19::chr13:21100208..21100214,+#_22efb9dd1563a776c51217ae7fd69e64p@chr13:21100208..21100214, +
9.91e-41FFCP PHASE1:Hg19::chrX:13792462..13792477,-#_22efb9dd1563a776c51217ae7fd69e64p@chrX:13792462..13792477, -
9.91e-41FFCP PHASE2:Hg19::chr5:152017019..152017026,+#_22efb9dd1563a776c51217ae7fd69e64p@chr5:152017019..152017026, +
1.48e-40FFCP PHASE1:Hg19::chr1:109806865..109806872,+#_5c9f595808f972f41b26a4104dd8481ep10@CELSR2
1.48e-40FFCP PHASE1:Hg19::chr9:139911084..139911102,-#_5c9f595808f972f41b26a4104dd8481ep@chr9:139911084..139911102, -
1.48e-40FFCP PHASE2:Hg19::chr17:71046459..71046462,-#_5c9f595808f972f41b26a4104dd8481ep@chr17:71046459..71046462, -
1.48e-40FFCP PHASE2:Hg19::chr1:109806865..109806872,+#_5c9f595808f972f41b26a4104dd8481ep10@CELSR2
1.48e-40FFCP PHASE1:Hg19::chr2:135170207..135170218,+#_5c9f595808f972f41b26a4104dd8481ep@chr2:135170207..135170218, +
1.48e-40FFCP PHASE2:Hg19::chr2:135170207..135170218,+#_5c9f595808f972f41b26a4104dd8481ep@chr2:135170207..135170218, +
1.48e-40FFCP PHASE2:Hg19::chr1:161275238..161275250,-#_5c9f595808f972f41b26a4104dd8481ep@chr1:161275238..161275250, -
1.48e-40FFCP PHASE1:Hg19::chr1:161275238..161275250,-#_5c9f595808f972f41b26a4104dd8481ep@chr1:161275238..161275250, -
1.48e-40FFCP PHASE2:Hg19::chr9:139911084..139911102,-#_5c9f595808f972f41b26a4104dd8481e-, p@chr9:139911084..139911102
1.48e-40FFCP PHASE1:Hg19::chr17:71046459..71046462,-#_5c9f595808f972f41b26a4104dd8481ep@chr17:71046459..71046462, -
2.21e-40FFCP PHASE1:Hg19::chr9:19513297..19513309,-#_77b015ddfc114ec96c889166e40500e8p4@SLC24A2
2.21e-40FFCP PHASE2:Hg19::chr10:1246202..1246207,-#_77b015ddfc114ec96c889166e40500e8p19@ADARB2
2.21e-40FFCP PHASE1:Hg19::chr8:27522642..27522647,+#_77b015ddfc114ec96c889166e40500e8p@chr8:27522642..27522647, +
2.21e-40FFCP PHASE2:Hg19::chr10:1246245..1246252,-#_77b015ddfc114ec96c889166e40500e8p20@ADARB2
2.21e-40FFCP PHASE2:Hg19::chr9:19513297..19513309,-#_77b015ddfc114ec96c889166e40500e8p4@SLC24A2
2.21e-40FFCP PHASE1:Hg19::chr10:1246202..1246207,-#_77b015ddfc114ec96c889166e40500e8p19@ADARB2