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MCL coexpression mm9:1543

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Phase1 CAGE Peaks

  Short description
Mm9::chr11:102269213..102269227,- p12@Slc25a39
Mm9::chr15:82612609..82612614,- p1@ENSMUST00000075786
Mm9::chr16:35932853..35932864,- p@chr16:35932853..35932864
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Mm9::chr16:44061582..44061592,- p@chr16:44061582..44061592
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Mm9::chr16:44061594..44061597,- p@chr16:44061594..44061597
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Enriched pathways on this co-expression clusterSummary:
Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.
Analyst: Emmanuel Dimont

link to source dataset
data


no results for this coexpression

Relative expression of the co-expression cluster over median
Analyst:





Enriched sample ontology terms on this co-expression clusterSummary:To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. Analyst: Hideya Kawaji

links to source dataset

cell_data
uberon_data


Cell Type
Ontology termp-valuen
metabolising cell3.79e-135
endopolyploid cell3.79e-135
parenchymal cell3.79e-135
polyploid cell3.79e-135
hepatocyte3.79e-135

Uber Anatomy
Ontology termp-valuen
liver8.03e-3422
epithelial sac8.03e-3422
digestive gland8.03e-3422
epithelium of foregut-midgut junction8.03e-3422
anatomical boundary8.03e-3422
hepatobiliary system8.03e-3422
foregut-midgut junction8.03e-3422
hepatic diverticulum8.03e-3422
liver primordium8.03e-3422
septum transversum8.03e-3422
liver bud8.03e-3422
digestive tract diverticulum3.04e-3223
sac3.04e-3223
exocrine gland1.82e-2925
exocrine system1.82e-2925
trunk mesenchyme1.52e-1745
abdomen element6.90e-1649
abdominal segment element6.90e-1649
abdominal segment of trunk6.90e-1649
abdomen6.90e-1649
epithelial tube1.75e-1447
endocrine gland1.81e-1260
mesenchyme3.21e-1261
entire embryonic mesenchyme3.21e-1261
gut epithelium5.32e-1255
gland2.69e-1165
subdivision of trunk4.40e-1166
foregut4.91e-1080
endocrine system6.29e-1072
unilaminar epithelium1.44e-0966
endo-epithelium4.87e-0969
trunk region element8.41e-0979
immaterial anatomical entity1.45e-0779
trunk2.19e-0790


TFBS overrepresentationSummary:The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. Analyst: Michiel de Hoon

link to source data
Novel motifs
data

Jaspar motifs
data


Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.211284
MA0004.10.603793
MA0006.10.419915
MA0007.10.587678
MA0009.11.06266
MA0014.10.0502051
MA0017.11.14026
MA0019.12.02888
MA0024.11.01759
MA0025.11.30092
MA0027.12.72141
MA0028.10.43138
MA0029.10.995171
MA0030.11.00195
MA0031.10.965177
MA0038.10.757669
MA0040.11.07552
MA0041.10.522007
MA0042.10.507715
MA0043.11.1618
MA0046.11.09955
MA0048.10.205696
MA0050.10.645342
MA0051.10.767098
MA0052.11.08379
MA0055.10.602741
MA0056.10
MA0057.10.192781
MA0058.11.25013
MA0059.11.27866
MA0060.10.330907
MA0061.10.364227
MA0063.10
MA0066.10.746072
MA0067.11.41352
MA0068.10.197245
MA0069.11.08414
MA0070.11.07418
MA0071.11.55428
MA0072.11.06547
MA0073.10.000589538
MA0074.10.708108
MA0076.10.470037
MA0077.11.04318
MA0078.10.801834
MA0081.10.53877
MA0083.11.16099
MA0084.11.74401
MA0087.11.11687
MA0088.10.888325
MA0089.10
MA0090.10.566938
MA0091.10.617887
MA0092.10.567278
MA0093.11.12162
MA0095.10
MA0098.10
MA0100.10.695835
MA0101.10.523409
MA0103.10.460936
MA0105.10.248108
MA0106.10.809991
MA0107.10.454197
MA0108.20.897859
MA0109.10
MA0111.10.582193
MA0113.10.780358
MA0114.12.55088
MA0115.12.6202
MA0116.10.419688
MA0117.11.13165
MA0119.10.524046
MA0122.11.15196
MA0124.11.35963
MA0125.11.28445
MA0130.10
MA0131.10.869325
MA0132.10
MA0133.10
MA0135.11.19898
MA0136.10.729175
MA0139.10.295945
MA0140.10.695713
MA0141.13.11252
MA0142.10.950155
MA0143.10.797553
MA0144.10.956957
MA0145.10.157686
MA0146.10.21827
MA0147.10.986917
MA0148.10.621195
MA0149.10.529387
MA0062.20.254018
MA0035.20.700704
MA0039.20.0511423
MA0138.20.861035
MA0002.20.809945
MA0137.20.479301
MA0104.21.52809
MA0047.20.75686
MA0112.20.927461
MA0065.20.929207
MA0150.11.43499
MA0151.10
MA0152.10.756973
MA0153.11.21594
MA0154.10.203217
MA0155.10.515751
MA0156.10.469089
MA0157.10.91689
MA0158.10
MA0159.11.01146
MA0160.11.51238
MA0161.10
MA0162.10.245828
MA0163.10.0644585
MA0164.11.7313
MA0080.20.455167
MA0018.20.739807
MA0099.20.854449
MA0079.20.000313198
MA0102.21.79669
MA0258.10.91616
MA0259.10.960816
MA0442.10