Coexpression cluster:C148: Difference between revisions
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{{Coexpression_clusters | {{Coexpression_clusters|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.267491812392555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.424051415134158,0.757465338191359,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|full_id=C148_kidney_small_epididymis_pancreas_serous_duodenum_temporal|gostat_on_coexpression_clusters=GO:0007588!excretion!4.69476442232949e-05!7827;1184;1188;363$GO:0044459!plasma membrane part!0.000369429091675413!9390;3772;1184;83478;348932;23037;6569;8029;7827;1188;5314;363$GO:0044425!membrane part!0.000491070884924165!9390;3772;83478;2326;120071;26002;10941;134288;23224;7827;8029;63917;160728;363;1184;348932;23037;6569;1188;5314$GO:0031226!intrinsic to plasma membrane!0.000743698624798823!9390;3772;1184;348932;6569;7827;1188;5314;363$GO:0016020!membrane!0.00167739726344641!9390;3772;287;83478;2326;26002;120071;10941;134288;23224;7827;8029;63917;160728;363;1184;348932;23037;6569;1188;5314;5972$GO:0046903!secretion!0.00251565466945001!6569;7827;1184;1188;363$GO:0016021!integral to membrane!0.00251565466945001!9390;3772;2326;120071;26002;10941;134288;23224;7827;63917;160728;363;1184;348932;6569;1188;5314$GO:0005887!integral to plasma membrane!0.00251565466945001!9390;3772;1184;348932;6569;7827;1188;363$GO:0031224!intrinsic to membrane!0.00251565466945001!9390;3772;2326;120071;26002;10941;134288;23224;7827;63917;160728;363;1184;348932;6569;1188;5314$GO:0032501!multicellular organismal process!0.0027725832037263!2299;1184;83478;2016;120071;6569;10941;7827;8029;3234;1188;5972;363$GO:0012505!endomembrane system!0.00302972197827191!26002;120071;23224;63917;1184;2326;363$GO:0031090!organelle membrane!0.00459785562354463!1184;2326;120071;26002;8029;63917;23224;363$GO:0005886!plasma membrane!0.00967451780968439!9390;3772;1184;83478;348932;23037;6569;8029;7827;1188;5314;363$GO:0005737!cytoplasm!0.0108855830699133!287;83478;2326;26002;120071;55586;23224;8029;63917;10542;363;1184;51179;23037;8854;92292;5314$GO:0044464!cell part!0.0114132230029425!9390;3772;287;83478;120071;55586;51710;3234;63917;160728;363;1184;51179;2103;348932;6569;92292;5972;2104;2326;26002;8029;7827;23224;134288;10941;10542;2299;2016;23037;8854;1188;5314$GO:0016439!tRNA-pseudouridine synthase activity!0.0152417009374672!2104;2103$GO:0009982!pseudouridine synthase activity!0.0180476872763543!2104;2103$GO:0005247!voltage-gated chloride channel activity!0.0199239795702984!1184;1188$GO:0003008!system process!0.0204564771126168!10941;7827;2299;1184;1188;5972;363$GO:0022844!voltage-gated anion channel activity!0.0204708225188006!1184;1188$GO:0004195!renin activity!0.0204708225188006!5972$GO:0019310!inositol catabolic process!0.0204708225188006!55586$GO:0050113!inositol oxygenase activity!0.0204708225188006!55586$GO:0044463!cell projection part!0.0206159692822967!8029;5314$GO:0051179!localization!0.0207262091043669!9390;3772;1184;348932;2326;6569;8029;7827;1188;5314;160728;363$GO:0022857!transmembrane transporter activity!0.0207262091043669!9390;6569;3772;1184;1188;348932;363$GO:0009897!external side of plasma membrane!0.0207262091043669!8029;5314$GO:0008509!anion transmembrane transporter activity!0.0212055471294034!6569;1184;1188$GO:0044424!intracellular part!0.0223612507441932!287;2104;83478;2326;26002;120071;55586;51710;23224;3234;63917;8029;10542;363;1184;2299;2016;51179;2103;23037;8854;92292;5314$GO:0044444!cytoplasmic part!0.0223612507441932!1184;51179;2326;23037;26002;120071;8029;63917;92292;5314;10542;363$GO:0031404!chloride ion binding!0.0223612507441932!1184;1188$GO:0043168!anion binding!0.0223612507441932!1184;1188$GO:0043565!sequence-specific DNA binding!0.0223612507441932!3234;2299;2104;2016;2103$GO:0022892!substrate-specific transporter activity!0.0223612507441932!9390;6569;3772;1184;1188;348932;363$GO:0031233!intrinsic to external side of plasma membrane!0.0223612507441932!5314$GO:0002003!angiotensin maturation!0.0223612507441932!5972$GO:0016899!oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor!0.0223612507441932!51179$GO:0031362!anchored to external side of plasma membrane!0.0223612507441932!5314$GO:0003973!(S)-2-hydroxy-acid oxidase activity!0.0223612507441932!51179$GO:0060177!regulation of angiotensin metabolic process!0.0223612507441932!5972$GO:0002002!regulation of angiotensin levels in blood!0.0223612507441932!5972$GO:0015075!ion transmembrane transporter activity!0.0223612507441932!9390;6569;3772;1184;1188;348932$GO:0051234!establishment of localization!0.0223612507441932!9390;3772;1184;348932;2326;6569;8029;7827;1188;160728;363$GO:0043229!intracellular organelle!0.0223612507441932!287;2104;83478;2326;26002;120071;51710;23224;3234;63917;8029;363;1184;2299;2016;51179;2103;23037;92292;5314$GO:0043226!organelle!0.0223612507441932!287;2104;83478;2326;26002;120071;51710;23224;3234;63917;8029;363;1184;2299;2016;51179;2103;23037;92292;5314$GO:0016866!intramolecular transferase activity!0.0223612507441932!2104;2103$GO:0015698!inorganic anion transport!0.0235319780175291!6569;1184;1188$GO:0065008!regulation of biological quality!0.0261309910929981!120071;6569;8029;5314;5972$GO:0016758!transferase activity, transferring hexosyl groups!0.0261309910929981!120071;10941;63917$GO:0047961!glycine N-acyltransferase activity!0.0261309910929981!92292$GO:0001758!retinal dehydrogenase activity!0.0261309910929981!8854$GO:0001991!regulation of systemic arterial blood pressure by circulatory renin-angiotensin!0.0261309910929981!5972$GO:0031232!extrinsic to external side of plasma membrane!0.0261309910929981!8029$GO:0050682!AF-2 domain binding!0.0261309910929981!2104$GO:0005254!chloride channel activity!0.0270199451283884!1184;1188$GO:0005496!steroid binding!0.0281266315934844!2104;2103$GO:0044440!endosomal part!0.0281266315934844!8029;1184$GO:0010008!endosome membrane!0.0281266315934844!8029;1184$GO:0006821!chloride transport!0.0282822587475936!1184;1188$GO:0001561!fatty acid alpha-oxidation!0.030349766851108!51179$GO:0003081!regulation of systemic arterial blood pressure by renin-angiotensin!0.030349766851108!5972$GO:0022891!substrate-specific transmembrane transporter activity!0.030349766851108!9390;6569;3772;1184;1188;348932$GO:0043231!intracellular membrane-bound organelle!0.030349766851108!2104;2326;26002;120071;51710;23224;3234;63917;8029;363;1184;2299;2016;51179;2103;23037;92292$GO:0043227!membrane-bound organelle!0.030349766851108!2104;2326;26002;120071;51710;23224;3234;63917;8029;363;1184;2299;2016;51179;2103;23037;92292$GO:0022832!voltage-gated channel activity!0.030349766851108!3772;1184;1188$GO:0005244!voltage-gated ion channel activity!0.030349766851108!3772;1184;1188$GO:0006820!anion transport!0.030349766851108!6569;1184;1188$GO:0005253!anion channel activity!0.0321985993264693!1184;1188$GO:0015321!sodium-dependent phosphate transmembrane transporter activity!0.0323765415667876!6569$GO:0046716!muscle maintenance!0.0323765415667876!120071$GO:0015889!cobalamin transport!0.0323765415667876!8029$GO:0005932!basal body!0.0323765415667876!5314$GO:0005624!membrane fraction!0.0323765415667876!9390;3772;1188;2326$GO:0022838!substrate specific channel activity!0.0329349463092681!3772;1184;1188;363$GO:0022803!passive transmembrane transporter activity!0.0335606986987906!3772;1184;1188;363$GO:0015267!channel activity!0.0335606986987906!3772;1184;1188;363$GO:0006810!transport!0.0356531845066796!9390;3772;1184;348932;2326;6569;8029;1188;160728;363$GO:0004028!3-chloroallyl aldehyde dehydrogenase activity!0.0356531845066796!8854$GO:0016234!inclusion body!0.0356531845066796!55586$GO:0000139!Golgi membrane!0.0356531845066796!120071;63917;1184$GO:0003707!steroid hormone receptor activity!0.0366536216945416!2104;2103$GO:0007350!blastoderm segmentation!0.038657912761358!3234$GO:0000578!embryonic axis specification!0.038657912761358!3234$GO:0008595!determination of anterior/posterior axis, embryo!0.038657912761358!3234$GO:0007351!tripartite regional subdivision!0.038657912761358!3234$GO:0050886!endocrine process!0.0421737357853155!5972$GO:0015250!water channel activity!0.0421737357853155!363$GO:0004500!dopamine beta-monooxygenase activity!0.0421737357853155!26002$GO:0001990!regulation of systemic arterial blood pressure by hormone!0.0421737357853155!5972$GO:0008194!UDP-glycosyltransferase activity!0.0448993015915283!10941;63917$GO:0044431!Golgi apparatus part!0.0448993015915283!120071;63917;1184$GO:0043154!negative regulation of caspase activity!0.0448993015915283!10542$GO:0031419!cobalamin binding!0.0448993015915283!8029$GO:0031526!brush border membrane!0.0448993015915283!8029$GO:0009986!cell surface!0.0488243607667879!8029;5314$GO:0015101!organic cation transmembrane transporter activity!0.0488243607667879!9390$GO:0016757!transferase activity, transferring glycosyl groups!0.0490788170595549!120071;10941;63917$GO:0006066!alcohol metabolic process!0.0490788170595549!26002;55586;8029$GO:0004879!ligand-dependent nuclear receptor activity!0.0490788170595549!2104;2103$GO:0005372!water transporter activity!0.0490788170595549!363$GO:0004499!flavin-containing monooxygenase activity!0.0490788170595549!2326$GO:0016715!oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen!0.0490788170595549!26002$GO:0031253!cell projection membrane!0.0490788170595549!8029$GO:0009948!anterior/posterior axis specification!0.0490788170595549!3234$GO:0008301!DNA bending 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Latest revision as of 10:42, 17 September 2013
Full id: C148_kidney_small_epididymis_pancreas_serous_duodenum_temporal
Phase1 CAGE Peaks
Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data
No results for this coexpression
Enriched Gene Ontology terms on this co-expression cluster<b>Summary:</b> Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br>data
GO ID | GO name | FDR corrected p-value |
---|---|---|
GO:0007588 | excretion | 4.69476442232949e-05 |
GO:0044459 | plasma membrane part | 0.000369429091675413 |
GO:0044425 | membrane part | 0.000491070884924165 |
GO:0031226 | intrinsic to plasma membrane | 0.000743698624798823 |
GO:0016020 | membrane | 0.00167739726344641 |
GO:0046903 | secretion | 0.00251565466945001 |
GO:0016021 | integral to membrane | 0.00251565466945001 |
GO:0005887 | integral to plasma membrane | 0.00251565466945001 |
GO:0031224 | intrinsic to membrane | 0.00251565466945001 |
GO:0032501 | multicellular organismal process | 0.0027725832037263 |
GO:0012505 | endomembrane system | 0.00302972197827191 |
GO:0031090 | organelle membrane | 0.00459785562354463 |
GO:0005886 | plasma membrane | 0.00967451780968439 |
GO:0005737 | cytoplasm | 0.0108855830699133 |
GO:0044464 | cell part | 0.0114132230029425 |
GO:0016439 | tRNA-pseudouridine synthase activity | 0.0152417009374672 |
GO:0009982 | pseudouridine synthase activity | 0.0180476872763543 |
GO:0005247 | voltage-gated chloride channel activity | 0.0199239795702984 |
GO:0003008 | system process | 0.0204564771126168 |
GO:0022844 | voltage-gated anion channel activity | 0.0204708225188006 |
GO:0004195 | renin activity | 0.0204708225188006 |
GO:0019310 | inositol catabolic process | 0.0204708225188006 |
GO:0050113 | inositol oxygenase activity | 0.0204708225188006 |
GO:0044463 | cell projection part | 0.0206159692822967 |
GO:0051179 | localization | 0.0207262091043669 |
GO:0022857 | transmembrane transporter activity | 0.0207262091043669 |
GO:0009897 | external side of plasma membrane | 0.0207262091043669 |
GO:0008509 | anion transmembrane transporter activity | 0.0212055471294034 |
GO:0044424 | intracellular part | 0.0223612507441932 |
GO:0044444 | cytoplasmic part | 0.0223612507441932 |
GO:0031404 | chloride ion binding | 0.0223612507441932 |
GO:0043168 | anion binding | 0.0223612507441932 |
GO:0043565 | sequence-specific DNA binding | 0.0223612507441932 |
GO:0022892 | substrate-specific transporter activity | 0.0223612507441932 |
GO:0031233 | intrinsic to external side of plasma membrane | 0.0223612507441932 |
GO:0002003 | angiotensin maturation | 0.0223612507441932 |
GO:0016899 | oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor | 0.0223612507441932 |
GO:0031362 | anchored to external side of plasma membrane | 0.0223612507441932 |
GO:0003973 | (S)-2-hydroxy-acid oxidase activity | 0.0223612507441932 |
GO:0060177 | regulation of angiotensin metabolic process | 0.0223612507441932 |
GO:0002002 | regulation of angiotensin levels in blood | 0.0223612507441932 |
GO:0015075 | ion transmembrane transporter activity | 0.0223612507441932 |
GO:0051234 | establishment of localization | 0.0223612507441932 |
GO:0043229 | intracellular organelle | 0.0223612507441932 |
GO:0043226 | organelle | 0.0223612507441932 |
GO:0016866 | intramolecular transferase activity | 0.0223612507441932 |
GO:0015698 | inorganic anion transport | 0.0235319780175291 |
GO:0065008 | regulation of biological quality | 0.0261309910929981 |
GO:0016758 | transferase activity, transferring hexosyl groups | 0.0261309910929981 |
GO:0047961 | glycine N-acyltransferase activity | 0.0261309910929981 |
GO:0001758 | retinal dehydrogenase activity | 0.0261309910929981 |
GO:0001991 | regulation of systemic arterial blood pressure by circulatory renin-angiotensin | 0.0261309910929981 |
GO:0031232 | extrinsic to external side of plasma membrane | 0.0261309910929981 |
GO:0050682 | AF-2 domain binding | 0.0261309910929981 |
GO:0005254 | chloride channel activity | 0.0270199451283884 |
GO:0005496 | steroid binding | 0.0281266315934844 |
GO:0044440 | endosomal part | 0.0281266315934844 |
GO:0010008 | endosome membrane | 0.0281266315934844 |
GO:0006821 | chloride transport | 0.0282822587475936 |
GO:0001561 | fatty acid alpha-oxidation | 0.030349766851108 |
GO:0003081 | regulation of systemic arterial blood pressure by renin-angiotensin | 0.030349766851108 |
GO:0022891 | substrate-specific transmembrane transporter activity | 0.030349766851108 |
GO:0043231 | intracellular membrane-bound organelle | 0.030349766851108 |
GO:0043227 | membrane-bound organelle | 0.030349766851108 |
GO:0022832 | voltage-gated channel activity | 0.030349766851108 |
GO:0005244 | voltage-gated ion channel activity | 0.030349766851108 |
GO:0006820 | anion transport | 0.030349766851108 |
GO:0005253 | anion channel activity | 0.0321985993264693 |
GO:0015321 | sodium-dependent phosphate transmembrane transporter activity | 0.0323765415667876 |
GO:0046716 | muscle maintenance | 0.0323765415667876 |
GO:0015889 | cobalamin transport | 0.0323765415667876 |
GO:0005932 | basal body | 0.0323765415667876 |
GO:0005624 | membrane fraction | 0.0323765415667876 |
GO:0022838 | substrate specific channel activity | 0.0329349463092681 |
GO:0022803 | passive transmembrane transporter activity | 0.0335606986987906 |
GO:0015267 | channel activity | 0.0335606986987906 |
GO:0006810 | transport | 0.0356531845066796 |
GO:0004028 | 3-chloroallyl aldehyde dehydrogenase activity | 0.0356531845066796 |
GO:0016234 | inclusion body | 0.0356531845066796 |
GO:0000139 | Golgi membrane | 0.0356531845066796 |
GO:0003707 | steroid hormone receptor activity | 0.0366536216945416 |
GO:0007350 | blastoderm segmentation | 0.038657912761358 |
GO:0000578 | embryonic axis specification | 0.038657912761358 |
GO:0008595 | determination of anterior/posterior axis, embryo | 0.038657912761358 |
GO:0007351 | tripartite regional subdivision | 0.038657912761358 |
GO:0050886 | endocrine process | 0.0421737357853155 |
GO:0015250 | water channel activity | 0.0421737357853155 |
GO:0004500 | dopamine beta-monooxygenase activity | 0.0421737357853155 |
GO:0001990 | regulation of systemic arterial blood pressure by hormone | 0.0421737357853155 |
GO:0008194 | UDP-glycosyltransferase activity | 0.0448993015915283 |
GO:0044431 | Golgi apparatus part | 0.0448993015915283 |
GO:0043154 | negative regulation of caspase activity | 0.0448993015915283 |
GO:0031419 | cobalamin binding | 0.0448993015915283 |
GO:0031526 | brush border membrane | 0.0448993015915283 |
GO:0009986 | cell surface | 0.0488243607667879 |
GO:0015101 | organic cation transmembrane transporter activity | 0.0488243607667879 |
GO:0016757 | transferase activity, transferring glycosyl groups | 0.0490788170595549 |
GO:0006066 | alcohol metabolic process | 0.0490788170595549 |
GO:0004879 | ligand-dependent nuclear receptor activity | 0.0490788170595549 |
GO:0005372 | water transporter activity | 0.0490788170595549 |
GO:0004499 | flavin-containing monooxygenase activity | 0.0490788170595549 |
GO:0016715 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced ascorbate as one donor, and incorporation of one atom of oxygen | 0.0490788170595549 |
GO:0031253 | cell projection membrane | 0.0490788170595549 |
GO:0009948 | anterior/posterior axis specification | 0.0490788170595549 |
GO:0008301 | DNA bending activity | 0.0490788170595549 |
Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>
Ontology term | p-value | n |
---|---|---|
kidney | 2.63e-11 | 26 |
kidney mesenchyme | 2.63e-11 | 26 |
upper urinary tract | 2.63e-11 | 26 |
kidney rudiment | 2.63e-11 | 26 |
kidney field | 2.63e-11 | 26 |
cavitated compound organ | 1.15e-09 | 31 |
urinary system structure | 9.72e-07 | 47 |
Overrepresented TFBS (DNA) motifs on this co-expression cluster<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data
Novel motifs
JASPAR motifs
Motifs | -log10(p-value) |
---|---|
MA0003.1 | 2.52553e-08 |
MA0004.1 | 0.00641363 |
MA0006.1 | 0.108418 |
MA0007.1 | 0.00477566 |
MA0009.1 | 4.61854 |
MA0014.1 | 4.00043e-05 |
MA0017.1 | 1.71956 |
MA0019.1 | 0.227824 |
MA0024.1 | 1.01968 |
MA0025.1 | 0.414602 |
MA0027.1 | 1.383 |
MA0028.1 | 0.00181467 |
MA0029.1 | 0.176856 |
MA0030.1 | 0.167052 |
MA0031.1 | 0.117328 |
MA0038.1 | 0.487726 |
MA0040.1 | 0.719475 |
MA0041.1 | 0.426593 |
MA0042.1 | 1.82586 |
MA0043.1 | 0.0746449 |
MA0046.1 | 13.6057 |
MA0048.1 | 0.000287453 |
MA0050.1 | 0.0542433 |
MA0051.1 | 0.00389865 |
MA0052.1 | 0.414363 |
MA0055.1 | 0.0779123 |
MA0056.1 | 0 |
MA0057.1 | 0.0158055 |
MA0058.1 | 0.00519371 |
MA0059.1 | 0.0819979 |
MA0060.1 | 0.281164 |
MA0061.1 | 0.00325132 |
MA0063.1 | 0 |
MA0066.1 | 0.165111 |
MA0067.1 | 0.239708 |
MA0068.1 | 0.344312 |
MA0069.1 | 2.44349 |
MA0070.1 | 0.501599 |
MA0071.1 | 0.119274 |
MA0072.1 | 0.849675 |
MA0073.1 | 5.72665e-05 |
MA0074.1 | 0.473278 |
MA0076.1 | 0.000177025 |
MA0077.1 | 0.479566 |
MA0078.1 | 0.310235 |
MA0081.1 | 0.0400093 |
MA0083.1 | 0.266732 |
MA0084.1 | 1.73182 |
MA0087.1 | 0.843012 |
MA0088.1 | 0.109502 |
MA0089.1 | 0 |
MA0090.1 | 2.34826 |
MA0091.1 | 0.23794 |
MA0092.1 | 1.32815 |
MA0093.1 | 0.00131127 |
MA0095.1 | 0 |
MA0098.1 | 0 |
MA0100.1 | 0.00488887 |
MA0101.1 | 0.0340037 |
MA0103.1 | 2.02157 |
MA0105.1 | 0.000207242 |
MA0106.1 | 0.614899 |
MA0107.1 | 0.00660217 |
MA0108.2 | 0.514899 |
MA0109.1 | 0 |
MA0111.1 | 0.529424 |
MA0113.1 | 0.957457 |
MA0114.1 | 2.23392 |
MA0115.1 | 0.19201 |
MA0116.1 | 0.451927 |
MA0117.1 | 0.0891848 |
MA0119.1 | 1.80477 |
MA0122.1 | 2.24388 |
MA0124.1 | 0.50249 |
MA0125.1 | 1.85521 |
MA0130.1 | 0 |
MA0131.1 | 0.3434 |
MA0132.1 | 0 |
MA0133.1 | 0 |
MA0135.1 | 4.89139 |
MA0136.1 | 0.0784355 |
MA0139.1 | 0.000237655 |
MA0140.1 | 0.373725 |
MA0141.1 | 1.96353 |
MA0142.1 | 0.45217 |
MA0143.1 | 0.958224 |
MA0144.1 | 0.0201057 |
MA0145.1 | 2.02058 |
MA0146.1 | 0.0032139 |
MA0147.1 | 0.00086697 |
MA0148.1 | 0.0821333 |
MA0149.1 | 0.106602 |
MA0062.2 | 9.19656e-05 |
MA0035.2 | 0.799364 |
MA0039.2 | 2.27868e-08 |
MA0138.2 | 0.0119021 |
MA0002.2 | 0.311441 |
MA0137.2 | 0.0449024 |
MA0104.2 | 1.80681e-05 |
MA0047.2 | 0.364577 |
MA0112.2 | 0.00547496 |
MA0065.2 | 0.235895 |
MA0150.1 | 0.0245807 |
MA0151.1 | 0 |
MA0152.1 | 0.590353 |
MA0153.1 | 8.27688 |
MA0154.1 | 0.00737324 |
MA0155.1 | 0.0385852 |
MA0156.1 | 0.00783235 |
MA0157.1 | 0.967544 |
MA0158.1 | 0 |
MA0159.1 | 0.11308 |
MA0160.1 | 0.321257 |
MA0161.1 | 0 |
MA0162.1 | 1.73612e-08 |
MA0163.1 | 7.89361e-07 |
MA0164.1 | 0.711194 |
MA0080.2 | 0.0048791 |
MA0018.2 | 0.105512 |
MA0099.2 | 0.235906 |
MA0079.2 | 0 |
MA0102.2 | 0.401893 |
MA0258.1 | 0.0552689 |
MA0259.1 | 0.00112806 |
MA0442.1 | 0 |
ENCODE TF ChIP-seq peak enrichment analysis<b>Summary:</b> For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained. <br><b>Analyst:</b> Erik Arner<br><br>link to source dataset<br><br>data
No analysis results for this cluster
Relative expression of the co-expression cluster<b>Summary:</b>Co-expression clusters are compared against FANTOM5 samples to obtain relative expression. <br><b>Analyst:</b>NA<br><br>link to data source<br> data