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CL:0000451

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Name:dendritic cell
Namespace:FANTOM
Definition:"A cell of hematopoietic origin, typically resident in particular tissues, specialized in the uptake, processing, and transport of antigens to lymph nodes for the purpose of stimulating an immune response via T cell activation. These cells are lineage negative (CD3-negative, CD19-negative, CD34-negative, and CD56-negative)." [GOC:add, ISBN:0781735149]
Xrefs:
links:

BTO:0002042

FMA:83036
Synonyms: "interdigitating cell" RELATED []
"veiled cell" RELATED []


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0000738(leukocyte)
disjoint_from:CL:0000542(lymphocyte)



Children


is a:CL:0000784 (plasmacytoid dendritic cell),CL:0000990 (conventional dendritic cell)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

  • 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
  • 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
  • 11227-116C3 (Dendritic Cells - monocyte immature derived, donor1)
  • 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
  • 11308-117C3 (Dendritic Cells - monocyte immature derived, donor2)
  • 11309-117C4 (Dendritic Cells - plasmacytoid, donor2)
  • 11384-118B7 (Dendritic Cells - monocyte immature derived, donor3)
  • 11385-118B8 (Dendritic Cells - plasmacytoid, donor3)
  • 11901-125F2 (migratory langerhans cells, donor1)
  • 11902-125F3 (migratory langerhans cells, donor2)

... further results Mouse (Mus musculus)

  • 10457-106G7 (squamous cell lung carcinoma cell line:LC-1F)
  • 10501-107C6 (squamous cell lung carcinoma cell line:RERF-LC-AI)
  • 11227-116C3 (Dendritic Cells - monocyte immature derived, donor1)
  • 11228-116C4 (Dendritic Cells - plasmacytoid, donor1)
  • 11308-117C3 (Dendritic Cells - monocyte immature derived, donor2)
  • 11309-117C4 (Dendritic Cells - plasmacytoid, donor2)
  • 11384-118B7 (Dendritic Cells - monocyte immature derived, donor3)
  • 11385-118B8 (Dendritic Cells - plasmacytoid, donor3)
  • 11901-125F2 (migratory langerhans cells, donor1)
  • 11902-125F3 (migratory langerhans cells, donor2)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000451 (dendritic cell), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
3.02e-142FFCP PHASE2:Hg19::chr15:101535004..101535045,+#_f4f460869cff33a633fadb55c7eb825fp@chr15:101535004..101535045, +
3.02e-142FFCP PHASE1:Hg19::chr15:101535004..101535045,+#_f4f460869cff33a633fadb55c7eb825fp@chr15:101535004..101535045, +
2.01e-127FFCP PHASE1:Hg19::chr6:341221..341236,-#_721bd7fb604e32170b22ad4c210410b2p@chr6:341221..341236, -
2.01e-127FFCP PHASE2:Hg19::chr6:341221..341236,-#_721bd7fb604e32170b22ad4c210410b2p@chr6:341221..341236, -
1.31e-124FFCP PHASE2:Hg19::chr17:1674976..1674981,+#_6c88667ba4f66defc0c656291de3b905p@chr17:1674976..1674981, +
1.31e-124FFCP PHASE1:Hg19::chr17:1674976..1674981,+#_6c88667ba4f66defc0c656291de3b905p@chr17:1674976..1674981, +
1.31e-124FFCP PHASE2:Hg19::chr15:101534994..101535003,+#_6c88667ba4f66defc0c656291de3b905p@chr15:101534994..101535003, +
1.31e-124FFCP PHASE1:Hg19::chr15:101534994..101535003,+#_6c88667ba4f66defc0c656291de3b905p@chr15:101534994..101535003, +
1.31e-124FFCP PHASE2:Hg19::chr16:57398251..57398254,+#_6c88667ba4f66defc0c656291de3b905p@chr16:57398251..57398254, +
1.31e-124FFCP PHASE1:Hg19::chr16:57398251..57398254,+#_6c88667ba4f66defc0c656291de3b905p@chr16:57398251..57398254, +
3.99e-114FFCP PHASE2:Hg19::chr13:75884283..75884317,-#_25f14e62665ff337b4815dc746a10587p@chr13:75884283..75884317, -
3.99e-114FFCP PHASE1:Hg19::chr13:75884283..75884317,-#_25f14e62665ff337b4815dc746a10587p@chr13:75884283..75884317, -
2.67e-109FFCP PHASE1:Hg19::chr15:101529373..101529387,+#_a56f1ed79591d3fbff65e955df9f46f5p@chr15:101529373..101529387, +
2.67e-109FFCP PHASE2:Hg19::chr16:10960104..10960115,+#_a56f1ed79591d3fbff65e955df9f46f5p4@AB463580
2.67e-109FFCP PHASE1:Hg19::chr16:10960104..10960115,+#_a56f1ed79591d3fbff65e955df9f46f5p4@AB463580
2.67e-109FFCP PHASE2:Hg19::chr15:101529373..101529387,+#_a56f1ed79591d3fbff65e955df9f46f5p@chr15:101529373..101529387, +
5.22e-107FFCP PHASE2:Hg19::chr18:59991691..59991708,+#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr18:59991691..59991708, +
5.22e-107FFCP PHASE1:Hg19::chr2:61080954..61080964,+#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr2:61080954..61080964, +
5.22e-107FFCP PHASE2:Hg19::chr14:68233218..68233229,-#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr14:68233218..68233229, -
5.22e-107FFCP PHASE1:Hg19::chr3:119198717..119198735,+#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr3:119198717..119198735, +
5.22e-107FFCP PHASE2:Hg19::chr3:119198717..119198735,+#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr3:119198717..119198735, +
5.22e-107FFCP PHASE2:Hg19::chr2:61080954..61080964,+#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr2:61080954..61080964, +
5.22e-107FFCP PHASE1:Hg19::chr14:68233218..68233229,-#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr14:68233218..68233229, -
5.22e-107FFCP PHASE1:Hg19::chr18:59991691..59991708,+#_7f6161daa184ff20fdd0c8a918f5dc1fp@chr18:59991691..59991708, +
4.24e-104FFCP PHASE2:Hg19::chr16:10960091..10960099,+#_bfcb99f8d5e721ec5bb535e7cfc6ab79p3@AB463580
4.24e-104FFCP PHASE1:Hg19::chr16:10960091..10960099,+#_bfcb99f8d5e721ec5bb535e7cfc6ab79p3@AB463580
2.9e-97FFCP PHASE2:Hg19::chr16:57398441..57398460,+#_ab0b563d097bcb9a07b0ba130b2ad4d4p@chr16:57398441..57398460, +
2.9e-97FFCP PHASE1:Hg19::chr16:57398441..57398460,+#_ab0b563d097bcb9a07b0ba130b2ad4d4p@chr16:57398441..57398460, +
2.9e-97FFCP PHASE1:Hg19::chr12:112513512..112513567,-#_ab0b563d097bcb9a07b0ba130b2ad4d4p@chr12:112513512..112513567, -
2.9e-97FFCP PHASE2:Hg19::chr12:112513512..112513567,-#_ab0b563d097bcb9a07b0ba130b2ad4d4p@chr12:112513512..112513567, -
1.57e-95FFCP PHASE2:Hg19::chr7:150066722..150066738,+#_cd4840276288ab740f242b6d9c0aa675p10@REPIN1
1.57e-95FFCP PHASE1:Hg19::chr7:150066722..150066738,+#_cd4840276288ab740f242b6d9c0aa675p10@REPIN1
2.01e-95FFCP PHASE1:Hg19::chr13:75884320..75884362,-#_cec99754e1cae439feb45bb161292a64p@chr13:75884320..75884362, -
2.01e-95FFCP PHASE2:Hg19::chr13:75884320..75884362,-#_cec99754e1cae439feb45bb161292a64p@chr13:75884320..75884362, -
5.68e-92FFCP PHASE2:Hg19::chr11:117805926..117805937,+#_06e3273ecc959ed3c8190c40f9403f4ep@chr11:117805926..117805937, +
5.68e-92FFCP PHASE1:Hg19::chr11:117805926..117805937,+#_06e3273ecc959ed3c8190c40f9403f4ep@chr11:117805926..117805937, +
6.65e-92FFCP PHASE1:Hg19::chr10:61810336..61810349,+#_17fa55682aed5b189c7c04768ba8f726p@chr10:61810336..61810349, +
6.65e-92FFCP PHASE2:Hg19::chr10:61810336..61810349,+#_17fa55682aed5b189c7c04768ba8f726p@chr10:61810336..61810349, +
6.65e-92FFCP PHASE2:Hg19::chr16:57398263..57398266,+#_17fa55682aed5b189c7c04768ba8f726p@chr16:57398263..57398266, +
6.65e-92FFCP PHASE1:Hg19::chr16:57398263..57398266,+#_17fa55682aed5b189c7c04768ba8f726p@chr16:57398263..57398266, +
7.78e-92FFCP PHASE1:Hg19::chr16:57398271..57398274,+#_e301a2cdf81aac2db0478e63e9ede744p@chr16:57398271..57398274, +
7.78e-92FFCP PHASE2:Hg19::chr16:57398271..57398274,+#_e301a2cdf81aac2db0478e63e9ede744p@chr16:57398271..57398274, +
1.93e-89FFCP PHASE2:Hg19::chr6:32726761..32726781,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr6:32726761..32726781, -
1.93e-89FFCP PHASE1:Hg19::chr13:75884392..75884395,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr13:75884392..75884395, -
1.93e-89FFCP PHASE2:Hg19::chr8:120974832..120974840,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr8:120974832..120974840, +
1.93e-89FFCP PHASE1:Hg19::chr16:10959880..10959887,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap6@AB463580
1.93e-89FFCP PHASE1:Hg19::chr16:10885979..10885991,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr16:10885979..10885991, +
1.93e-89FFCP PHASE1:Hg19::chr3:52813932..52813943,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap11@ITIH1
1.93e-89FFCP PHASE1:Hg19::chr19:45487650..45487661,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr19:45487650..45487661, +
1.93e-89FFCP PHASE2:Hg19::chr13:75884392..75884395,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr13:75884392..75884395, -
1.93e-89FFCP PHASE1:Hg19::chr1:201376546..201376550,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr1:201376546..201376550, +
1.93e-89FFCP PHASE2:Hg19::chr16:10959804..10959811,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap5@AB463580
1.93e-89FFCP PHASE1:Hg19::chr6:32726761..32726781,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr6:32726761..32726781, -
1.93e-89FFCP PHASE2:Hg19::chr6:32729529..32729536,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap3@M95729
1.93e-89FFCP PHASE1:Hg19::chr3:119188705..119188718,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr3:119188705..119188718, +
1.93e-89FFCP PHASE2:Hg19::chr16:10959868..10959879,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap2@AB463580
1.93e-89FFCP PHASE2:Hg19::chr3:119188705..119188718,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr3:119188705..119188718, +
1.93e-89FFCP PHASE2:Hg19::chr16:10885979..10885991,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr16:10885979..10885991, +
1.93e-89FFCP PHASE1:Hg19::chr7:4773446..4773457,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr7:4773446..4773457, -
1.93e-89FFCP PHASE1:Hg19::chr16:10959804..10959811,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap5@AB463580
1.93e-89FFCP PHASE2:Hg19::chr3:52813932..52813943,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap11@ITIH1
1.93e-89FFCP PHASE2:Hg19::chr16:10959880..10959887,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap6@AB463580
1.93e-89FFCP PHASE1:Hg19::chr6:32729529..32729536,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap3@M95729
1.93e-89FFCP PHASE2:Hg19::chr7:4773446..4773457,-#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr7:4773446..4773457, -
1.93e-89FFCP PHASE1:Hg19::chr16:10959868..10959879,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap2@AB463580
1.93e-89FFCP PHASE2:Hg19::chr19:45487650..45487661,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr19:45487650..45487661, +
1.93e-89FFCP PHASE1:Hg19::chr8:120974832..120974840,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr8:120974832..120974840, +
1.93e-89FFCP PHASE2:Hg19::chr1:201376546..201376550,+#_9f49f96bd57a25fd6d5dcfa4dbc1c87ap@chr1:201376546..201376550, +
2.24e-88FFCP PHASE2:Hg19::chr16:57397882..57397931,-#_e94d712097b48c7c83056b6b6c2f3fa2p1@CU693343
2.24e-88FFCP PHASE1:Hg19::chr16:57397882..57397931,-#_e94d712097b48c7c83056b6b6c2f3fa2p1@CU693343
2.51e-88FFCP PHASE1:Hg19::chr16:57397593..57397602,+#_5d429a179c40b07fbe495a7e9962e31cp@chr16:57397593..57397602, +
2.51e-88FFCP PHASE2:Hg19::chr16:57397593..57397602,+#_5d429a179c40b07fbe495a7e9962e31cp@chr16:57397593..57397602, +
3.53e-88FFCP PHASE2:Hg19::chr16:57399022..57399038,+#_8c5b82dae79cb2e57c0993a1085a6d42p@chr16:57399022..57399038, +
3.53e-88FFCP PHASE1:Hg19::chr16:57399022..57399038,+#_8c5b82dae79cb2e57c0993a1085a6d42p@chr16:57399022..57399038, +
7.43e-88FFCP PHASE1:Hg19::chr16:57394436..57394449,+#_e83d7d168155ed0c99e18590f83c99cbp@chr16:57394436..57394449, +
7.43e-88FFCP PHASE2:Hg19::chr16:57394436..57394449,+#_e83d7d168155ed0c99e18590f83c99cbp@chr16:57394436..57394449, +
9.6e-88FFCP PHASE1:Hg19::chr16:57399043..57399070,+#_400a7c7783d49389760e065940938259p@chr16:57399043..57399070, +
9.6e-88FFCP PHASE2:Hg19::chr16:57399043..57399070,+#_400a7c7783d49389760e065940938259p@chr16:57399043..57399070, +
1.09e-87FFCP PHASE2:Hg19::chr16:57397927..57397934,+#_77c403bad37ba1adf026a942f99cb6f5p@chr16:57397927..57397934, +
1.09e-87FFCP PHASE1:Hg19::chr16:57397927..57397934,+#_77c403bad37ba1adf026a942f99cb6f5p@chr16:57397927..57397934, +
2.47e-82FFCP PHASE1:Hg19::chr16:57397735..57397758,-#_c8c945a7d1034e9739341c6fe180ae18p3@CU693343
2.47e-82FFCP PHASE2:Hg19::chr16:57398987..57399006,+#_c8c945a7d1034e9739341c6fe180ae18p@chr16:57398987..57399006, +
2.47e-82FFCP PHASE1:Hg19::chr16:57398987..57399006,+#_c8c945a7d1034e9739341c6fe180ae18p@chr16:57398987..57399006, +
2.47e-82FFCP PHASE2:Hg19::chr16:57397735..57397758,-#_c8c945a7d1034e9739341c6fe180ae18p3@CU693343
1.43e-80FFCP PHASE1:Hg19::chr10:61810305..61810318,+#_06594fbaca0bfda7295980d9760eb3d4p@chr10:61810305..61810318, +
1.43e-80FFCP PHASE2:Hg19::chr10:61810305..61810318,+#_06594fbaca0bfda7295980d9760eb3d4p@chr10:61810305..61810318, +
4.69e-80FFCP PHASE1:Hg19::chr6:341268..341280,-#_72dc91c74d6a051c8a2c483e8ca0044ep@chr6:341268..341280, -
4.69e-80FFCP PHASE2:Hg19::chr6:341268..341280,-#_72dc91c74d6a051c8a2c483e8ca0044ep@chr6:341268..341280, -
2.14e-79FFCP PHASE2:Hg19::chr12:50099795..50099808,-#_e6d518c9940f0139657f55bb5c8a119bp@chr12:50099795..50099808, -
2.14e-79FFCP PHASE1:Hg19::chr12:50099795..50099808,-#_e6d518c9940f0139657f55bb5c8a119bp@chr12:50099795..50099808, -
1.07e-77FFCP PHASE2:Hg19::chr6:337994..338015,+#_f1f6979ceef4005837fb45890e378951p@chr6:337994..338015, +
1.07e-77FFCP PHASE1:Hg19::chr6:337994..338015,+#_f1f6979ceef4005837fb45890e378951p@chr6:337994..338015, +
5.2e-77FFCP PHASE2:Hg19::chr17:1674956..1674967,+#_68dbb7f73d05d7f5244579561ac10a2cp@chr17:1674956..1674967, +
5.2e-77FFCP PHASE1:Hg19::chr17:1674956..1674967,+#_68dbb7f73d05d7f5244579561ac10a2cp@chr17:1674956..1674967, +
7.7e-77FFCP PHASE2:Hg19::chr16:57397561..57397572,+#_c5591d524f3ee23be59b239e41342b75p@chr16:57397561..57397572, +
7.7e-77FFCP PHASE1:Hg19::chr16:57397561..57397572,+#_c5591d524f3ee23be59b239e41342b75p@chr16:57397561..57397572, +
8.79e-75FFCP PHASE1:Hg19::chr1:159272441..159272452,+#_c0621686af8972180e53853ae5301c92p5@FCER1A
8.79e-75FFCP PHASE2:Hg19::chr1:159272441..159272452,+#_c0621686af8972180e53853ae5301c92p5@FCER1A
8.79e-75FFCP PHASE2:Hg19::chr2:173867941..173867955,+#_c0621686af8972180e53853ae5301c92p@chr2:173867941..173867955, +
8.79e-75FFCP PHASE2:Hg19::chr13:75884255..75884262,-#_c0621686af8972180e53853ae5301c92p@chr13:75884255..75884262, -