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UBERON:0000926

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Name:mesoderm
Namespace:FANTOM
Definition:"The middle germ layer of the embryo, between the endoderm and ectoderm." [Wikipedia:Mesoderm]
Xrefs:
links:

AAO:0000304
BILA:0000037
BTO:0000839
EFO:0001981
EHDAA2:0001128
EHDAA:124
EHDAA:160
EHDAA:168
EHDAA:183
EMAPA:16083
EV:0100006
FBbt:00000126
FMA:69072
GAID:522
[ Mesoderm.png Mesoderm.png]
[ 200px-Mesoderm.png 200px-Mesoderm.png]
MAT:0000174
MESH:A.16.254.425.660
MIAA:0000174
ncithesaurus:Mesoderm
SCTID:362854004
TAO:0000041
VHOG:0000152
XAO:0000050

ZFA:0000041
Synonyms: "entire mesoderm" RELATED [SCTID:362854004, UBERON:cjm]
"mesodermal mantle" RELATED []
Comments:Taxon notes: sponges do not seem to have a mesoderm and accordingly Amphimedon lacks transcription factors involved in mesoderm development (Fkh, Gsc, Twist, Snail)[1]. Mesoderm may not be homologous across verteberates[UBERONREF:0000002]
Alt_id: UBERON:0003263
UBERON:FBbt_00000126-FMA_69072-MIAA_0000174-XAO_0000050-ZFA_0000041
Subset: uberon_slim
vertebrate_core

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000923(germ layer)
develops_from:UBERON:0006603(presumptive mesoderm)



Children

is a:UBERON:0005721 (pronephric mesoderm)
derives from:FF:0200026 (mouse mesoderm, embryonic day 8.5 sample)
develops from:UBERON:0000042 (serous membrane),UBERON:0000077 (mixed endoderm/mesoderm-derived structure),UBERON:0000078 (mixed ectoderm/mesoderm/endoderm-derived structure),UBERON:0000990 (reproductive system),UBERON:0001136 (mesothelium),UBERON:0001235 (adrenal cortex),UBERON:0001986 (endothelium),UBERON:0002072 (hypodermis),UBERON:0002358 (peritoneum),UBERON:0002385 (muscle tissue),UBERON:0003064 (intermediate mesoderm),UBERON:0003068 (axial mesoderm),UBERON:0003081 (lateral plate mesoderm),UBERON:0004120 (mesoderm-derived structure),UBERON:0006904 (head mesenchyme from mesoderm),UBERON:0009617 (head paraxial mesoderm),UBERON:0009618 (trunk paraxial mesoderm),UBERON:0012275 (meso-epithelium)
part of:CL:0000222 (mesodermal cell),UBERON:0003064 (intermediate mesoderm),UBERON:0003068 (axial mesoderm),UBERON:0003077 (paraxial mesoderm),UBERON:0003081 (lateral plate mesoderm),UBERON:0003082 (myotome),UBERON:0004016 (dermatome),UBERON:0004290 (dermomyotome),UBERON:0007285 (presumptive paraxial mesoderm)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000926 (mesoderm), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
6.38e-40FFCP PHASE1:Hg19::chrX:153637534..153637567,-#_ef840cec790a7a3714ebf8810e09dd8ap1@DNASE1L1
6.38e-40FFCP PHASE2:Hg19::chrX:153637534..153637567,-#_ef840cec790a7a3714ebf8810e09dd8ap1@DNASE1L1
6.15e-39FFCP PHASE2:Hg19::chr1:228270784..228270847,+#_6c13f00b64ddc6c31fe4632305b109f9p2@ARF1
6.15e-39FFCP PHASE1:Hg19::chr1:228270784..228270847,+#_6c13f00b64ddc6c31fe4632305b109f9p2@ARF1
9.61e-38FFCP PHASE1:Hg19::chr12:54812992..54813035,-#_220a11004d78d2fc2c33d36af42b9a61p1@ITGA5
9.61e-38FFCP PHASE2:Hg19::chr12:54812992..54813035,-#_220a11004d78d2fc2c33d36af42b9a61p1@ITGA5
1.56e-36FFCP PHASE1:Hg19::chr7:143078379..143078454,+#_bc25188a6e6b60c0373d19a0103a2306p1@ZYX
1.56e-36FFCP PHASE2:Hg19::chr7:143078379..143078454,+#_bc25188a6e6b60c0373d19a0103a2306p1@ZYX
2.82e-36FFCP PHASE2:Hg19::chr4:103747936..103747993,-#_102549c8bf1fa933fd4ba975dffeca4cp6@UBE2D3
2.82e-36FFCP PHASE1:Hg19::chr4:103747936..103747993,-#_102549c8bf1fa933fd4ba975dffeca4cp6@UBE2D3
5.32e-36FFCP PHASE1:Hg19::chr15:90358115..90358195,-#_f3b10efc769a32e8d79b1784ca462011p3@ANPEP
5.32e-36FFCP PHASE2:Hg19::chr15:90358115..90358195,-#_f3b10efc769a32e8d79b1784ca462011p3@ANPEP
8.45e-36FFCP PHASE2:Hg19::chr5:180229791..180229829,-#_d7f248739dcba6ec1f4cad2b2606733bp1@MGAT1
8.45e-36FFCP PHASE1:Hg19::chr5:180229791..180229829,-#_d7f248739dcba6ec1f4cad2b2606733bp1@MGAT1
1.6e-35FFCP PHASE1:Hg19::chr11:504446..504486,-#_fdbc7c00e226a25c64a28dad997cb2cap4@RNH1
1.6e-35FFCP PHASE2:Hg19::chr11:504446..504486,-#_fdbc7c00e226a25c64a28dad997cb2cap4@RNH1
2.85e-35FFCP PHASE2:Hg19::chr19:44174330..44174355,-#_9ef84cbd9b0d0b16223a42f380498b7ep2@PLAUR
2.85e-35FFCP PHASE1:Hg19::chr19:44174330..44174355,-#_9ef84cbd9b0d0b16223a42f380498b7ep2@PLAUR
3.37e-35FFCP PHASE1:Hg19::chr1:21616690..21616719,-#_902e9d06d5508c464ae4ec9549320d84p4@ECE1
3.37e-35FFCP PHASE2:Hg19::chr1:21616690..21616719,-#_902e9d06d5508c464ae4ec9549320d84p4@ECE1
5.03e-35FFCP PHASE2:Hg19::chr7:143079458..143079487,+#_2352b848aae5ed0261fe54b912196d14p4@ZYX
5.03e-35FFCP PHASE1:Hg19::chr7:143079458..143079487,+#_2352b848aae5ed0261fe54b912196d14p4@ZYX
1.17e-34FFCP PHASE2:Hg19::chr4:15704679..15704733,+#_705cd95c97795ba13103f06d938f84b3p1@BST1
1.17e-34FFCP PHASE1:Hg19::chr4:15704679..15704733,+#_705cd95c97795ba13103f06d938f84b3p1@BST1
1.75e-34FFCP PHASE1:Hg19::chrX:153637522..153637533,-#_5848209969245f1b446438bb574fd3e5p4@DNASE1L1
1.75e-34FFCP PHASE2:Hg19::chrX:153637522..153637533,-#_5848209969245f1b446438bb574fd3e5p4@DNASE1L1
1.89e-34FFCP PHASE2:Hg19::chr19:50015870..50015934,+#_3bfa8521e47c0bfacc3109b78f3114bbp2@FCGRT
1.89e-34FFCP PHASE1:Hg19::chr19:50015870..50015934,+#_3bfa8521e47c0bfacc3109b78f3114bbp2@FCGRT
2.1e-34FFCP PHASE1:Hg19::chr12:54813229..54813273,-#_e08a5b61753d71f83631ed75e2cbda8cp3@ITGA5
2.1e-34FFCP PHASE2:Hg19::chr12:54813229..54813273,-#_e08a5b61753d71f83631ed75e2cbda8cp3@ITGA5
4.33e-34FFCP PHASE2:Hg19::chr19:44174310..44174329,-#_fa5b0ab59b853e16f8cb8adbca538512p1@PLAUR
4.33e-34FFCP PHASE1:Hg19::chr19:44174310..44174329,-#_fa5b0ab59b853e16f8cb8adbca538512p1@PLAUR
7.52e-34FFCP PHASE1:Hg19::chr1:221052776..221052799,+#_a1446ba40352037a24d48cc7f7ef9d91p1@HLX
7.52e-34FFCP PHASE2:Hg19::chr1:221052776..221052799,+#_a1446ba40352037a24d48cc7f7ef9d91p1@HLX
8.49e-34FFCP PHASE2:Hg19::chr4:159093517..159093533,-#_8c85a728f89a11fd03bba24f3341e4cfp1@FAM198B
8.49e-34FFCP PHASE1:Hg19::chr4:159093517..159093533,-#_8c85a728f89a11fd03bba24f3341e4cfp1@FAM198B
3.78e-33FFCP PHASE1:Hg19::chr15:90358048..90358103,-#_0511f154ba60356ec188990130384b07p1@ANPEP
3.78e-33FFCP PHASE2:Hg19::chr15:90358048..90358103,-#_0511f154ba60356ec188990130384b07p1@ANPEP
3.32e-32FFCP PHASE1:Hg19::chr7:97911007..97911027,+#_26435938e3239e70d376d510cef8423ap3@BRI3
3.32e-32FFCP PHASE2:Hg19::chr7:97911007..97911027,+#_26435938e3239e70d376d510cef8423ap3@BRI3
5.72e-32FFCP PHASE2:Hg19::chr7:97910981..97911006,+#_100faa4865664d5161f520a0008f41e6p1@BRI3
5.72e-32FFCP PHASE1:Hg19::chr7:97910981..97911006,+#_100faa4865664d5161f520a0008f41e6p1@BRI3
5.73e-32FFCP PHASE2:Hg19::chr19:54371114..54371180,+#_d61cfb42500136991ccc245a081f2934p1@MYADM
5.73e-32FFCP PHASE1:Hg19::chr19:54371114..54371180,+#_d61cfb42500136991ccc245a081f2934p1@MYADM
7.25e-32FFCP PHASE1:Hg19::chr4:103747996..103748022,-#_90041e8a0ad2a882952d5083ea20fc85p4@UBE2D3
7.25e-32FFCP PHASE2:Hg19::chr4:103747996..103748022,-#_90041e8a0ad2a882952d5083ea20fc85p4@UBE2D3
7.82e-32FFCP PHASE1:Hg19::chr19:50015936..50015981,+#_cd91040758a5d2574d519cedd378f5e2p3@FCGRT
7.82e-32FFCP PHASE2:Hg19::chr19:50015936..50015981,+#_cd91040758a5d2574d519cedd378f5e2p3@FCGRT
8.33e-32FFCP PHASE2:Hg19::chr8:134584101..134584143,-#_fab013e5644acfadca752ea3bd0b898cp2@ST3GAL1
8.33e-32FFCP PHASE1:Hg19::chr8:134584101..134584143,-#_fab013e5644acfadca752ea3bd0b898cp2@ST3GAL1
1.49e-31FFCP PHASE1:Hg19::chr7:143078652..143078754,+#_80f55d84fa4d989503b80ebdc41c0e34p2@ZYX
1.49e-31FFCP PHASE2:Hg19::chr7:143078652..143078754,+#_80f55d84fa4d989503b80ebdc41c0e34p2@ZYX
2.42e-31FFCP PHASE2:Hg19::chr1:17944856..17944906,+#_d7151b05a4f1b1319895e485cabb2488p3@ARHGEF10L
2.42e-31FFCP PHASE1:Hg19::chr1:17944856..17944906,+#_d7151b05a4f1b1319895e485cabb2488p3@ARHGEF10L
2.88e-31FFCP PHASE1:Hg19::chr12:65153154..65153171,-#_6039359dceb2a7b1f40413f4ecdd75a2p2@GNS
2.88e-31FFCP PHASE2:Hg19::chr12:65153154..65153171,-#_6039359dceb2a7b1f40413f4ecdd75a2p2@GNS
8.04e-31FFCP PHASE1:Hg19::chr1:221053049..221053075,+#_ff7735fc58cd4e6d179c18ea5b02a783p3@HLX
8.04e-31FFCP PHASE2:Hg19::chr1:221053049..221053075,+#_ff7735fc58cd4e6d179c18ea5b02a783p3@HLX
8.77e-31FFCP PHASE2:Hg19::chr1:87170448..87170539,+#_6d84a4359abfd89df11fcd7bdb822c12p1@SH3GLB1
8.77e-31FFCP PHASE1:Hg19::chr1:87170448..87170539,+#_6d84a4359abfd89df11fcd7bdb822c12p1@SH3GLB1
9.41e-31FFCP PHASE1:Hg19::chr10:104403641..104403699,+#_f23d32b302a4971dcdd71b7d02eb07d5p@chr10:104403641..104403699, +
9.41e-31FFCP PHASE2:Hg19::chr10:104403641..104403699,+#_f23d32b302a4971dcdd71b7d02eb07d5p@chr10:104403641..104403699, +
9.71e-31FFCP PHASE2:Hg19::chr4:80994210..80994284,-#_c2af42866f36622f2a099a2888441e60p2@ANTXR2
9.71e-31FFCP PHASE1:Hg19::chr4:80994210..80994284,-#_c2af42866f36622f2a099a2888441e60p2@ANTXR2
9.83e-31FFCP PHASE1:Hg19::chr4:122618095..122618161,-#_016568157f0bdad1fa07b37c8b31fb49p1@ANXA5
9.83e-31FFCP PHASE2:Hg19::chr4:122618095..122618161,-#_016568157f0bdad1fa07b37c8b31fb49p1@ANXA5
1.49e-30FFCP PHASE1:Hg19::chr9:130616952..130616973,-#_b7a543cd39b1db02aaf4b5fd1c35f5b5p3@ENG
1.49e-30FFCP PHASE2:Hg19::chr9:130616952..130616973,-#_b7a543cd39b1db02aaf4b5fd1c35f5b5p3@ENG
1.87e-30FFCP PHASE2:Hg19::chr1:20987936..20987969,-#_e35b513ee7cd2296a23b3aa521c3fb62p2@DDOST
1.87e-30FFCP PHASE1:Hg19::chr1:20987936..20987969,-#_e35b513ee7cd2296a23b3aa521c3fb62p2@DDOST
3.28e-30FFCP PHASE1:Hg19::chrX:46433193..46433237,+#_3864dfe743d7e7088fe5ea47c54c2b66p1@CHST7
3.28e-30FFCP PHASE2:Hg19::chrX:46433193..46433237,+#_3864dfe743d7e7088fe5ea47c54c2b66p1@CHST7
3.51e-30FFCP PHASE1:Hg19::chr17:81037473..81037498,+#_ec3e97853942bad3cced97866597fb57p1@METRNL
3.51e-30FFCP PHASE2:Hg19::chr17:81037473..81037498,+#_ec3e97853942bad3cced97866597fb57p1@METRNL
3.8e-30FFCP PHASE2:Hg19::chr6:146864960..146864999,+#_b453996d2df6bbb53234ed380bd561bbp1@RAB32
3.8e-30FFCP PHASE1:Hg19::chr6:146864960..146864999,+#_b453996d2df6bbb53234ed380bd561bbp1@RAB32
5.98e-30FFCP PHASE1:Hg19::chr3:50273625..50273655,+#_8e06489cf03982f4df517860e79d8c00p1@GNAI2
5.98e-30FFCP PHASE2:Hg19::chr3:50273625..50273655,+#_8e06489cf03982f4df517860e79d8c00p1@GNAI2
6.52e-30FFCP PHASE1:Hg19::chr7:143077956..143078096,-#_963879b71e8c7e9cb80b02b9999713e3p1@ENST00000429630
6.52e-30FFCP PHASE2:Hg19::chr7:143077956..143078096,-#_963879b71e8c7e9cb80b02b9999713e3p1@ENST00000429630
7.62e-30FFCP PHASE2:Hg19::chr9:35732119..35732199,-#_972538a1a3f36d9b23cae1dfce250b06p1@TLN1
7.62e-30FFCP PHASE1:Hg19::chr9:35732119..35732199,-#_972538a1a3f36d9b23cae1dfce250b06p1@TLN1
9.35e-30FFCP PHASE2:Hg19::chr5:114938090..114938226,-#_4aabd60a6a325b6f9d59e5e8f1120629p1@TICAM2, p2@TMED7-TICAM2
9.35e-30FFCP PHASE1:Hg19::chr5:114938090..114938226,-#_4aabd60a6a325b6f9d59e5e8f1120629p1@TICAM2, p2@TMED7-TICAM2
1.51e-29FFCP PHASE1:Hg19::chr1:59762730..59762773,+#_cd8c85a2db32daafd75499928599070fp1@FGGY
1.51e-29FFCP PHASE2:Hg19::chr1:59762730..59762773,+#_cd8c85a2db32daafd75499928599070fp1@FGGY
1.57e-29FFCP PHASE2:Hg19::chr11:67120956..67120972,-#_6b4ce1c12cd94cdbe93f18c7a3ef0f4dp2@POLD4
1.57e-29FFCP PHASE1:Hg19::chr11:67120956..67120972,-#_6b4ce1c12cd94cdbe93f18c7a3ef0f4dp2@POLD4
1.96e-29FFCP PHASE1:Hg19::chr11:504867..504925,-#_a7db9716dd0988b362c9702063a72b24p3@RNH1
1.96e-29FFCP PHASE2:Hg19::chr11:504867..504925,-#_a7db9716dd0988b362c9702063a72b24p3@RNH1
3.49e-29FFCP PHASE2:Hg19::chr4:159092525..159092574,-#_2ce8cf32429c5fc912b829bfe47ec407p4@FAM198B
3.49e-29FFCP PHASE1:Hg19::chr4:159092525..159092574,-#_2ce8cf32429c5fc912b829bfe47ec407p4@FAM198B
5.21e-29FFCP PHASE1:Hg19::chr3:148709310..148709337,+#_f08f810aec085ad6fe464433a8630549p1@GYG1
5.21e-29FFCP PHASE2:Hg19::chr3:148709310..148709337,+#_f08f810aec085ad6fe464433a8630549p1@GYG1
6.23e-29FFCP PHASE1:Hg19::chr8:146078927..146078951,-#_91cf648a38ab4db34710588de59827ccp4@COMMD5
6.23e-29FFCP PHASE2:Hg19::chr8:146078927..146078951,-#_91cf648a38ab4db34710588de59827ccp4@COMMD5
7.59e-29FFCP PHASE2:Hg19::chr4:10118348..10118395,-#_37e2a6f50ca407a63a9601f89740b2a5p1@WDR1
7.59e-29FFCP PHASE1:Hg19::chr4:10118348..10118395,-#_37e2a6f50ca407a63a9601f89740b2a5p1@WDR1
8.57e-29FFCP PHASE1:Hg19::chr12:53694132..53694153,-#_a18b8dec27dce98f5093bf2092377fd8p1@ENST00000550263
8.57e-29FFCP PHASE2:Hg19::chr12:53694132..53694153,-#_a18b8dec27dce98f5093bf2092377fd8p1@ENST00000550263










Property "Property value" (as page type) with input value "UBPROP:0000001 "Primary germ layer that is the middle of the embryonic germ layers.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.