Personal tools

UBERON:0001690

From FANTOM5_SSTAR

Jump to: navigation, search

Name:ear
Namespace:FANTOM
Definition:"Sense organ in vertebrates that is specialized for the detection of sound, and the maintenance of balance. Includes the outer ear and middle ear, which collect and transmit sound waves; and the inner ear, which contains the organs of balance and (except in fish) hearing. Also includes the pinna, the visible part of the outer ear, present in some mammals." [GO:0042471, Wikipedia:Ear]
Xrefs:
links:

AAO:0011014
BTO:0000368
EFO:0000826
EHDAA2:0000423
EHDAA:502
EMAPA:16193
EV:0100353
FMA:52780
GAID:62
galen:Ear
[1]
MA:0000236
MAT:0000138
MESH:A.01.456.313
MIAA:0000138
ncithesaurus:Ear
NIF_GrossAnatomy:birnlex_1062
OpenCyc:Mx4rvViXS5wpEbGdrcN5Y29ycA
OpenCyc:Mx4rvVjL05wpEbGdrcN5Y29ycA
SCTID:1910005
VHOG:0000330

XAO:0000189
Synonyms: "auditory apparatus" RELATED []
"auris" RELATED [BTO:0000368]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_52780-FMA_78500-MA_0000236-MIAA_0000138-XAO_0000189-ZFA_0001138
Subset: organ_slim
uberon_slim

Ontology association
Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.

link to ontology dataset
data


Parents

is_a:UBERON:0000020(sense organ),UBERON:0010314(structure with developmental contribution from neural crest)
part_of:UBERON:0000033(head),UBERON:0002105(vestibulo-auditory system)



Children

part of:UBERON:0001846 (internal ear),UBERON:0003069 (otic placode),UBERON:0015807 (ear epithelium)

Ontology Tree: Loaded from BioPortal


FF samples
It includes FANTOM5 samples that overlay the Uberon ontology


Mouse (Mus musculus)

  • 12157-128G6 (Sox2+ Supporting cells - organ of corti, pool1)
  • 12158-128G7 (Atoh+ Inner ear hair cells - organ of corti, pool1)
  • 12215-129E1 (Inner ear stem cells, 1st generation stem cells, pool1)
  • 12216-129E2 (Inner ear stem cells, 4th generation stem cells, pool1)
  • 12217-129E3 (Inner ear stem cells, differentiation, day03, pool1)
  • 12218-129E4 (Inner ear stem cells, differentiation, day10, pool1)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001690 (ear), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.87e-86FFCP PHASE1:Mm9::chr15:65641741..65641748,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:65641741..65641748, +
1.87e-86FFCP PHASE1:Mm9::chr12:13572961..13572974,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:13572961..13572974, +
1.87e-86FFCP PHASE1:Mm9::chr4:63079735..63079745,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr4:63079735..63079745, -
1.87e-86FFCP PHASE2:Mm9::chr5:150945209..150945220,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:150945209..150945220, +
1.87e-86FFCP PHASE2:Mm9::chr12:77084875..77084885,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:77084875..77084885, +
1.87e-86FFCP PHASE2:Mm9::chr13:78322383..78322395,-#_1d13cb136fd2abf98a4e0d45469142ffp2@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr5:3909310..3909321,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:3909310..3909321, +
1.87e-86FFCP PHASE2:Mm9::chr14:102297747..102297765,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:102297747..102297765, +
1.87e-86FFCP PHASE2:Mm9::chr1:154246932..154246939,+#_1d13cb136fd2abf98a4e0d45469142ffp7@Glt25d2
1.87e-86FFCP PHASE1:Mm9::chr1:194818647..194818660,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE1:Mm9::chr9:42207852..42207876,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Tecta
1.87e-86FFCP PHASE1:Mm9::chr7:29733825..29733837,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr7:29733825..29733837, -
1.87e-86FFCP PHASE1:Mm9::chr19:22767090..22767099,+#_1d13cb136fd2abf98a4e0d45469142ffp18@Trpm3
1.87e-86FFCP PHASE1:Mm9::chr4:154208086..154208123,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr4:154208086..154208123, +
1.87e-86FFCP PHASE2:Mm9::chr8:13425469..13425503,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr8:13425469..13425503, +
1.87e-86FFCP PHASE2:Mm9::chr1:194818647..194818660,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:194818647..194818660, -
1.87e-86FFCP PHASE1:Mm9::chr19:55255206..55255223,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Tectb
1.87e-86FFCP PHASE1:Mm9::chr13:78322370..78322376,-#_1d13cb136fd2abf98a4e0d45469142ffp4@uc007rhb.1
1.87e-86FFCP PHASE2:Mm9::chr11:11599532..11599539,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:11599532..11599539, -
1.87e-86FFCP PHASE1:Mm9::chr9:42206730..42206739,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42206730..42206739, -
1.87e-86FFCP PHASE1:Mm9::chr13:43699188..43699216,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:43699188..43699216, +
1.87e-86FFCP PHASE2:Mm9::chr15:85334335..85334353,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:85334335..85334353, +
1.87e-86FFCP PHASE2:Mm9::chr6:113251614..113251623,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:113251614..113251623, +
1.87e-86FFCP PHASE1:Mm9::chr17:13983179..13983190,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:13983179..13983190, +
1.87e-86FFCP PHASE1:Mm9::chr5:21371424..21371435,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Slc26a5
1.87e-86FFCP PHASE1:Mm9::chr1:93218682..93218691,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Espnl
1.87e-86FFCP PHASE2:Mm9::chr3:35012425..35012439,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:35012425..35012439, +
1.87e-86FFCP PHASE2:Mm9::chr7:53496326..53496340,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Otog
1.87e-86FFCP PHASE1:Mm9::chr10:107349418..107349423,-#_1d13cb136fd2abf98a4e0d45469142ffp5@Otogl
1.87e-86FFCP PHASE2:Mm9::chr10:80806020..80806031,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Gipc3
1.87e-86FFCP PHASE1:Mm9::chr15:89215333..89215341,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr15:58022966..58022995,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:58022966..58022995, -
1.87e-86FFCP PHASE1:Mm9::chr14:31283085..31283097,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:31283085..31283097, -
1.87e-86FFCP PHASE2:Mm9::chr3:154693281..154693317,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:154693281..154693317, -
1.87e-86FFCP PHASE1:Mm9::chr1:16651649..16651655,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:16651649..16651655, +
1.87e-86FFCP PHASE2:Mm9::chr14:47293487..47293493,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr14:47293487..47293493, -
1.87e-86FFCP PHASE1:Mm9::chr16:93971367..93971379,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr16:93971367..93971379, -
1.87e-86FFCP PHASE2:Mm9::chr2:67011941..67011951,+#_1d13cb136fd2abf98a4e0d45469142ffp3@Gm1322
1.87e-86FFCP PHASE2:Mm9::chr10:107349309..107349318,-#_1d13cb136fd2abf98a4e0d45469142ffp4@Otogl
1.87e-86FFCP PHASE2:Mm9::chr17:31335953..31335957,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr12:109905468..109905474,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:109905468..109905474, +
1.87e-86FFCP PHASE2:Mm9::chr9:42207697..42207705,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42207697..42207705, -
1.87e-86FFCP PHASE1:Mm9::chr2:152453066..152453075,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr19:10536767..10536777,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr19:10536767..10536777, -
1.87e-86FFCP PHASE1:Mm9::chr5:3909310..3909321,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:3909310..3909321, +
1.87e-86FFCP PHASE1:Mm9::chr11:11599532..11599539,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:11599532..11599539, -
1.87e-86FFCP PHASE2:Mm9::chr15:89215333..89215341,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:89215333..89215341, +
1.87e-86FFCP PHASE2:Mm9::chr17:13983198..13983203,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:13983198..13983203, +
1.87e-86FFCP PHASE2:Mm9::chr15:12848147..12848162,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:12848147..12848162, +
1.87e-86FFCP PHASE2:Mm9::chr2:152453066..152453075,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:152453066..152453075, -
1.87e-86FFCP PHASE2:Mm9::chr18:81327205..81327211,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr18:81327205..81327211, +
1.87e-86FFCP PHASE1:Mm9::chr9:42208023..42208043,-#_1d13cb136fd2abf98a4e0d45469142ffp4@Tecta
1.87e-86FFCP PHASE2:Mm9::chr13:43699228..43699239,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:43699228..43699239, +
1.87e-86FFCP PHASE1:Mm9::chr17:31335953..31335957,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Tmprss3
1.87e-86FFCP PHASE1:Mm9::chr5:30710455..30710464,-#_1d13cb136fd2abf98a4e0d45469142ffp9@Otof
1.87e-86FFCP PHASE1:Mm9::chr2:73232344..73232356,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr9:42208142..42208157,-#_1d13cb136fd2abf98a4e0d45469142ffp10@Tecta
1.87e-86FFCP PHASE2:Mm9::chr2:128881546..128881553,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:128881546..128881553, -
1.87e-86FFCP PHASE2:Mm9::chr7:109052262..109052291,-#_1d13cb136fd2abf98a4e0d45469142ffp1@Tomt
1.87e-86FFCP PHASE2:Mm9::chr13:78257454..78257465,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:78257454..78257465, +
1.87e-86FFCP PHASE2:Mm9::chr4:115556989..115556997,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Kncn
1.87e-86FFCP PHASE1:Mm9::chr9:42207697..42207705,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42207697..42207705, -
1.87e-86FFCP PHASE2:Mm9::chr2:53464178..53464186,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:53464178..53464186, +
1.87e-86FFCP PHASE1:Mm9::chr13:48087761..48087775,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr13:48087761..48087775, -
1.87e-86FFCP PHASE1:Mm9::chr2:67011941..67011951,+#_1d13cb136fd2abf98a4e0d45469142ffp3@Gm1322
1.87e-86FFCP PHASE1:Mm9::chr4:115556972..115556979,+#_1d13cb136fd2abf98a4e0d45469142ffp3@Kncn
1.87e-86FFCP PHASE1:Mm9::chr13:76964459..76964469,+#_1d13cb136fd2abf98a4e0d45469142ffp15@Mctp1
1.87e-86FFCP PHASE2:Mm9::chr5:30710416..30710440,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Otof
1.87e-86FFCP PHASE2:Mm9::chr15:58480061..58480066,+#_1d13cb136fd2abf98a4e0d45469142ffp5@Fer1l6
1.87e-86FFCP PHASE1:Mm9::chr11:120222470..120222516,+#_1d13cb136fd2abf98a4e0d45469142ffp2@Fscn2
1.87e-86FFCP PHASE2:Mm9::chr2:121206667..121206674,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Strc
1.87e-86FFCP PHASE1:Mm9::chr1:172843847..172843880,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:172843847..172843880, -
1.87e-86FFCP PHASE1:Mm9::chr9:41495920..41495928,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:41495920..41495928, -
1.87e-86FFCP PHASE2:Mm9::chr8:94180607..94180619,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr8:94180607..94180619, -
1.87e-86FFCP PHASE1:Mm9::chr10:81091447..81091464,+#_1d13cb136fd2abf98a4e0d45469142ffp9@Ankrd24
1.87e-86FFCP PHASE2:Mm9::chr11:114603036..114603048,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr11:114603036..114603048, +
1.87e-86FFCP PHASE1:Mm9::chr5:147854240..147854249,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr5:147854240..147854249, -
1.87e-86FFCP PHASE1:Mm9::chr2:53464168..53464175,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:53464168..53464175, +
1.87e-86FFCP PHASE2:Mm9::chr1:172843813..172843834,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:172843813..172843834, -
1.87e-86FFCP PHASE1:Mm9::chr7:139597684..139597691,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr7:139597684..139597691, +
1.87e-86FFCP PHASE2:Mm9::chr2:73232344..73232356,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr2:73232344..73232356, -
1.87e-86FFCP PHASE2:Mm9::chr9:42207852..42207876,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Tecta
1.87e-86FFCP PHASE2:Mm9::chr12:13508046..13508055,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr12:13508046..13508055, +
1.87e-86FFCP PHASE1:Mm9::chr8:125802236..125802251,-#_1d13cb136fd2abf98a4e0d45469142ffp3@Fanca
1.87e-86FFCP PHASE1:Mm9::chr18:42158627..42158630,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr18:42158627..42158630, -
1.87e-86FFCP PHASE1:Mm9::chr2:121206667..121206674,-#_1d13cb136fd2abf98a4e0d45469142ffp2@Strc
1.87e-86FFCP PHASE1:Mm9::chr6:113251606..113251613,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:113251606..113251613, +
1.87e-86FFCP PHASE2:Mm9::chr6:30619443..30619450,-#_1d13cb136fd2abf98a4e0d45469142ffp13@Tsga14
1.87e-86FFCP PHASE2:Mm9::chrX:154140800..154140810,+#_1d13cb136fd2abf98a4e0d45469142ffp@chrX:154140800..154140810, +
1.87e-86FFCP PHASE1:Mm9::chr6:86745686..86745727,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr6:86745686..86745727, -
1.87e-86FFCP PHASE2:Mm9::chr19:55256373..55256384,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr19:55256373..55256384, +
1.87e-86FFCP PHASE1:Mm9::chr3:154459231..154459240,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:154459231..154459240, +
1.87e-86FFCP PHASE2:Mm9::chr9:42206745..42206774,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr9:42206745..42206774, -
1.87e-86FFCP PHASE2:Mm9::chr1:93235228..93235249,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr1:93235228..93235249, +
1.87e-86FFCP PHASE2:Mm9::chr15:65641741..65641748,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:65641741..65641748, +
1.87e-86FFCP PHASE1:Mm9::chr15:65641779..65641790,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr15:65641779..65641790, +
1.87e-86FFCP PHASE2:Mm9::chr10:67371994..67372010,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr10:67371994..67372010, +
1.87e-86FFCP PHASE1:Mm9::chr3:58626291..58626298,-#_1d13cb136fd2abf98a4e0d45469142ffp@chr3:58626291..58626298, -
1.87e-86FFCP PHASE2:Mm9::chr17:13983095..13983100,+#_1d13cb136fd2abf98a4e0d45469142ffp@chr17:13983095..13983100, +
1.87e-86FFCP PHASE1:Mm9::chr7:53496326..53496340,+#_1d13cb136fd2abf98a4e0d45469142ffp1@Otog