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CL:0000222

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Name:mesodermal cell
Namespace:FANTOM
Definition:"A cell of the middle germ layer of the embryo." [MESH:A.16.254.425.660]
Xrefs:
links:
FMA:72554
Synonyms: "mesoblast" EXACT []
"mesoderm cell" EXACT []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0002321(embryonic cell)
part_of:UBERON:0000926(mesoderm)



Children


is a:CL:0002546 (embryonic blood vessel endothelial progenitor cell),FF:10696-109G3 (mesodermal tumor cell line:HIRS-BM)
develops from:CL:0000077 (mesothelial cell),CL:0000680 (muscle precursor cell),CL:0002078 (meso-epithelial cell),CL:0007010 (preosteoblast)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000222 (mesodermal cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.4e-74FFCP PHASE2:Mm9::chrX:160838683..160838694,+#_6b70e68c7f53c98c083b997637e0d0cep@chrX:160838683..160838694, +
2.4e-74FFCP PHASE1:Mm9::chrX:160838683..160838694,+#_6b70e68c7f53c98c083b997637e0d0cep@chrX:160838683..160838694, +
4.4e-68FFCP PHASE1:Mm9::chr1:127573795..127573810,+#_8210c5219a3ab74981e852ce6269ab9dp4@Gpr39
4.4e-68FFCP PHASE2:Mm9::chr1:127573795..127573810,+#_8210c5219a3ab74981e852ce6269ab9dp4@Gpr39
3.86e-64FFCP PHASE1:Mm9::chr12:105433069..105433075,-#_3a7b8c1335e3d4add4ac92fbdc5af87cp@chr12:105433069..105433075, -
3.86e-64FFCP PHASE2:Mm9::chrX:65748600..65748616,+#_3a7b8c1335e3d4add4ac92fbdc5af87cp@chrX:65748600..65748616, +
3.86e-64FFCP PHASE1:Mm9::chrX:65748600..65748616,+#_3a7b8c1335e3d4add4ac92fbdc5af87cp@chrX:65748600..65748616, +
3.86e-64FFCP PHASE2:Mm9::chr12:105433069..105433075,-#_3a7b8c1335e3d4add4ac92fbdc5af87cp@chr12:105433069..105433075, -
3.78e-62FFCP PHASE2:Mm9::chrX:160838787..160838800,+#_615878bcda576b3ed46480927f2fa356p@chrX:160838787..160838800, +
3.78e-62FFCP PHASE1:Mm9::chrX:160838787..160838800,+#_615878bcda576b3ed46480927f2fa356p@chrX:160838787..160838800, +
2.9e-57FFCP PHASE2:Hg19::chr8:55370720..55370733,+#_8197dc334f0ce1348e0666a8f611c2c0p2@SOX17
2.9e-57FFCP PHASE1:Hg19::chr8:55370720..55370733,+#_8197dc334f0ce1348e0666a8f611c2c0p2@SOX17
3.39e-56FFCP PHASE2:Mm9::chr11:81849982..81850000,+#_9dc2c890d2873585cf7bb3142edcee08p@chr11:81849982..81850000, +
3.39e-56FFCP PHASE1:Mm9::chr11:81849982..81850000,+#_9dc2c890d2873585cf7bb3142edcee08p@chr11:81849982..81850000, +
2.95e-54FFCP PHASE2:Hg19::chr12:96830430..96830450,+#_2da3bb185870eba26b8f8e31d6012040p@chr12:96830430..96830450, +
2.95e-54FFCP PHASE1:Hg19::chr12:96830430..96830450,+#_2da3bb185870eba26b8f8e31d6012040p@chr12:96830430..96830450, +
4.62e-52FFCP PHASE1:Mm9::chr17:14813242..14813246,-#_8d92a14aa1f86cf0ec89a016a088faebp@chr17:14813242..14813246, -
4.62e-52FFCP PHASE2:Mm9::chr17:14813242..14813246,-#_8d92a14aa1f86cf0ec89a016a088faebp@chr17:14813242..14813246, -
5.28e-50FFCP PHASE1:Mm9::chrX:160823859..160823870,+#_bb5b5fc242076358f7b6f5dc6266df86p@chrX:160823859..160823870, +
5.28e-50FFCP PHASE2:Mm9::chrX:160823859..160823870,+#_bb5b5fc242076358f7b6f5dc6266df86p@chrX:160823859..160823870, +
5.28e-50FFCP PHASE1:Mm9::chrX:160840025..160840037,+#_bb5b5fc242076358f7b6f5dc6266df86p@chrX:160840025..160840037, +
5.28e-50FFCP PHASE2:Mm9::chrX:160840025..160840037,+#_bb5b5fc242076358f7b6f5dc6266df86p@chrX:160840025..160840037, +
5.28e-50FFCP PHASE2:Mm9::chrX:160840048..160840057,+#_bb5b5fc242076358f7b6f5dc6266df86p@chrX:160840048..160840057, +
5.28e-50FFCP PHASE1:Mm9::chrX:160840048..160840057,+#_bb5b5fc242076358f7b6f5dc6266df86p@chrX:160840048..160840057, +
2.18e-47FFCP PHASE2:Hg19::chr1:21606171..21606188,-#_1d958ff00dd227690f8c76dec4afa88dp10@ECE1
2.18e-47FFCP PHASE1:Hg19::chr1:21606171..21606188,-#_1d958ff00dd227690f8c76dec4afa88dp10@ECE1
8.93e-47FFCP PHASE1:Hg19::chr5:54281512..54281517,-#_8258e48c9680e6598c21b46c75e2bb02p4@ESM1
8.93e-47FFCP PHASE2:Hg19::chr5:54281512..54281517,-#_8258e48c9680e6598c21b46c75e2bb02p4@ESM1
1.81e-45FFCP PHASE1:Hg19::chr5:54281535..54281547,-#_d7911c7579fe93655fc1e128fe88ac5bp2@ESM1
1.81e-45FFCP PHASE2:Hg19::chr5:54281535..54281547,-#_d7911c7579fe93655fc1e128fe88ac5bp2@ESM1
3.22e-45FFCP PHASE2:Mm9::chr3:79689074..79689090,+#_0ac3ae82a0a1b09ad9bd06f22219f33bp11@Fam198b
3.22e-45FFCP PHASE1:Mm9::chr3:79689074..79689090,+#_0ac3ae82a0a1b09ad9bd06f22219f33bp11@Fam198b
4.95e-45FFCP PHASE2:Mm9::chr1:127574253..127574264,+#_329f7ed949643505b8bbabfa885f5834p@chr1:127574253..127574264, +
4.95e-45FFCP PHASE1:Mm9::chr1:127574253..127574264,+#_329f7ed949643505b8bbabfa885f5834p@chr1:127574253..127574264, +
7.5e-45FFCP PHASE2:Mm9::chr1:127573733..127573745,+#_e82d4f82a36a09a3f7a9201e007c32c1p7@Gpr39
7.5e-45FFCP PHASE1:Mm9::chr1:127573733..127573745,+#_e82d4f82a36a09a3f7a9201e007c32c1p7@Gpr39
9.22e-45FFCP PHASE1:Mm9::chr1:127573690..127573699,+#_8ed286593bcead8510ac331486fc916ap11@Gpr39
9.22e-45FFCP PHASE2:Mm9::chr1:127573690..127573699,+#_8ed286593bcead8510ac331486fc916ap11@Gpr39
1.13e-44FFCP PHASE1:Mm9::chrX:160839768..160839780,+#_c3c450f114c829bf93b021ed92ea3625p@chrX:160839768..160839780, +
1.13e-44FFCP PHASE2:Mm9::chrX:160839768..160839780,+#_c3c450f114c829bf93b021ed92ea3625p@chrX:160839768..160839780, +
1.13e-44FFCP PHASE1:Mm9::chr17:78775126..78775139,+#_c3c450f114c829bf93b021ed92ea3625p@chr17:78775126..78775139, +
1.13e-44FFCP PHASE2:Mm9::chr17:78775126..78775139,+#_c3c450f114c829bf93b021ed92ea3625+, p@chr17:78775126..78775139
2.59e-44FFCP PHASE1:Mm9::chr1:127573462..127573472,+#_0cf2b2bb4fd48ff1db5e04ddeb138bf4p8@Gpr39
2.59e-44FFCP PHASE2:Mm9::chr1:127573462..127573472,+#_0cf2b2bb4fd48ff1db5e04ddeb138bf4p8@Gpr39
2.04e-43FFCP PHASE2:Hg19::chr11:128563283..128563297,-#_6c47c0ca7a946bb02ff2e6f3d4d0c77ep@chr11:128563283..128563297, -
2.04e-43FFCP PHASE1:Hg19::chr11:128563283..128563297,-#_6c47c0ca7a946bb02ff2e6f3d4d0c77ep@chr11:128563283..128563297, -
7.92e-43FFCP PHASE1:Hg19::chr7:100773764..100773799,-#_49eead8e0d2f6bb0c502dd7a4d994069p@chr7:100773764..100773799, -
7.92e-43FFCP PHASE2:Hg19::chr7:100773764..100773799,-#_49eead8e0d2f6bb0c502dd7a4d994069p@chr7:100773764..100773799, -
1.11e-42FFCP PHASE1:Hg19::chr1:186946626..186946652,+#_dd13dd1947ea9f23dd112dae5e949cc1p@chr1:186946626..186946652, +
1.11e-42FFCP PHASE2:Hg19::chr1:186946626..186946652,+#_dd13dd1947ea9f23dd112dae5e949cc1p@chr1:186946626..186946652, +
9.39e-42FFCP PHASE1:Hg19::chr16:86964992..86965035,-#_6f4624d56e97661d553a2eed6016063fp@chr16:86964992..86965035, -
9.39e-42FFCP PHASE2:Hg19::chr16:86964992..86965035,-#_6f4624d56e97661d553a2eed6016063fp@chr16:86964992..86965035, -
2.02e-41FFCP PHASE2:Hg19::chr11:128562673..128562716,-#_465004f67cde9651607aebb114b49ea1p@chr11:128562673..128562716, -
2.02e-41FFCP PHASE1:Hg19::chr11:128562673..128562716,-#_465004f67cde9651607aebb114b49ea1p@chr11:128562673..128562716, -
2.72e-41FFCP PHASE1:Mm9::chr7:96658543..96658553,-#_aee8d44ea5b076212862fae1df2a556ap@chr7:96658543..96658553, -
2.72e-41FFCP PHASE2:Mm9::chr7:96658543..96658553,-#_aee8d44ea5b076212862fae1df2a556ap@chr7:96658543..96658553, -
6.57e-41FFCP PHASE2:Hg19::chr4:10118075..10118107,-#_5ce5f2792b49035d8e3a397baf7517c7p5@WDR1
6.57e-41FFCP PHASE1:Hg19::chr4:10118075..10118107,-#_5ce5f2792b49035d8e3a397baf7517c7p5@WDR1
7.74e-41FFCP PHASE2:Hg19::chr12:105863654..105863682,+#_6c1bb820c688c19c1902e14b928cfa74+, p@chr12:105863654..105863682
7.74e-41FFCP PHASE1:Hg19::chr12:105863654..105863682,+#_6c1bb820c688c19c1902e14b928cfa74p@chr12:105863654..105863682, +
1.39e-40FFCP PHASE1:Hg19::chr4:10118034..10118074,-#_39a7e63161b40fc60610345f8e01f433p6@WDR1
1.39e-40FFCP PHASE2:Hg19::chr4:10118034..10118074,-#_39a7e63161b40fc60610345f8e01f433p6@WDR1
1.9e-40FFCP PHASE2:Hg19::chr7:100770466..100770499,+#_1501181ec66c5c929157487e96617588p2@SERPINE1
1.9e-40FFCP PHASE1:Hg19::chr7:100770466..100770499,+#_1501181ec66c5c929157487e96617588p2@SERPINE1
1.96e-40FFCP PHASE2:Hg19::chr7:100775170..100775232,+#_34d2b206a34afa4a6292f6fa83fef6a6p2@BX649164
1.96e-40FFCP PHASE1:Hg19::chr7:100775170..100775232,+#_34d2b206a34afa4a6292f6fa83fef6a6p2@BX649164
2.31e-40FFCP PHASE1:Mm9::chr5:30339923..30339935,+#_ce5728614acc07870d8df26ec7293c13p2@Il6
2.31e-40FFCP PHASE2:Mm9::chr13:113253807..113253846,+#_ce5728614acc07870d8df26ec7293c13p4@Il6st
2.31e-40FFCP PHASE2:Mm9::chr5:30339923..30339935,+#_ce5728614acc07870d8df26ec7293c13p2@Il6
2.31e-40FFCP PHASE2:Mm9::chr7:91081998..91082010,-#_ce5728614acc07870d8df26ec7293c13p@chr7:91081998..91082010, -
2.31e-40FFCP PHASE1:Mm9::chr7:91081998..91082010,-#_ce5728614acc07870d8df26ec7293c13p@chr7:91081998..91082010, -
2.31e-40FFCP PHASE1:Mm9::chr13:113253807..113253846,+#_ce5728614acc07870d8df26ec7293c13p4@Il6st
2.82e-40FFCP PHASE1:Hg19::chr6:3753188..3753192,-#_1d4f5d416d376d8874a349037b271c3cp@chr6:3753188..3753192, -
2.82e-40FFCP PHASE2:Hg19::chr6:3753188..3753192,-#_1d4f5d416d376d8874a349037b271c3cp@chr6:3753188..3753192, -
2.91e-40FFCP PHASE2:Mm9::chr10:67598037..67598049,-#_5a6384637082e6273aa43d21c10a0bcbp@chr10:67598037..67598049, -
2.91e-40FFCP PHASE1:Mm9::chr10:67598037..67598049,-#_5a6384637082e6273aa43d21c10a0bcbp@chr10:67598037..67598049, -
3.14e-40FFCP PHASE1:Hg19::chr12:105863636..105863650,+#_911028847c6f530d0495c942042d6a9cp@chr12:105863636..105863650, +
3.14e-40FFCP PHASE2:Hg19::chr12:105863636..105863650,+#_911028847c6f530d0495c942042d6a9cp@chr12:105863636..105863650, +
3.31e-40FFCP PHASE2:Hg19::chr16:128274..128286,+#_09858eb543323379947edbf75c55957dp2@MPG
3.31e-40FFCP PHASE1:Hg19::chr16:128274..128286,+#_09858eb543323379947edbf75c55957dp2@MPG
3.41e-40FFCP PHASE2:Mm9::chr18:52678391..52678395,-#_1594f3cee123ba60655cbee2ce441e5ap@chr18:52678391..52678395, -
3.41e-40FFCP PHASE1:Mm9::chr18:52678391..52678395,-#_1594f3cee123ba60655cbee2ce441e5ap@chr18:52678391..52678395, -
5.82e-40FFCP PHASE1:Mm9::chr2:65009852..65009866,-#_ab65ba67fcca45bb285cfc09935b1619p@chr2:65009852..65009866, -
5.82e-40FFCP PHASE2:Mm9::chr2:65009852..65009866,-#_ab65ba67fcca45bb285cfc09935b1619p@chr2:65009852..65009866, -
6.01e-40FFCP PHASE2:Mm9::chr15:6824301..6824306,-#_719889ee111a9c8206189462d7f52f35p5@Osmr
6.01e-40FFCP PHASE1:Mm9::chr15:6824301..6824306,-#_719889ee111a9c8206189462d7f52f35p5@Osmr
9.26e-40FFCP PHASE2:Hg19::chr7:100781252..100781342,+#_cbcdee23ff21410058742f108721edecp@chr7:100781252..100781342, +
9.26e-40FFCP PHASE1:Hg19::chr7:100781252..100781342,+#_cbcdee23ff21410058742f108721edecp@chr7:100781252..100781342, +
9.58e-40FFCP PHASE2:Hg19::chr7:100770437..100770464,+#_e4d7873c2a9e86e3fd4ba633138dbc65p3@SERPINE1
9.58e-40FFCP PHASE1:Hg19::chr7:100770437..100770464,+#_e4d7873c2a9e86e3fd4ba633138dbc65p3@SERPINE1
1.01e-39FFCP PHASE1:Hg19::chr7:100773698..100773743,+#_0f4dbfc4bf021fafc33a67592702ba6bp@chr7:100773698..100773743, +
1.01e-39FFCP PHASE2:Hg19::chr7:100773698..100773743,+#_0f4dbfc4bf021fafc33a67592702ba6bp@chr7:100773698..100773743, +
1.38e-39FFCP PHASE2:Hg19::chr5:150019857..150019868,+#_872328b560b2cc63ba89df380ad48037p18@SYNPO
1.38e-39FFCP PHASE1:Hg19::chr5:150019857..150019868,+#_872328b560b2cc63ba89df380ad48037p18@SYNPO
1.61e-39FFCP PHASE2:Mm9::chr6:91222095..91222107,+#_e313023d1abbfdcf3f6e6b1473afbf85p@chr6:91222095..91222107, +
1.61e-39FFCP PHASE1:Mm9::chr6:91222095..91222107,+#_e313023d1abbfdcf3f6e6b1473afbf85p@chr6:91222095..91222107, +
2.32e-39FFCP PHASE2:Mm9::chr5:114822634..114822665,-#_fb940b6a968e8a986970ff7e50f2baf6p9@Kctd10
2.32e-39FFCP PHASE1:Mm9::chr5:114822634..114822665,-#_fb940b6a968e8a986970ff7e50f2baf6p9@Kctd10
2.78e-39FFCP PHASE1:Mm9::chr1:127573773..127573786,+#_0a81bbb24097df97838cc1e3e0a015ccp6@Gpr39
2.78e-39FFCP PHASE2:Mm9::chr1:127573773..127573786,+#_0a81bbb24097df97838cc1e3e0a015ccp6@Gpr39