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DOID:200

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Name:giant cell tumor
Namespace:FANTOM
Xrefs:
links:

MSH:D005870
NCI:C3055
NCI:C7069
SNOMEDCT_2010_1_31:115238001
SNOMEDCT_2010_1_31:134300001
SNOMEDCT_2010_1_31:189890001
SNOMEDCT_2010_1_31:189893004
SNOMEDCT_2010_1_31:443790001

UMLS_CUI:C0017525
Synonyms: "Giant cell neoplasm" EXACT [NCI2004_11_17:C7069]
"Giant cell tumor (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:115238001]
"Giant cell tumor (qualifier value)" EXACT [SNOMEDCT_2005_07_31:134300001]
"Giant cell tumor NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189893004]
"Giant cell tumors" RELATED []
"Giant cell tumors (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189890001]
"tumor of the Giant cell" EXACT [NCI2004_11_17:C3055]

Ontology association
Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.

link to ontology dataset
data


Parents

is_a:DOID:201(connective tissue cancer)



Children


is a:DOID:4305 (bone giant cell tumor)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples

Human (Homo sapiens)

Mouse (Mus musculus)

Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:200 (giant cell tumor), sorted by p-values
Analyst: Hideya Kawaji

link to source dataset
human : data
mouse : data


P-valueFFCPShort description
1.55e-98FFCP PHASE1:Hg19::chr16:77317713..77317723,+#_dcd7f6602f262a9fd1ffb8a0b46c943dp1@CU687665
1.55e-98FFCP PHASE2:Hg19::chr11:101742272..101742276,-#_dcd7f6602f262a9fd1ffb8a0b46c943dp@chr11:101742272..101742276, -
1.55e-98FFCP PHASE1:Hg19::chr11:101742272..101742276,-#_dcd7f6602f262a9fd1ffb8a0b46c943dp@chr11:101742272..101742276, -
1.55e-98FFCP PHASE2:Hg19::chr16:77317713..77317723,+#_dcd7f6602f262a9fd1ffb8a0b46c943dp1@CU687665
2.74e-50FFCP PHASE1:Hg19::chr16:51670868..51670880,-#_78b2229353a5c30db348b2c0cc1746b5p@chr16:51670868..51670880, -
2.74e-50FFCP PHASE2:Hg19::chr11:81551043..81551054,-#_78b2229353a5c30db348b2c0cc1746b5p@chr11:81551043..81551054, -
2.74e-50FFCP PHASE1:Hg19::chr11:81551043..81551054,-#_78b2229353a5c30db348b2c0cc1746b5p@chr11:81551043..81551054, -
2.74e-50FFCP PHASE2:Hg19::chr18:71197490..71197495,-#_78b2229353a5c30db348b2c0cc1746b5p@chr18:71197490..71197495, -
2.74e-50FFCP PHASE2:Hg19::chr16:51670868..51670880,-#_78b2229353a5c30db348b2c0cc1746b5p@chr16:51670868..51670880, -
2.74e-50FFCP PHASE2:Hg19::chr5:14034644..14034647,-#_78b2229353a5c30db348b2c0cc1746b5p@chr5:14034644..14034647, -
2.74e-50FFCP PHASE1:Hg19::chr5:14034644..14034647,-#_78b2229353a5c30db348b2c0cc1746b5p@chr5:14034644..14034647, -
2.74e-50FFCP PHASE1:Hg19::chr18:71197490..71197495,-#_78b2229353a5c30db348b2c0cc1746b5p@chr18:71197490..71197495, -
4.52e-50FFCP PHASE1:Hg19::chr3:106393655..106393659,+#_5d8d61470cf3cabf65eec21b0c510177p@chr3:106393655..106393659, +
4.52e-50FFCP PHASE2:Hg19::chr4:34480309..34480321,-#_5d8d61470cf3cabf65eec21b0c510177p@chr4:34480309..34480321, -
4.52e-50FFCP PHASE1:Hg19::chr3:45174403..45174415,+#_5d8d61470cf3cabf65eec21b0c510177p@chr3:45174403..45174415, +
4.52e-50FFCP PHASE1:Hg19::chr5:23952305..23952310,+#_5d8d61470cf3cabf65eec21b0c510177p@chr5:23952305..23952310, +
4.52e-50FFCP PHASE2:Hg19::chr5:23952305..23952310,+#_5d8d61470cf3cabf65eec21b0c510177p@chr5:23952305..23952310, +
4.52e-50FFCP PHASE1:Hg19::chr4:34480309..34480321,-#_5d8d61470cf3cabf65eec21b0c510177p@chr4:34480309..34480321, -
4.52e-50FFCP PHASE2:Hg19::chr3:45174403..45174415,+#_5d8d61470cf3cabf65eec21b0c510177p@chr3:45174403..45174415, +
4.52e-50FFCP PHASE2:Hg19::chr3:106393655..106393659,+#_5d8d61470cf3cabf65eec21b0c510177p@chr3:106393655..106393659, +
3.61e-34FFCP PHASE2:Hg19::chr4:177796841..177796851,+#_c585dfebaa30e4173b0b989854b79d54p1@ENST00000508790
3.61e-34FFCP PHASE1:Hg19::chr4:177796841..177796851,+#_c585dfebaa30e4173b0b989854b79d54p1@ENST00000508790
3.61e-34FFCP PHASE2:Hg19::chr7:119353807..119353812,-#_c585dfebaa30e4173b0b989854b79d54p@chr7:119353807..119353812, -
3.61e-34FFCP PHASE1:Hg19::chr7:119353807..119353812,-#_c585dfebaa30e4173b0b989854b79d54p@chr7:119353807..119353812, -
5.04e-34FFCP PHASE1:Hg19::chrX:132231123..132231140,-#_c78b32f54ed9522015ea17b24b3bc5bep1@USP26
5.04e-34FFCP PHASE2:Hg19::chr10:37004821..37004852,-#_c78b32f54ed9522015ea17b24b3bc5bep@chr10:37004821..37004852, -
5.04e-34FFCP PHASE2:Hg19::chrX:132231123..132231140,-#_c78b32f54ed9522015ea17b24b3bc5bep1@USP26
5.04e-34FFCP PHASE2:Hg19::chr8:15939682..15939688,+#_c78b32f54ed9522015ea17b24b3bc5bep@chr8:15939682..15939688, +
5.04e-34FFCP PHASE1:Hg19::chr4:46093758..46093781,-#_c78b32f54ed9522015ea17b24b3bc5bep@chr4:46093758..46093781, -
5.04e-34FFCP PHASE2:Hg19::chr4:46093758..46093781,-#_c78b32f54ed9522015ea17b24b3bc5bep@chr4:46093758..46093781, -
5.04e-34FFCP PHASE1:Hg19::chr8:15939682..15939688,+#_c78b32f54ed9522015ea17b24b3bc5bep@chr8:15939682..15939688, +
5.04e-34FFCP PHASE1:Hg19::chr10:37004821..37004852,-#_c78b32f54ed9522015ea17b24b3bc5bep@chr10:37004821..37004852, -
7.05e-34FFCP PHASE2:Hg19::chrX:89462083..89462089,+#_4945b1fdc2aba801a195943b0eda2235p@chrX:89462083..89462089, +
7.05e-34FFCP PHASE1:Hg19::chrX:89462083..89462089,+#_4945b1fdc2aba801a195943b0eda2235p@chrX:89462083..89462089, +
7.05e-34FFCP PHASE2:Hg19::chr11:84019133..84019135,-#_4945b1fdc2aba801a195943b0eda2235p@chr11:84019133..84019135, -
7.05e-34FFCP PHASE1:Hg19::chr11:84019133..84019135,-#_4945b1fdc2aba801a195943b0eda2235p@chr11:84019133..84019135, -
7.05e-34FFCP PHASE1:Hg19::chr6:155427848..155427862,+#_4945b1fdc2aba801a195943b0eda2235p@chr6:155427848..155427862, +
7.05e-34FFCP PHASE2:Hg19::chr6:155427848..155427862,+#_4945b1fdc2aba801a195943b0eda2235p@chr6:155427848..155427862, +
5.5e-31FFCP PHASE2:Hg19::chr3:106556598..106556609,-#_5f0da8db6f3560a4087c58a8869220aa-, p@chr3:106556598..106556609
5.5e-31FFCP PHASE1:Hg19::chr3:106556598..106556609,-#_5f0da8db6f3560a4087c58a8869220aap@chr3:106556598..106556609, -
7.1e-28FFCP PHASE2:Hg19::chr6:68597008..68597030,-#_bf0c95e8677122010e91311f39fe2a34p@chr6:68597008..68597030, -
7.1e-28FFCP PHASE1:Hg19::chr6:68597008..68597030,-#_bf0c95e8677122010e91311f39fe2a34p@chr6:68597008..68597030, -
4.32e-26FFCP PHASE1:Hg19::chr5:27723923..27723927,-#_9da90f13fcbb8695972d6a23d843c924p@chr5:27723923..27723927, -
4.32e-26FFCP PHASE2:Hg19::chr5:27723923..27723927,-#_9da90f13fcbb8695972d6a23d843c924-, p@chr5:27723923..27723927
4.32e-26FFCP PHASE2:Hg19::chr11:81549961..81549965,-#_9da90f13fcbb8695972d6a23d843c924p@chr11:81549961..81549965, -
4.32e-26FFCP PHASE1:Hg19::chr11:81549961..81549965,-#_9da90f13fcbb8695972d6a23d843c924p@chr11:81549961..81549965, -
5.56e-26FFCP PHASE1:Hg19::chr5:167315847..167315852,+#_9fe15baf940d9426e1206b9e93ca2effp@chr5:167315847..167315852, +
5.56e-26FFCP PHASE1:Hg19::chrX:89176902..89176913,+#_9fe15baf940d9426e1206b9e93ca2effp1@TGIF2LX
5.56e-26FFCP PHASE1:Hg19::chrX:124347061..124347063,-#_9fe15baf940d9426e1206b9e93ca2effp@chrX:124347061..124347063, -
5.56e-26FFCP PHASE1:Hg19::chrX:132352373..132352384,-#_9fe15baf940d9426e1206b9e93ca2effp1@TFDP3
5.56e-26FFCP PHASE2:Hg19::chrX:124347061..124347063,-#_9fe15baf940d9426e1206b9e93ca2effp@chrX:124347061..124347063, -
5.56e-26FFCP PHASE2:Hg19::chrX:132352373..132352384,-#_9fe15baf940d9426e1206b9e93ca2effp1@TFDP3
5.56e-26FFCP PHASE2:Hg19::chr5:153673183..153673186,+#_9fe15baf940d9426e1206b9e93ca2eff+, p@chr5:153673183..153673186
5.56e-26FFCP PHASE2:Hg19::chr4:189864018..189864037,+#_9fe15baf940d9426e1206b9e93ca2effp@chr4:189864018..189864037, +
5.56e-26FFCP PHASE1:Hg19::chr5:153673183..153673186,+#_9fe15baf940d9426e1206b9e93ca2effp@chr5:153673183..153673186, +
5.56e-26FFCP PHASE1:Hg19::chr4:189864018..189864037,+#_9fe15baf940d9426e1206b9e93ca2effp@chr4:189864018..189864037, +
5.56e-26FFCP PHASE2:Hg19::chr5:167315847..167315852,+#_9fe15baf940d9426e1206b9e93ca2effp@chr5:167315847..167315852, +
5.56e-26FFCP PHASE2:Hg19::chrX:89176902..89176913,+#_9fe15baf940d9426e1206b9e93ca2effp1@TGIF2LX
9.18e-26FFCP PHASE2:Hg19::chr18:14946224..14946236,+#_5069109a8ee287f6021550185b2a68cap1@FLJ44255
9.18e-26FFCP PHASE2:Hg19::chr7:12997533..12997536,+#_5069109a8ee287f6021550185b2a68cap@chr7:12997533..12997536, +
9.18e-26FFCP PHASE1:Hg19::chr7:12997533..12997536,+#_5069109a8ee287f6021550185b2a68cap@chr7:12997533..12997536, +
9.18e-26FFCP PHASE1:Hg19::chr18:14946224..14946236,+#_5069109a8ee287f6021550185b2a68cap1@FLJ44255
1.12e-25FFCP PHASE2:Hg19::chrX:55246809..55246816,+#_d8ce887e174223df6d4aea4afda6acb9p3@PAGE5
1.12e-25FFCP PHASE1:Hg19::chrX:55246809..55246816,+#_d8ce887e174223df6d4aea4afda6acb9p3@PAGE5
4.89e-23FFCP PHASE1:Hg19::chrX:55246818..55246829,+#_dbefc90921efed7eab894b584f2e7ac1p2@PAGE5
4.89e-23FFCP PHASE2:Hg19::chrX:55246818..55246829,+#_dbefc90921efed7eab894b584f2e7ac1p2@PAGE5
3.11e-21FFCP PHASE1:Hg19::chr12:127737083..127737103,-#_f4e80ac5eaaf0a2d8242bada4845e51ep@chr12:127737083..127737103, -
3.11e-21FFCP PHASE2:Hg19::chr8:119905427..119905438,-#_f4e80ac5eaaf0a2d8242bada4845e51ep@chr8:119905427..119905438, -
3.11e-21FFCP PHASE2:Hg19::chr12:127737083..127737103,-#_f4e80ac5eaaf0a2d8242bada4845e51ep@chr12:127737083..127737103, -
3.11e-21FFCP PHASE1:Hg19::chr8:119905427..119905438,-#_f4e80ac5eaaf0a2d8242bada4845e51ep@chr8:119905427..119905438, -
3.11e-21FFCP PHASE1:Hg19::chr5:27742047..27742052,-#_f4e80ac5eaaf0a2d8242bada4845e51ep@chr5:27742047..27742052, -
3.11e-21FFCP PHASE2:Hg19::chr5:27742047..27742052,-#_f4e80ac5eaaf0a2d8242bada4845e51ep@chr5:27742047..27742052, -
3.81e-21FFCP PHASE2:Hg19::chr5:135378750..135378757,+#_6feaa4e397889010a59b92e1a8edf062p@chr5:135378750..135378757, +
3.81e-21FFCP PHASE1:Hg19::chr9:118595109..118595124,+#_6feaa4e397889010a59b92e1a8edf062p@chr9:118595109..118595124, +
3.81e-21FFCP PHASE2:Hg19::chr13:87732242..87732246,-#_6feaa4e397889010a59b92e1a8edf062p@chr13:87732242..87732246, -
3.81e-21FFCP PHASE1:Hg19::chr5:135378750..135378757,+#_6feaa4e397889010a59b92e1a8edf062p@chr5:135378750..135378757, +
3.81e-21FFCP PHASE1:Hg19::chr2:145815206..145815208,+#_6feaa4e397889010a59b92e1a8edf062p@chr2:145815206..145815208, +
3.81e-21FFCP PHASE2:Hg19::chr2:145815206..145815208,+#_6feaa4e397889010a59b92e1a8edf062p@chr2:145815206..145815208, +
3.81e-21FFCP PHASE2:Hg19::chr9:118595109..118595124,+#_6feaa4e397889010a59b92e1a8edf062p@chr9:118595109..118595124, +
3.81e-21FFCP PHASE2:Hg19::chr19:9811101..9811112,-#_6feaa4e397889010a59b92e1a8edf062p3@ZNF812
3.81e-21FFCP PHASE1:Hg19::chr13:87732242..87732246,-#_6feaa4e397889010a59b92e1a8edf062p@chr13:87732242..87732246, -
3.81e-21FFCP PHASE1:Hg19::chr19:9811101..9811112,-#_6feaa4e397889010a59b92e1a8edf062p3@ZNF812
4.66e-21FFCP PHASE1:Hg19::chrX:140336680..140336697,-#_11a3bd6589c95cd3c47a62499b2050d9p2@SPANXC
4.66e-21FFCP PHASE2:Hg19::chrX:140336680..140336697,-#_11a3bd6589c95cd3c47a62499b2050d9p2@SPANXC
5.7e-21FFCP PHASE2:Hg19::chr2:33171944..33171945,+#_a2e3fd944c35e3d79cdef2ee5ed5591cp15@LTBP1
5.7e-21FFCP PHASE2:Hg19::chr5:142000787..142000807,-#_a2e3fd944c35e3d79cdef2ee5ed5591cp@chr5:142000787..142000807, -
5.7e-21FFCP PHASE1:Hg19::chr2:33171944..33171945,+#_a2e3fd944c35e3d79cdef2ee5ed5591cp15@LTBP1
5.7e-21FFCP PHASE1:Hg19::chr5:142000787..142000807,-#_a2e3fd944c35e3d79cdef2ee5ed5591cp@chr5:142000787..142000807, -
6.96e-21FFCP PHASE2:Hg19::chr18:63273310..63273317,+#_21914a77f540c28e33f1a8347c84e8a0p@chr18:63273310..63273317, +
6.96e-21FFCP PHASE1:Hg19::chr3:60761167..60761179,+#_21914a77f540c28e33f1a8347c84e8a0p@chr3:60761167..60761179, +
6.96e-21FFCP PHASE2:Hg19::chr8:76774227..76774234,+#_21914a77f540c28e33f1a8347c84e8a0+, p@chr8:76774227..76774234
6.96e-21FFCP PHASE1:Hg19::chr8:76774227..76774234,+#_21914a77f540c28e33f1a8347c84e8a0p@chr8:76774227..76774234, +
6.96e-21FFCP PHASE1:Hg19::chr18:63273310..63273317,+#_21914a77f540c28e33f1a8347c84e8a0p@chr18:63273310..63273317, +
6.96e-21FFCP PHASE2:Hg19::chr5:81611412..81611423,+#_21914a77f540c28e33f1a8347c84e8a0p@chr5:81611412..81611423, +
6.96e-21FFCP PHASE1:Hg19::chr5:81611412..81611423,+#_21914a77f540c28e33f1a8347c84e8a0p@chr5:81611412..81611423, +
6.96e-21FFCP PHASE2:Hg19::chr3:60761167..60761179,+#_21914a77f540c28e33f1a8347c84e8a0p@chr3:60761167..60761179, +
6.96e-21FFCP PHASE2:Hg19::chr11:12061317..12061323,-#_21914a77f540c28e33f1a8347c84e8a0p@chr11:12061317..12061323, -
6.96e-21FFCP PHASE1:Hg19::chr11:12061317..12061323,-#_21914a77f540c28e33f1a8347c84e8a0p@chr11:12061317..12061323, -
6.96e-21FFCP PHASE2:Hg19::chr11:28792916..28792929,+#_21914a77f540c28e33f1a8347c84e8a0p@chr11:28792916..28792929, +
6.96e-21FFCP PHASE1:Hg19::chr11:28792916..28792929,+#_21914a77f540c28e33f1a8347c84e8a0p@chr11:28792916..28792929, +