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CL:0000542

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Name:lymphocyte
Namespace:FANTOM
Definition:"A lymphocyte is a leukocyte commonly found in the blood and lymph that has the characteristics of a large nucleus, a neutral staining cytoplasm, and prominent heterochromatin." [GOC:add, ISBN:0683073696, ISBN:0781735149]
Xrefs:
links:

BTO:0000775

FMA:62863
Comments:Editors note: consider adding taxon constraint to vertebrata (PMID:18025161)


Ontology association
Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.

link to ontology dataset
data


Parents

is_a:CL:0002087(nongranular leukocyte),CL:0002242(nucleate cell)
disjoint_from:CL:0000766(myeloid leukocyte)
develops_from:CL:0000051(common lymphoid progenitor)



Children


is a:CL:0000084 (T cell),CL:0000623 (natural killer cell),CL:0000945 (lymphocyte of B lineage),CL:0002679 (natural helper lymphocyte)
disjoint from:CL:0000451 (dendritic cell)
derives from:FF:0100773 (lymphoblastoid cell line sample)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Cell ontology.


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000542 (lymphocyte), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
2.13e-82FFCP PHASE1:Hg19::chr5:150521260..150521277,-#_1941ec671d22782c0f246e3339a3ddccp5@ANXA6
2.13e-82FFCP PHASE2:Hg19::chr5:150521260..150521277,-#_1941ec671d22782c0f246e3339a3ddccp5@ANXA6
3.17e-82FFCP PHASE2:Hg19::chr11:67206142..67206156,-#_efe776cd297b1a6399f89a6fc45c86d5p@chr11:67206142..67206156, -
3.17e-82FFCP PHASE1:Hg19::chr11:67206142..67206156,-#_efe776cd297b1a6399f89a6fc45c86d5p@chr11:67206142..67206156, -
6.87e-78FFCP PHASE1:Hg19::chr12:9822355..9822366,+#_1d197922be7b21d75d010aa7d4b05938p3@CLEC2D
6.87e-78FFCP PHASE2:Hg19::chr12:9822355..9822366,+#_1d197922be7b21d75d010aa7d4b05938p3@CLEC2D
8.78e-77FFCP PHASE1:Hg19::chr9:35650572..35650659,-#_d4d84e2b37edfd3deaf3bf9ec7fa3715p2@SIT1
8.78e-77FFCP PHASE2:Hg19::chr9:35650572..35650659,-#_d4d84e2b37edfd3deaf3bf9ec7fa3715p2@SIT1
1.12e-76FFCP PHASE2:Hg19::chr9:140356580..140356585,+#_7bb9600f4bd5719d6464b2b57fde2360p@chr9:140356580..140356585, +
1.12e-76FFCP PHASE1:Hg19::chr9:140356580..140356585,+#_7bb9600f4bd5719d6464b2b57fde2360p@chr9:140356580..140356585, +
9.3e-76FFCP PHASE1:Hg19::chr17:37934188..37934202,-#_3e01f72b57f31154891ac2dc80fca9acp8@IKZF3
9.3e-76FFCP PHASE2:Hg19::chr17:37934188..37934202,-#_3e01f72b57f31154891ac2dc80fca9acp8@IKZF3
1.29e-75FFCP PHASE2:Hg19::chr11:118754537..118754552,+#_bacd4182e8a649ab5365b921ca68c97ap3@CXCR5
1.29e-75FFCP PHASE1:Hg19::chr11:118754537..118754552,+#_bacd4182e8a649ab5365b921ca68c97ap3@CXCR5
1.3e-75FFCP PHASE1:Hg19::chr17:38020481..38020506,-#_58c5d7d2950b62d540ffd0d2e510ad1ap7@IKZF3
1.3e-75FFCP PHASE2:Hg19::chr17:38020481..38020506,-#_58c5d7d2950b62d540ffd0d2e510ad1ap7@IKZF3
2.49e-75FFCP PHASE2:Hg19::chr1:207096529..207096554,-#_3c941abc2cdb8757ef3aaa983c70a0fep5@FAIM3
2.49e-75FFCP PHASE1:Hg19::chr1:207096529..207096554,-#_3c941abc2cdb8757ef3aaa983c70a0fep5@FAIM3
7.9e-73FFCP PHASE1:Hg19::chr1:27953007..27953025,-#_4fed614e23f7abc6d7edd6bb80e65069p12@FGR
7.9e-73FFCP PHASE2:Hg19::chr1:27953007..27953025,-#_4fed614e23f7abc6d7edd6bb80e65069p12@FGR
7.87e-72FFCP PHASE2:Hg19::chr6:31540403..31540430,-#_a9b9b45cfcbd6fe50249be1724ad765bp1@LOC100287329
7.87e-72FFCP PHASE1:Hg19::chr6:31540403..31540430,-#_a9b9b45cfcbd6fe50249be1724ad765bp1@LOC100287329
2.14e-71FFCP PHASE1:Hg19::chr14:20811696..20811707,+#_1c2d29db6690d35b253e9c0e085c1683p4@PARP2
2.14e-71FFCP PHASE2:Hg19::chr14:20811696..20811707,+#_1c2d29db6690d35b253e9c0e085c1683p4@PARP2
2.73e-71FFCP PHASE1:Hg19::chr17:38020607..38020621,-#_feed266ac20fac40288921c84881a5d8p9@IKZF3
2.73e-71FFCP PHASE2:Hg19::chr17:38020607..38020621,-#_feed266ac20fac40288921c84881a5d8p9@IKZF3
5.67e-71FFCP PHASE2:Hg19::chr8:71564073..71564104,+#_0765f17bfa563378640180a2dc20c739p@chr8:71564073..71564104, +
5.67e-71FFCP PHASE1:Hg19::chr8:71564073..71564104,+#_0765f17bfa563378640180a2dc20c739p@chr8:71564073..71564104, +
1.15e-70FFCP PHASE2:Hg19::chr11:64107589..64107604,-#_3f38778bc0e1b5043aa17c7f3bff6b12p@chr11:64107589..64107604, -
1.15e-70FFCP PHASE1:Hg19::chr11:64107589..64107604,-#_3f38778bc0e1b5043aa17c7f3bff6b12p@chr11:64107589..64107604, -
1.75e-70FFCP PHASE1:Hg19::chr17:37934204..37934241,-#_b64cb3f85fe5eac0ff2f3aeff6ad3416p3@IKZF3
1.75e-70FFCP PHASE2:Hg19::chr17:37934204..37934241,-#_b64cb3f85fe5eac0ff2f3aeff6ad3416p3@IKZF3
5.83e-70FFCP PHASE2:Hg19::chr3:107844539..107844555,-#_b403f824bf1b41a57886e8e5e6db378d-, p@chr3:107844539..107844555
5.83e-70FFCP PHASE1:Hg19::chr3:107844539..107844555,-#_b403f824bf1b41a57886e8e5e6db378dp@chr3:107844539..107844555, -
6.85e-70FFCP PHASE1:Hg19::chr14:23000807..23000874,+#_5f97ea469e32f6d05909e6fff4c03eedp1@TRAJ12
6.85e-70FFCP PHASE2:Hg19::chr14:23000807..23000874,+#_5f97ea469e32f6d05909e6fff4c03eedp1@TRAJ12
9.9e-70FFCP PHASE2:Hg19::chr11:111224819..111224845,+#_e73512092d938424f9a2f4f148565b19p2@CU689419
9.9e-70FFCP PHASE1:Hg19::chr11:111224819..111224845,+#_e73512092d938424f9a2f4f148565b19p2@CU689419
2.85e-69FFCP PHASE1:Hg19::chr17:38020557..38020572,-#_25c84bbf7c2e4bad1e02108e5b066804p4@IKZF3
2.85e-69FFCP PHASE2:Hg19::chr17:38020557..38020572,-#_25c84bbf7c2e4bad1e02108e5b066804p4@IKZF3
3.14e-69FFCP PHASE2:Hg19::chr5:150521234..150521251,-#_d0dca39417e00060e202b17b59b0ae3ep4@ANXA6
3.14e-69FFCP PHASE1:Hg19::chr5:150521234..150521251,-#_d0dca39417e00060e202b17b59b0ae3ep4@ANXA6
5.7e-69FFCP PHASE1:Hg19::chr19:39108644..39108658,-#_e959aa0768f117b03d0eb093e84b7a28p2@MAP4K1
5.7e-69FFCP PHASE2:Hg19::chr19:39108644..39108658,-#_e959aa0768f117b03d0eb093e84b7a28p2@MAP4K1
1.0e-68FFCP PHASE2:Hg19::chr17:38020516..38020544,-#_01ff8abc4d40e2d18895805a87371be2p5@IKZF3
1.0e-68FFCP PHASE1:Hg19::chr17:38020516..38020544,-#_01ff8abc4d40e2d18895805a87371be2p5@IKZF3
2.01e-68FFCP PHASE1:Hg19::chr1:207096678..207096699,+#_91e60cb5f62aecfdc108c096b5099c36p@chr1:207096678..207096699, +
2.01e-68FFCP PHASE2:Hg19::chr1:207096678..207096699,+#_91e60cb5f62aecfdc108c096b5099c36p@chr1:207096678..207096699, +
8.76e-68FFCP PHASE2:Hg19::chr7:50348268..50348366,+#_94c3592a6705c6a6e5e2f92d43cbf586p4@IKZF1
8.76e-68FFCP PHASE1:Hg19::chr7:50348268..50348366,+#_94c3592a6705c6a6e5e2f92d43cbf586p4@IKZF1
1.11e-67FFCP PHASE2:Hg19::chr11:67203630..67203643,-#_27f951e14cc937b387cfe2fd73815753p2@PTPRCAP
1.11e-67FFCP PHASE1:Hg19::chr11:67203630..67203643,-#_27f951e14cc937b387cfe2fd73815753p2@PTPRCAP
2.67e-67FFCP PHASE2:Mm9::chr4:32335511..32335532,+#_fa95764241a27d6c69360da1d8884552p@chr4:32335511..32335532, +
2.67e-67FFCP PHASE1:Mm9::chr4:32335511..32335532,+#_fa95764241a27d6c69360da1d8884552p@chr4:32335511..32335532, +
8.25e-67FFCP PHASE2:Hg19::chr13:30951074..30951122,-#_a57c69e9ed50d0f019e54b7bacd951d2p1@LINC00426
8.25e-67FFCP PHASE1:Hg19::chr13:30951074..30951122,-#_a57c69e9ed50d0f019e54b7bacd951d2p1@LINC00426
8.97e-67FFCP PHASE1:Hg19::chr18:60825437..60825471,-#_550d2b46efd905d4fb49ce2966e08d9ap@chr18:60825437..60825471, -
8.97e-67FFCP PHASE2:Hg19::chr18:60825437..60825471,-#_550d2b46efd905d4fb49ce2966e08d9ap@chr18:60825437..60825471, -
1.18e-66FFCP PHASE2:Hg19::chr8:28747682..28747705,-#_c26c0bc2d7966d32ef2afe7af0d02706p2@INTS9
1.18e-66FFCP PHASE1:Hg19::chr8:28747682..28747705,-#_c26c0bc2d7966d32ef2afe7af0d02706p2@INTS9
1.3e-66FFCP PHASE1:Mm9::chr4:32422919..32422935,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr4:32422919..32422935, +
1.3e-66FFCP PHASE1:Mm9::chr5:123440486..123440504,-#_138e87caff8bd9bfdff3380fe0b4ef17p@chr5:123440486..123440504, -
1.3e-66FFCP PHASE1:Mm9::chr5:123440767..123440778,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr5:123440767..123440778, +
1.3e-66FFCP PHASE2:Mm9::chr7:132751140..132751183,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr7:132751140..132751183, +
1.3e-66FFCP PHASE2:Mm9::chr4:32422919..32422935,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr4:32422919..32422935, +
1.3e-66FFCP PHASE1:Mm9::chr6:99215016..99215036,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr6:99215016..99215036, +
1.3e-66FFCP PHASE1:Mm9::chr7:132751140..132751183,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr7:132751140..132751183, +
1.3e-66FFCP PHASE2:Mm9::chr6:99215016..99215036,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr6:99215016..99215036, +
1.3e-66FFCP PHASE2:Mm9::chr5:123440486..123440504,-#_138e87caff8bd9bfdff3380fe0b4ef17p@chr5:123440486..123440504, -
1.3e-66FFCP PHASE2:Mm9::chr5:123440767..123440778,+#_138e87caff8bd9bfdff3380fe0b4ef17p@chr5:123440767..123440778, +
2.39e-66FFCP PHASE2:Hg19::chr17:37934280..37934299,-#_8fe3a719a3eb60c532c1df168266d31ep6@IKZF3
2.39e-66FFCP PHASE1:Hg19::chr17:37934280..37934299,-#_8fe3a719a3eb60c532c1df168266d31ep6@IKZF3
2.74e-66FFCP PHASE1:Hg19::chr22:24823517..24823546,+#_648d1e6449e45680b5b04c86da46cb3cp5@ADORA2A
2.74e-66FFCP PHASE2:Hg19::chr22:24823517..24823546,+#_648d1e6449e45680b5b04c86da46cb3cp5@ADORA2A
2.91e-66FFCP PHASE2:Hg19::chr11:64107610..64107648,-#_6ae54b805600cb048c74eb389437383bp@chr11:64107610..64107648, -
2.91e-66FFCP PHASE1:Hg19::chr11:64107610..64107648,-#_6ae54b805600cb048c74eb389437383bp@chr11:64107610..64107648, -
3.71e-66FFCP PHASE1:Hg19::chr9:37037005..37037011,+#_7438c5ea98f94059f7a1791f6c1f4a7bp@chr9:37037005..37037011, +
3.71e-66FFCP PHASE2:Hg19::chr9:37037005..37037011,+#_7438c5ea98f94059f7a1791f6c1f4a7bp@chr9:37037005..37037011, +
1.64e-65FFCP PHASE2:Hg19::chr4:40198602..40198614,+#_457b84b99553c73c5af3d0b084f75d7dp3@RHOH
1.64e-65FFCP PHASE1:Hg19::chr4:40198602..40198614,+#_457b84b99553c73c5af3d0b084f75d7dp3@RHOH
2.06e-65FFCP PHASE1:Hg19::chr6:159528034..159528048,+#_067410cf150c3daed62c83c442926109p@chr6:159528034..159528048, +
2.06e-65FFCP PHASE2:Hg19::chr6:159528034..159528048,+#_067410cf150c3daed62c83c442926109p@chr6:159528034..159528048, +
3.38e-65FFCP PHASE2:Hg19::chr22:50318813..50318835,+#_b25a78c624a31aefa5634065b90668c6p@chr22:50318813..50318835, +
3.38e-65FFCP PHASE1:Hg19::chr22:50318813..50318835,+#_b25a78c624a31aefa5634065b90668c6p@chr22:50318813..50318835, +
5.98e-65FFCP PHASE1:Hg19::chr17:43487780..43487792,-#_4640560e34cf46dcb8f3549cbe000ed7p5@ARHGAP27
5.98e-65FFCP PHASE2:Hg19::chr17:43487780..43487792,-#_4640560e34cf46dcb8f3549cbe000ed7p5@ARHGAP27
6.07e-65FFCP PHASE1:Hg19::chr12:111106975..111106991,-#_0cd0f47740787ef57b99bdd6d8eb839cp@chr12:111106975..111106991, -
6.07e-65FFCP PHASE2:Hg19::chr12:111106975..111106991,-#_0cd0f47740787ef57b99bdd6d8eb839cp@chr12:111106975..111106991, -
6.91e-65FFCP PHASE1:Hg19::chr12:9822334..9822351,+#_40998b497a1b0f4e3507508385915240p2@CLEC2D
6.91e-65FFCP PHASE2:Hg19::chr12:9822334..9822351,+#_40998b497a1b0f4e3507508385915240p2@CLEC2D
1.1e-64FFCP PHASE2:Hg19::chr17:37917880..37917904,-#_34758783cda812c5ca8fd99907227246p1@AK128436
1.1e-64FFCP PHASE1:Hg19::chr17:37917880..37917904,-#_34758783cda812c5ca8fd99907227246p1@AK128436
1.11e-64FFCP PHASE1:Hg19::chr17:66176843..66176848,+#_df97849aacde51f2bf4007ccc2749304p@chr17:66176843..66176848, +
1.11e-64FFCP PHASE2:Hg19::chr17:66176843..66176848,+#_df97849aacde51f2bf4007ccc2749304p@chr17:66176843..66176848, +
1.25e-64FFCP PHASE2:Hg19::chr9:98257510..98257517,-#_049ba9c7561523cc096814faa5b0afcfp@chr9:98257510..98257517, -
1.25e-64FFCP PHASE1:Hg19::chr9:98257510..98257517,-#_049ba9c7561523cc096814faa5b0afcfp@chr9:98257510..98257517, -
1.33e-64FFCP PHASE2:Hg19::chr1:207085241..207085281,-#_f85468f37c0e1bb8609fa397ec9aab18p@chr1:207085241..207085281, -
1.33e-64FFCP PHASE1:Hg19::chr1:207085241..207085281,-#_f85468f37c0e1bb8609fa397ec9aab18p@chr1:207085241..207085281, -
1.78e-64FFCP PHASE1:Hg19::chr9:35650900..35650967,-#_110b7e2bf932bd85d09e9a654d3fa589p1@SIT1
1.78e-64FFCP PHASE2:Hg19::chr9:35650900..35650967,-#_110b7e2bf932bd85d09e9a654d3fa589p1@SIT1