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Coexpression cluster:C387

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Full id: C387_Preadipocyte_Fibroblast_Adipocyte_tenocyte_Synoviocyte_mesothelioma_Ewing



Phase1 CAGE Peaks

  Short description
Hg19::chr15:81071703..81071719,+ p1@KIAA1199
Hg19::chr15:81171136..81171166,- -
p@chr15:81171136..81171166
Hg19::chr15:81171144..81171167,+ p@chr15:81171144..81171167
+
Hg19::chr15:81172081..81172103,+ p@chr15:81172081..81172103
+
Hg19::chr15:81173239..81173250,+ +
p@chr15:81173239..81173250
Hg19::chr15:81176511..81176526,+ p@chr15:81176511..81176526
+
Hg19::chr15:81181863..81181875,+ p14@KIAA1199
Hg19::chr15:81187409..81187422,+ p@chr15:81187409..81187422
+
Hg19::chr15:81199054..81199068,+ p@chr15:81199054..81199068
+
Hg19::chr15:81199093..81199117,+ p@chr15:81199093..81199117
+
Hg19::chr15:81201549..81201567,+ p2@KIAA1199
Hg19::chr15:81212437..81212457,+ p@chr15:81212437..81212457
+
Hg19::chr15:81212487..81212506,+ p@chr15:81212487..81212506
+
Hg19::chr15:81212537..81212560,+ p@chr15:81212537..81212560
+
Hg19::chr15:81213369..81213398,+ p@chr15:81213369..81213398
+
Hg19::chr15:81214436..81214445,+ p13@KIAA1199
Hg19::chr15:81221467..81221484,+ p7@KIAA1199
Hg19::chr15:81225614..81225625,+ p18@KIAA1199
Hg19::chr15:81225643..81225655,+ p5@KIAA1199
Hg19::chr15:81225699..81225710,+ p26@KIAA1199
Hg19::chr15:81242324..81242347,+ p4@KIAA1199
Hg19::chr15:81242470..81242502,+ p9@KIAA1199
Hg19::chr15:81242624..81242640,+ p8@KIAA1199
Hg19::chr15:81242954..81242966,+ p@chr15:81242954..81242966
+
Hg19::chr15:81243109..81243120,+ p@chr15:81243109..81243120
+
Hg19::chr15:81243857..81243870,+ p@chr15:81243857..81243870
+
Hg19::chr18:74817666..74817686,- p2@AB463902
p2@CU688026
Hg19::chr7:40251315..40251325,- p@chr7:40251315..40251325
-


Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


No results for this coexpression

Enriched Gene Ontology terms on this co-expression clusterSummary: Results for GOStat analysis on co-expressed clusters. Each cluster with promoters mapping to at least two different genes was analysed with GOStat (PMID: 14962934) with default parameter.
Analyst: Erik Arner

link to source dataset
data


GO IDGO nameFDR corrected p-value
GO:0050954sensory perception of mechanical stimulus0.0116566584245849
GO:0007605sensory perception of sound0.0116566584245849



Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset

cell_data
uberon_data
disease_data


Uber Anatomy
Ontology termp-valuen
omentum4.57e-176
peritoneum4.57e-176
abdominal cavity4.57e-176
visceral peritoneum4.57e-176
skin of body3.99e-1541
cavity lining4.78e-1412
serous membrane4.78e-1412
integument5.62e-1346
integumental system5.62e-1346
surface structure6.78e-1199
artery wall9.67e-114
tunica adventitia of artery9.67e-114
adventitia9.67e-114
tunica adventitia of blood vessel9.67e-114
aorta tunica adventitia9.67e-114
aorta wall9.67e-114
connective tissue1.30e-09371
dense regular connective tissue3.07e-093
tendon3.07e-093
regular connective tissue3.07e-093
breast6.35e-0710
perirenal fat7.01e-072
Disease
Ontology termp-valuen
musculoskeletal system disease1.08e-125
myotonic disease1.08e-125
muscle tissue disease1.08e-125
myopathy1.08e-125
muscular disease1.08e-125
myotonic dystrophy1.08e-125


Overrepresented TFBS (DNA) motifs on this co-expression clusterSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs



JASPAR motifs

Motifs-log10(p-value)
MA0003.14.5467e-05
MA0004.10.351577
MA0006.10.0399016
MA0007.10.325854
MA0009.10.441048
MA0014.10.00366856
MA0017.11.1712
MA0019.11.08938
MA0024.10.354374
MA0025.10.557187
MA0027.11.98963
MA0028.10.0452766
MA0029.10.369985
MA0030.10.947354
MA0031.10.833494
MA0038.10.503116
MA0040.10.374747
MA0041.10.11856
MA0042.10.681472
MA0043.10.441316
MA0046.10.431829
MA0048.10.0100542
MA0050.10.102063
MA0051.10.165625
MA0052.10.377904
MA0055.10.202697
MA0056.10
MA0057.10.00886853
MA0058.11.78731
MA0059.12.9586
MA0060.10.0117157
MA0061.10.00791773
MA0063.10
MA0066.10.503778
MA0067.10.724802
MA0068.10.00412538
MA0069.10.428576
MA0070.10.419162
MA0071.10.872033
MA0072.10.415392
MA0073.16.9882e-08
MA0074.10.165153
MA0076.10.0703269
MA0077.10.408948
MA0078.10.232083
MA0081.10.226222
MA0083.10.447432
MA0084.10.901266
MA0087.10.413345
MA0088.10.323185
MA0089.10
MA0090.11.9615
MA0091.11.7338
MA0092.10.0907294
MA0093.11.01292
MA0095.10
MA0098.10
MA0100.10.524766
MA0101.10.0419777
MA0103.10.339407
MA0105.10.0245234
MA0106.10.568183
MA0107.10.0213588
MA0108.20.307261
MA0109.10
MA0111.10.282297
MA0113.10.206168
MA0114.10.224223
MA0115.10.654355
MA0116.10.2388
MA0117.10.473208
MA0119.10.207161
MA0122.11.24012
MA0124.10.616574
MA0125.10.541304
MA0130.10
MA0131.10.686022
MA0132.10
MA0133.10
MA0135.10.466979
MA0136.10.172767
MA0139.10.385153
MA0140.10.865299
MA0141.11.27005
MA0142.10.285297
MA0143.10.594912
MA0144.10.0172203
MA0145.10.547718
MA0146.10.0777494
MA0147.11.09431
MA0148.12.48513
MA0149.10.137231
MA0062.20.00728391
MA0035.20.863515
MA0039.22.58737e-05
MA0138.20.232954
MA0002.20.738914
MA0137.20.0475444
MA0104.21.11738
MA0047.20.548812
MA0112.20.223961
MA0065.20.155257
MA0150.10.257536
MA0151.10
MA0152.10.146841
MA0153.10.526421
MA0154.10.127455
MA0155.10.0599969
MA0156.10.0483557
MA0157.10.731626
MA0158.10
MA0159.10.463936
MA0160.10.408878
MA0161.10
MA0162.10.000336087
MA0163.10.010716
MA0164.10.214689
MA0080.20.0409184
MA0018.20.570401
MA0099.20.147056
MA0079.22.0733e-15
MA0102.20.936833
MA0258.10.18561
MA0259.10.259637
MA0442.10



ENCODE TF ChIP-seq peak enrichment analysisSummary: For each TF and each co-expression cluster, the number of promoters with ENCODE TF ChIP signal was compared with the rest of promoters from the robust set using Fisher's exact test. Clusters with significant ChIP enrichment (q <= 0.05) after Benjamini-Hochberg correction were retained.
Analyst: Erik Arner

link to source dataset

data


No analysis results for this cluster

Relative expression of the co-expression clusterSummary:Co-expression clusters are compared against FANTOM5 samples to obtain relative expression.
Analyst:NA

link to data source
data


This analysis result is provided for C0 - C305 clusters.